BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51325.1 Length=704 Score E Sequences producing significant alignments: (Bits) Value Ahg485484 jgi|Araly1|485484|fgenesh2_kg.5__1476__AT3G51325.1 512 1e-144 > Ahg485484 jgi|Araly1|485484|fgenesh2_kg.5__1476__AT3G51325.1 Length=609 Score = 512 bits (277), Expect = 1e-144 Identities = 377/421 (90%), Gaps = 23/421 (5%) Strand=Plus/Plus Query 260 AAGAGGAAGATGAAGGTTCTGGAGAAGTGGTTGGCCTTGCTGTACCCGAGAGTGCAGGGA 319 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 211 AAGAAGAAGATGAAGGTTCTGGAGAAGTGGTTGGCCTTGCTGTACCCGAGAGTGCAGGGA 270 Query 320 GGAGAAGGAAGAGAGGAAGAGTGTTGTAGTGTTTGTTTGATGAGAATGGAGGCAAAAGAT 379 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 271 GGAGGAGGAAGAGAGGAAGAGTGTTGTAGTGTTTGTCTGATGAGAATGGAGGCAAAAGAT 330 Query 380 GTCATCAAGTCTCTACCTTGTTCCCATGAGTTTCATAGTCTCTGCGTCGATACGTGGTTC 439 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 331 GTCATCAAGTCTCTTCCTTGTTCCCATGAGTTTCATAGTCTATGCGTCGATACGTGGTTC 390 Query 440 AATGTCAGCCGTAAGATTTGCTGTCCTCTTTGCCGTTTTTCACCCACTACCATCCTTCTT 499 ||||||||||| |||||||||||||||||||| || |||||||| ||||||| || || Sbjct 391 AATGTCAGCCGCAAGATTTGCTGTCCTCTTTGTCGCTTTTCACCTGCTACCATTCTCCTC 450 Query 500 ACCGATGAACTTCTCCTCTGGTTTTCTTCTTTTCATTTCTGATTCCCAT-TGTCTCTGTA 558 ||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||| Sbjct 451 ACCGATGAACTTCTCCTCTGGTTCTCTTCTTTCCATTTCTGATTCCT-TGTGTCTCTGTA 509 Query 559 TTCCTGCTTTTCTGGGGATCAAACATCTTTCTCCTTGTATAATACTATAAAATCTCTTGT 618 |||||||||||||||| | | | | | |||| ||||||||||||| Sbjct 510 TTCCTGCTTTTCTGGG-A--A----T------------A-A-TACTTTAAAATCTCTTGT 548 Query 619 AGTACTAGTTTTCCATTCAAGGAGGAATGTCTAAGGAGTTTGATTCCTCTCTGGaaaaaa 678 ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| Sbjct 549 TGTACTAGTTTTCCATTCAAGGGGGAATGTCTAAGAAGTTTGATTCCTCTCTGGACAAAA 608 Query 679 a 679 | Sbjct 609 A 609 Score = 302 bits (163), Expect = 3e-81 Identities = 201/218 (92%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 14 aaaaaaagaaaaagaaagaggagaagaagagaaggtgagaagTAAGGATCTGGTGTTGGT 73 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAGAAATAAAAAGAAAGAGGAGAAGAAGAGAAGGTGAGAAGTAAGGATCTGGTGTTGGT 60 Query 74 GTGTGAACATAAAGAAAGAGAGAGAGGTGTGTTTAACGTACATTGTAATCCATAAAAGAG 133 ||||||||||||||| ||||||| | |||||||||||||||||||||||||| ||| Sbjct 61 GTGTGAACATAAAGA--GAGAGAG-G-TGTGTTTAACGTACATTGTAATCCATTAAATT- 115 Query 134 AAA-AGCCTTGCAAATCACGCAACAGTGACCAACCCCCtttttttG-TTTGTCTATCCAA 191 ||| ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||| Sbjct 116 AAAGAGCCTTGCAAATCACGCAACAGTGACCAACCCC-TTTTTTTGGTTTGCCTCTCCAA 174 Query 192 CACACACGCCTCTTATTACACTCTGTTAAATTGATAAA 229 |||||||||||||| ||||||||||||| ||||||||| Sbjct 175 CACACACGCCTCTTCTTACACTCTGTTATATTGATAAA 212 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25885460643 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5