BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51320.1
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937992 jgi|Araly1|937992|scaffold_502183.1 2562 0.0
> Ahg937992 jgi|Araly1|937992|scaffold_502183.1
Length=1638
Score = 2562 bits (1387), Expect = 0.0
Identities = 1544/1621 (95%), Gaps = 6/1621 (0%)
Strand=Plus/Plus
Query 101 AGCATTCAAGCTGGAGATGAATGGCAAAAGCTTCCTCTATTCGCCAATTCGTCACATCCA 160
||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2 AGCATCCAAGCTGGAGATGAATGGCAAAAGCTTCTTCTATCCGCCAATTCGTCACATCCA 61
Query 161 GATTCATCGT-CCCCGGAACGGGTCTGCTTAAGGGTTTCAAACTTGTCGAAGATTCCAAC 219
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GATTCATC-TCCCCCGGAACGGGTCTGCTTAAGGGTTTCAAACTTGTCGAAGATTCCAAC 120
Query 220 TCTATTACACACCTCTTCCAAGTCCACGCGAGGCTAATCACCTCCGGTAACTTCTGGGAT 279
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTATTAAACACCTCTTCCAAGTCCACGCGAGGCTAATCACCTCCGGTAACTTCTGGGAT 180
Query 280 TCATCTTGGGCTATCAGATTGTTGAAGTCTTCTTCGCGTTTTGGTGATTCTAGCTACACC 339
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 181 TCTTCTTGGGCTATCAGATTGTTGAAGTGTTCTTCGCGTTTTGGTGATTCTAGCTACA-C 239
Query 340 G-TTTCGATATACCGCAGCATTGGCAAGCTTTACTGCGCAAATCCCGTCTTTAAGGCTTA 398
| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 GCTTTCGATATTCCGCAGCATTGGGAAGCTTTACTGTGCAAATCCCGTCTTTAAGGCTTA 299
Query 399 TTTGGTCTCGTCTTCTCCGAAACAAGCGTTGGGGTTTTACTTCGATATACTAAGATTTGG 458
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TTTGGTCTCTTCTTCTCCGAAACAAGCGTTGGGGTTTTACTTCGATATACTGAGATTTGG 359
Query 459 TTTTGTTCCTGATTCATACACCTTCGTTTCGTTGATTAGTTGTATTGAGAAGACTTGTTG 518
||||||||||||| | |||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 360 TTTTGTTCCTGATACTTACACCTTCGTTTCATTGGTTAGTTGTATCGAGAAGACTTGTTG 419
Query 519 CGTTGATTCTGGTAAAATGTGTCATGGGCAAGCCATTAAGCATGGATGCGATCAAGTTTT 578
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 420 CGTTGATTCTGGTAAAATGTGTCATGGGCAGGCTATTAAGCATGGATGCGATCAAGTTTT 479
Query 579 GCCTGTTCAAAATTCGTTAATGCATATGTATACTTGTTGTGGTGCTTTGGATCTTGCAAA 638
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCCTGTTCAAAATTCGTTAATTCATATGTATACTTGTTGTGGTGCTTTGGATCTTGCAAA 539
Query 639 GAAGCTGTTTGTTGAAATTCCTAAGAGAGATATTGTGTCCTGGAACTCTATAATAGCTGG 698
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 540 GAAGCTGTTTGTTGAAATTCCTAAGAGAGATATTGTGTCCTGGAACTCGATAATCGCTGG 599
Query 699 GATGGTGAGGAATGGTGATGTTTTGGCTGCACACAAGTTGTTCGATGAAATGCCTGACAA 758
| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 600 GGCGGTGAGGAATGGTGATGTTTTGTATGCTCACAAGTTGTTCGATGAAATGCCTGAGAA 659
Query 759 AAACATTATTTCTTGGAATATCATGATTAGTGCTTATTTGGGTGCGAATAATCCTGGAGT 818
|||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct 660 AAACATGATTTCTTGGAATATCATGATTAGCGCTTATTTAGGTGCTAATAATCCCGGAGT 719
Query 819 TTCCATTAGTTTGTTCCGTGAGATGGTCAGAGCAGGGTTCCAAGGAAATGAGAGTACGTT 878
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 720 TTCCATTAGTTTGTTCCGTGAGATGGTTGGAGCAGGGTTCCAAGGAAATGAGAGTACATT 779
Query 879 GGTTTTGTTGTTGAATGCTTGTGGTAGATCAGCTAGATTGAAGGAAGGTAGGTCGGTTCA 938
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GGTTTTGTTGTTGAATGCTTGTGGCAGATCAGCTAGATTGAAGGAAGGTAGGTCGGTTCA 839
Query 939 TGCTTCTTTGATAAGAACCTTTCTGAATTCGAGTGTAGTTATTGATACAGCTCTTATTGA 998
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 TGCTTCTTTGATAAGAACCTTTCTGAATTCGAGTGTAGTCATTGATACAGCTCTTATTGA 899
Query 999 CATGTATGGAAAGTGCAAGGAAGTAGGTTTAGCACGTAGGATATTCGATAGTCTATCTAT 1058
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 900 CATGTATGGAAAGTGCAAGGAAGTAGATTTAGCACGTAGGATATTCGATAGTTTATCTGT 959
Query 1059 TAGAAACAAAGTTACTTGGAATGTGATGATATTGGCACATTGTCTTCACGGGCGTCCTGA 1118
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TAGGAACAAAGTAACGTGGAATGTGATGATATTGGCACATTGTCTTCACGGGCGTCCTGA 1019
Query 1119 AGGTGGGCTCGAGTTATTTGAAGCCATGATCAATGG-TATGCTTAGACCCGATGAAGTGA 1177
|| ||||||||| |||||||||||||||||| |||| | |||||||||| ||||||||||
Sbjct 1020 AGATGGGCTCGAATTATTTGAAGCCATGATCGATGGGT-TGCTTAGACCTGATGAAGTGA 1078
Query 1178 CATTTGTTGGTGTTCTCTGCGGTTGTGCTAGAGCTGGGCTTGTTTCTCAAGGACAAAGTT 1237
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 CATTTGTTGGTGTTCTCTGCGGTTGTGCTAGAGCTGGGCTTGTTTATCAAGGACAAAGTT 1138
Query 1238 ACTATTCTCTGATGGTTGATGAGTTCCAGATCAAACCCAACTTTGGACACCAATGGTGCA 1297
|||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1139 ACTACTCCCTGATGGTTGACGAGTTCGAGATCAAACCCAACTTTGGACACCAATGGTGCA 1198
Query 1298 TGGCTAATCTTTACTCCAGCGCCGGGTTCCCTGAAGAAGCAGAGGAAGCTCTGAAGAATC 1357
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGCTAATCTTTACTCCAACGCCGGGTTCCCTGAAGAAGCAGAGGAAGCTCTGAAGAATC 1258
Query 1358 TGCCAGATGAAGATGTGACACCAGAATCTACAAAGTGGGCAAACTTGCTCAGCTCGTCGC 1417
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1259 TGCCAGAGGAAGATGTGACACCAGAATCTACAAAATGGGCAAACTTGCTCAGCTCGTCGC 1318
Query 1418 GTTTTACAGGAAACCCGACTCTAGGGGAGAGCATTGCCAAGTCCCTGATAGAGACAGATC 1477
|||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1319 GTTTCACAGTAAACCCGGCTCTAGGGGAGAGGTTTGCCAAGTCCCTGATAGAGACAGATC 1378
Query 1478 CTTTGAACTACAAGTATTACCATTTGCTGATGAATATTTACAGTGTTACGGGACGGTGGG 1537
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1379 CTTTGAACTACAAGTATTACCATTTGCTGATGAACATTTACAGTGTTACGGGAAGGTGGG 1438
Query 1538 AGGATGTTAATAGAGTGAGAGAGATGGTGAAGGAGAGGAAAATAGGACGAATACCCGGGT 1597
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGGATGTTAATAGAGTGAGAGAGGTGGTGAAGGAGAGGAAAATAGGACGAATACCCGGGT 1498
Query 1598 GTGGCCTTGTGGACTTGAAGGAGATAGTCCATGGCCTTAGACTAGGATGCAAAGAAGCAG 1657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GTGGCCTTGTGGACTTGGAGGAGATAGTCCATGGCCTTAGACTAGGATGCAAAGAAGCAG 1558
Query 1658 AAAAGGTGTTCACTGAGACTAGTTTAGAAAAATGCTACAGTGATTCACCGTCATAATAAA 1717
|||| ||| |||||||||||||| ||||| |||| ||||||||||||| | |||||||||
Sbjct 1559 AAAAAGTGATCACTGAGACTAGTCTAGAACAATGGTACAGTGATTCACTGACATAATAAA 1618
Query 1718 G 1718
|
Sbjct 1619 G 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73818894810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5