BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G51325.1

Length=704
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485484 jgi|Araly1|485484|fgenesh2_kg.5__1476__AT3G51325.1         512    1e-144


> Ahg485484 jgi|Araly1|485484|fgenesh2_kg.5__1476__AT3G51325.1
Length=609

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 377/421 (90%), Gaps = 23/421 (5%)
 Strand=Plus/Plus

Query  260  AAGAGGAAGATGAAGGTTCTGGAGAAGTGGTTGGCCTTGCTGTACCCGAGAGTGCAGGGA  319
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  211  AAGAAGAAGATGAAGGTTCTGGAGAAGTGGTTGGCCTTGCTGTACCCGAGAGTGCAGGGA  270

Query  320  GGAGAAGGAAGAGAGGAAGAGTGTTGTAGTGTTTGTTTGATGAGAATGGAGGCAAAAGAT  379
            |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  271  GGAGGAGGAAGAGAGGAAGAGTGTTGTAGTGTTTGTCTGATGAGAATGGAGGCAAAAGAT  330

Query  380  GTCATCAAGTCTCTACCTTGTTCCCATGAGTTTCATAGTCTCTGCGTCGATACGTGGTTC  439
            |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  331  GTCATCAAGTCTCTTCCTTGTTCCCATGAGTTTCATAGTCTATGCGTCGATACGTGGTTC  390

Query  440  AATGTCAGCCGTAAGATTTGCTGTCCTCTTTGCCGTTTTTCACCCACTACCATCCTTCTT  499
            ||||||||||| |||||||||||||||||||| || ||||||||  ||||||| || || 
Sbjct  391  AATGTCAGCCGCAAGATTTGCTGTCCTCTTTGTCGCTTTTCACCTGCTACCATTCTCCTC  450

Query  500  ACCGATGAACTTCTCCTCTGGTTTTCTTCTTTTCATTTCTGATTCCCAT-TGTCTCTGTA  558
            ||||||||||||||||||||||| |||||||| |||||||||||||  | ||||||||||
Sbjct  451  ACCGATGAACTTCTCCTCTGGTTCTCTTCTTTCCATTTCTGATTCCT-TGTGTCTCTGTA  509

Query  559  TTCCTGCTTTTCTGGGGATCAAACATCTTTCTCCTTGTATAATACTATAAAATCTCTTGT  618
            |||||||||||||||| |  |    |            | | |||| |||||||||||||
Sbjct  510  TTCCTGCTTTTCTGGG-A--A----T------------A-A-TACTTTAAAATCTCTTGT  548

Query  619  AGTACTAGTTTTCCATTCAAGGAGGAATGTCTAAGGAGTTTGATTCCTCTCTGGaaaaaa  678
             ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct  549  TGTACTAGTTTTCCATTCAAGGGGGAATGTCTAAGAAGTTTGATTCCTCTCTGGACAAAA  608

Query  679  a  679
            |
Sbjct  609  A  609


 Score =  302 bits (163),  Expect = 3e-81
 Identities = 201/218 (92%), Gaps = 8/218 (4%)
 Strand=Plus/Plus

Query  14   aaaaaaagaaaaagaaagaggagaagaagagaaggtgagaagTAAGGATCTGGTGTTGGT  73
            ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAAGAAATAAAAAGAAAGAGGAGAAGAAGAGAAGGTGAGAAGTAAGGATCTGGTGTTGGT  60

Query  74   GTGTGAACATAAAGAAAGAGAGAGAGGTGTGTTTAACGTACATTGTAATCCATAAAAGAG  133
            |||||||||||||||  ||||||| | |||||||||||||||||||||||||| |||   
Sbjct  61   GTGTGAACATAAAGA--GAGAGAG-G-TGTGTTTAACGTACATTGTAATCCATTAAATT-  115

Query  134  AAA-AGCCTTGCAAATCACGCAACAGTGACCAACCCCCtttttttG-TTTGTCTATCCAA  191
            ||| ||||||||||||||||||||||||||||||||| |||||||| |||| || |||||
Sbjct  116  AAAGAGCCTTGCAAATCACGCAACAGTGACCAACCCC-TTTTTTTGGTTTGCCTCTCCAA  174

Query  192  CACACACGCCTCTTATTACACTCTGTTAAATTGATAAA  229
            |||||||||||||| ||||||||||||| |||||||||
Sbjct  175  CACACACGCCTCTTCTTACACTCTGTTATATTGATAAA  212



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25885460643


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5