BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51330.1
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937994 jgi|Araly1|937994|scaffold_502185.1 2468 0.0
Ahg898036 jgi|Araly1|898036|Al_scaffold_0005_2002 1358 0.0
Ahg937996 jgi|Araly1|937996|scaffold_502187.1 804 0.0
Ahg937995 jgi|Araly1|937995|scaffold_502186.1 219 8e-56
> Ahg937994 jgi|Araly1|937994|scaffold_502185.1
Length=1635
Score = 2468 bits (1336), Expect = 0.0
Identities = 1538/1636 (94%), Gaps = 11/1636 (1%)
Strand=Plus/Plus
Query 54 AAGCTCCGAGATTGAAGTCATGGTCGTTGCACGCCAAGTGTTTGTGTTATTGTCTCTGTT 113
|||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 4 AAGCTCTGAGAGCGAAGTCATGGTTGTTGCACGCCATGTGTTTGTGTTATTGTCTCTGTT 63
Query 114 AGT--TGTG-TGTTGGGGATTGGAGAGATGTGAGGCTTCTGGGAAGTTTAGCTTTGAAGT 170
||| || | | |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 64 AGTGGTGGGCTTTTGGGGTTTGGAGAGATGTGAGGCTTCTGGGAAGTTTAGCTTCGAAGT 123
Query 171 TCACCATATGTTCTCTGATAGGGTCAAGCAAAGTCTTGGACTTGACGATCTAGTGCCGGA 230
|||||| |||||||||||||| |||||||||| |||||| |||||||||||||| |||||
Sbjct 124 TCACCACATGTTCTCTGATAGAGTCAAGCAAACTCTTGGGCTTGACGATCTAGTTCCGGA 183
Query 231 AAAGGGAAGTTTGGAGTACTTCAAGGTTTTGGCACAGCGTGATCGGTTGATCAGAGGTCG 290
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 184 AAAAGGAAGTTTGGAGTACTTCAAGGTTTTGGCACGGCGTGATCGGTTGATCAGAGGTCG 243
Query 291 AGGTCTTGCCTCCAACAACGAAGAAACCCCTATTACTTTCATGCGGGGAAATCGCACGAT 350
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 244 AGGTCTTGCCTCCAACAATGAAGAAACCCCTATTACTTTCATGCGGGGAAATCGCACGGT 303
Query 351 TTCAATCGACCTTCTGGGATTCTTGCACTACGCCAATGTCTCTGTGGGAACACCGGCCAC 410
||||||| |||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 304 TTCAATCAACCTTCTGGGATTCCTGCACTACGCCAATGTTTCTGTGGGGACACCGGCCAC 363
Query 411 TTGGTTCCTGGTGGCTCTGGACACCGGAAGCGATTTGTTTTGGTTGCCTTGCAATTGCGG 470
||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 364 TTGGTTCCTGGTGGCTCTGGACACCGGCAGCAATTTGTTTTGGTTACCTTGCAATTGCGG 423
Query 471 TTCCACTTGTATCCGTGACTTGAAAGA-AGTTGGACTTTCACAGAGTCGACCACTCAATC 529
||||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 424 TTCCACTTGTATCCGCGACTTAAAAGACA-TTGGACTTTCACAGAGTCGACCACTCAATC 482
Query 530 TATACAGCCCCAACACATCTTCTACAAGTTCAAGCATTAGATGCAGTGATGACCGTTGTT 589
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 483 TATACAGCCCCAACACATCTTCTACAAGTTCAAGCATTAGATGCAATGATGACCGTTGTT 542
Query 590 TTGGGTCGAGCCGGTGTTCTTCTCCTGCAAGTAGTTGCCCTTATCAGATCCAGTACCTTT 649
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TTGGGTCGAGTCAGTGTTCTTCTCCTGCAAGTAGTTGCCCTTATCAGATCCAGTACCTTT 602
Query 650 CTAAGGACACCTTTACCACCGGGACATTGTTTGAGGATGTATTGCATTTGGTCACAGAGG 709
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 603 CTAAGGACACCTTCACCACCGGGACATTGTTTGAGGACGTATTGCATTTGGTCACAGAGG 662
Query 710 ACGAGGGTTTAGAGCCTGTTAAAGCTAATATCACGCTTGGTTGCGGT-AAGAATCAGACA 768
||| || |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 663 ACGTGGATTTAGAGCCTGTTAAAGCTAATATCACGCTTGGTTGCGGTCAA-AATCAGACA 721
Query 769 GGTTTTCTCCAGAGTAGTGCGGCTGTTAATGGTCTTCTCGGGCTAGGTTTGAAAGATTAC 828
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 722 GGTTTTCTCCAGAGTAGTGCGGCTATTAATGGTCTTCTCGGGCTAGGTATGAAAGATTAC 781
Query 829 TCTGTTCCGAGCATACTGGCAAAAGCAAAAATCACTGCAAACTCTTTCTCAATGTGTTTC 888
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 782 TCTGTTCCGAGCATACTTGCAAAAGCTAAAATCACTGCAAACTCTTTCTCAATGTGTTTT 841
Query 889 GGGAATATCATTGACGTTGTCGGAAGAATCAGCTTCGGTGACAAAGGATACACAGACCAG 948
|||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 842 GGGAATATCATTGACGTTATCGGAAGAATCAGCTTCGGAGACAGAGGCTACACAGACCAG 901
Query 949 ATGGAGACGCCACTACTTCCTACCGAACCAAGTCCGACATATGCTGTGAGTGTGACCGAA 1008
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 902 ATGGAGACGCCACTACTTCCTACCGAACCAAGTCCGACATATGCTGTGAATGTGACTGAA 961
Query 1009 GTATCTGTAGGGGGAGATGCTGTTGGGGTTCAGCTGCTAGCTCTCTTCGACACTGGAACA 1068
||||| || |||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 962 GTATCCGTGGGGGGAGATGTTGTTGGGCTTCAGCTGCTAGCTCTCTTCGACACTGGAACA 1021
Query 1069 TCATTTACACATTTACTAGAACCAGAATATGGTCTTATTACCAAAGCTTTTGACGATCAT 1128
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TCATTTACACATTTACTAGAGCCAGAATATGGTCTTATTACCAAAGCTTTTGACGATCAT 1081
Query 1129 GTCACTGACAAGCGACGTCCGATTGATCCTGAGCTTCCATTTGAGTTCTGTTACGACTTA 1188
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1082 GTCACTGACAAGCGACGTCCGATTGATCCTGAGATTCCATTTGAGTTCTGTTACGACTTA 1141
Query 1189 AGTCCAAACAAAACAACCATTTTATTCCCCAGAGTAGCGATGACTTTTGAAGGAGGATCC 1248
|||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1142 AGTCCAAACACTACAATCATTTTATTCCCCAGAGTAGTGTTGACTTTTGAAGGAGGATCC 1201
Query 1249 CAAATGTTTCTGAGAAATCCGCTTTTCATAGTGTGGAATGAGGACAATAGCGCCATGTAC 1308
| |||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 1202 CTAATGATTCTGAGAAACCCGCTTTTCACAGTGTGGAATGAGAACAATACCGCCATGTAC 1261
Query 1309 TGCTTGGGTATTCTGAAGAGCGTGGATTTCAAGATTAACATTATCGGACAGAACTTCATG 1368
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1262 TGCTTGGGTATTCTGAAGAGCGTGGATTTCAAGATTAACATTATCGGACAAAACTTCATG 1321
Query 1369 TCTGGCTACCGCATTGTATTCGACCGGGAGAGGATGATTTTGGGTTGGAAACGGTCTGAT 1428
|| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 1322 TCGGGCTACCGCATTGTATTTGACAGGGAGAGGATGATTTTGGGTTGGAAGCGGTCTGAT 1381
Query 1429 TGTTTTGAAGATGAAAGCTTGGAATCA-ACGACTCCTCCACCACCAGAGACTGAAGCTCC 1487
|||||||||||||||||||| | |||| | | ||||||||||||||||||||||||||||
Sbjct 1382 TGTTTTGAAGATGAAAGCTTAGCATCACA-GCCTCCTCCACCACCAGAGACTGAAGCTCC 1440
Query 1488 TTCACCAAGTGCCTCCACTCCGTTACCTAGTCTTCTTCCTCCTCCTGCTGCAGCTACACC 1547
| ||||||||| ||| |||| ||||||||| || ||||| | ||||||| ||||||||
Sbjct 1441 TGCACCAAGTGTATCCGCTCCACTACCTAGTCATCCTCCTCTTGCTGCTGCTGCTACACC 1500
Query 1548 TCCCCAAATAGACCCTCGTAACTCTACCAGAAACTCTGGCACAGGCACTGCAGCCAATCT 1607
|||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1501 GCCCCCAATAGACGCTCGTAACTCCACCAGAAACTCTGGCACAGGCACTGCAGCCAATCT 1560
Query 1608 -AGTCCCTCTCGCATCTCAACTCCTACTTCTCCTACCTCTTTTGGCCTTCCTCTGATTCA 1666
| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1561 CA-TCCCTCTCGCATCTCAACTCCTACTTCTCATACCTCTTTTGGCCTTTCTCTGATTCA 1619
Query 1667 TTTTGTGTTGGTTTGA 1682
||||||||||||||||
Sbjct 1620 TTTTGTGTTGGTTTGA 1635
> Ahg898036 jgi|Araly1|898036|Al_scaffold_0005_2002
Length=1596
Score = 1358 bits (735), Expect = 0.0
Identities = 1341/1627 (82%), Gaps = 68/1627 (4%)
Strand=Plus/Plus
Query 73 ATGGTCGTTGCACGCCAAGTGTTTGTGTTATTGTCTCTGTTAGTTGTGTGTTGGGGATTG 132
|||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 1 ATGGACGTTGCACGCCAAGTGTTTGTGTTATTGTCTGTGTTAGTTGTGAGTTGGGTATTT 60
Query 133 GAGAGATGTGAGGCTTCTGGGAAGTTTAGCTTTGAAGTTCACCATATGTTCTCTGATAG- 191
|||||||||||||||||||||||||| | || ||||| ||||| |||||||||||| |
Sbjct 61 GAGAGATGTGAGGCTTCTGGGAAGTTCGGATTCGAAGTCCACCACATGTTCTCTGAT-GC 119
Query 192 GGTCAAGCAAAGTCTTGG-ACTTGACGATCTAGTGCCGGAAAAGGGAAGTTTGGAGTACT 250
||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||
Sbjct 120 CGTCAAGCAAAGTCTTGGTA-TTGACGATCTAGTGCCGGAACAGGGAAGTTTAGAGTACT 178
Query 251 TCAAGGTTTTGGCACAGCGTGATCGGTTGATCAGAGGTCGAGGTCTTGCCTCCAACAACG 310
||||||||||||| || |||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 179 TCAAGGTTTTGGCTCACCGTGATCGCTTGATCAGGGGTCGAGGTCTTGCCTCTAACAACG 238
Query 311 AAGAAACCCCTATTACTTTC-ATGCGGGGAAATCGCACGATTTCAATCGACCTTCTGGGA 369
|||| ||||| | |||||| ||| ||||||| | |||| |||||||| | |||||||||
Sbjct 239 AAGATACCCCGGTCACTTTCGATG-GGGGAAACCTCACGGTTTCAATCAAGCTTCTGGGA 297
Query 370 TTCTTGCACTACGCCAATGTCTCTGTGGGAACACCGGCC-ACTTGGTTCCTGGTGGCTCT 428
| | || | ||||||||||| ||||| |||||||| || ||| |||||||||||||||
Sbjct 298 TCCCTGTATTACGCCAATGTATCTGTCGGAACACC-ACCTTCTTCGTTCCTGGTGGCTCT 356
Query 429 GGACACCGGAAGCGATTTGTTTTGGTTGCCTTGCAATTGCGGTTCCACTTGTATCCGTGA 488
|||||| || ||||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 357 GGACACAGGCAGCGATTTGTTTTGGTTGCCTTGCAATTGCGGTACTACTTGTATCCGCGA 416
Query 489 CTTGAAAGA-AGTTGGACTTTCACAGAGTCG-ACCACTCAATCTATACAGC-CCCAACAC 545
|||| | || | ||||| || |||||||| | ||||||||||||||||| | |||||| |
Sbjct 417 CTTGGAGGACA-TTGGAGTTCCACAGAGT-GTACCACTCAATCTATACA-CTCCCAACGC 473
Query 546 ATCTTCTACAAGTTCAAGCATTAGATGCAGTGATGACCGTTGTTTTGGGTCGAGCCGGTG 605
|||| |||| |||||||||||| |||||| || | ||||||||||| || | |||
Sbjct 474 ATCTACTACGAGTTCAAGCATTCTATGCAGCGACAAACGTTGTTTTGGATCTAAAAAGTG 533
Query 606 TTCTTCTCCTGCAAGTAGTTGCCCTTATCAGAT--CCAGTACCTTTCTAAG-GACACCTT 662
|||||||||| ||||| ||||||||||||||| || ||| | |||| | |||
Sbjct 534 TTCTTCTCCTAAAAGTATTTGCCCTTATCAGATTTCC--TAC-T--CTAACAG-CACAGG 587
Query 663 TACCACCGGGACATTGTTTGAGGATGTATTGCATTTGG-TCACAGAGGACGAGGGTTTAG 721
||||| ||||||||||| |||||||||||||| ||| | |||||||| ||| ||||
Sbjct 588 CACCACAGGGACATTGTTACAGGATGTATTGCATCTGGCT-ACAGAGGATGAGAATTTA- 645
Query 722 A-GCCTGTTAAAGCTAATATCACGCTTGGTTGCGGTAAGAATCAGACAGGT-T-TTCTCC 778
| |||||| ||| ||||| ||||||||||||||||| |||| ||||||||| | || ||
Sbjct 646 ACGCCTGTCAAAACTAATGTCACGCTTGGTTGCGGTCAGAAGCAGACAGGTCTATT-TC- 703
Query 779 AGAGTAGTGCGGCTGTTAATGGTCTTCTCGGGCTAGGTTTGAAAGATTACTCTGTTCCGA 838
|||| | |||| |||||| |||| ||||| ||| ||||||| || ||||||||||
Sbjct 704 AGAGAAACAATTCTGTGAATGGTGTTCTTGGGCTTGGTATGAAAGAATATTCTGTTCCGA 763
Query 839 GCATACTGGCAAAAGCAAAAATCACTGCAAACTCTTTCTCAATGTGTTTCGGGAATATCA 898
|| | ||||||||||| || ||||| ||| |||| |||||||||||||||||| | |||
Sbjct 764 GCCTTCTGGCAAAAGCGAATATCACCGCAGACTCCTTCTCAATGTGTTTCGGGCGTGTCA 823
Query 899 TTGACGTTGTCGGAAGAATCAGCTTCGGTGACAAAGGATACACAGACCAG-ATGGAGACG 957
||| |||||| ||||||||||| ||||| |||||||| |||||||||||| | ||| ||
Sbjct 824 TTGGCGTTGTTGGAAGAATCAGTTTCGGAGACAAAGGCTACACAGACCAGGA-GGAAACT 882
Query 958 CCACT-ACTTCCTACCGAACCAAGTCCGACATATGCTGTGAGTGTGACCGAAGTATCTGT 1016
||| | | ||| | | ||||||| || |||||| | ||| ||||| | |||||| ||
Sbjct 883 CCATTCATTTC-TGTTGCACCAAGTACGGCATATGGTTTGAACGTGACGGGAGTATCAGT 941
Query 1017 AGGGGGAGATGCTGTTGGGGTTCAGC-TGCTAGCTCTCTTCGACACTGGAACATCATTTA 1075
||||||||| ||||||| || || || | || ||||||||||| |||||||||
Sbjct 942 GGGGGGAGATCCTGTTGGCACTC-GCCTGTTTGCAAAATTCGACACTGGCTCATCATTTA 1000
Query 1076 CACATTTACTAGAACCAGAATATGGTCTTATTACCAAAGCTTTTGACGATCATGTC-ACT 1134
|||| || || || |||| ||||||| || |||||||| |||||||||||| |||| |
Sbjct 1001 CACACTTGCTGGAGCCAGCATATGGTGTTCTTACCAAATCTTTTGACGATCTTGTCGAG- 1059
Query 1135 GACAAGCGACGTCC-GATTGATCCTGAGCTTCCATTTGAGTTCTGTTACGACTTAAGTCC 1193
||||||||||| || | ||||||||||| |||| |||||||||||||||||||| || ||
Sbjct 1060 GACAAGCGACGCCCAG-TTGATCCTGAGTTTCCGTTTGAGTTCTGTTACGACTTGAGCCC 1118
Query 1194 AAACAAAACAACCATTTTATTCCCCAGAGTAGCGATGACTTTTGAAGGAGGATCCCAAAT 1253
|||| |||| ||| ||||||| |||| ||||||||||| |||||||||| ||||
Sbjct 1119 AAACGCCACAAGCATAGAATTCCCCTTTGTAGAGATGACTTTTGTAGGAGGATCCAAAAT 1178
Query 1254 GTTTCTGAGA-AATCCGCTTTTCATAGTGTGGAATGAGG-AC-A-AT----AGCGCCATG 1305
|||| | | |||||| |||||| || ||| | ||| | | || || | |||
Sbjct 1179 CATTCTCA-ATAATCCGTTTTTCACAGCACGGACTCAGGCAAGACATGGTGAGGGTAATG 1237
Query 1306 T-A----CTGCTTGGGTATTCTGAAGAGCGT-GGATTTCAAGATTAACATTATCGGACAG 1359
| | ||||||||| ||||||||||||| || | ||||||||||| | |||||||||
Sbjct 1238 TGATGTACTGCTTGGGCGTTCTGAAGAGCGTAGG-TCTCAAGATTAACGTCATCGGACAG 1296
Query 1360 AACTTCATGTCTGGCTACCGCATTGTATTCGACCGGGAGAGGATGATTTTGGGTTGGAAA 1419
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AACTTTGTGGCCGGCTACCGCATTGTATTCGACCGGGAGAGGATGATTTTGGGTTGGAAG 1356
Query 1420 CGGTCTGATTGTTTTGAAGATGAAAGCTTGGAATCAACGACTCCTCCACCACCAGAGA-C 1478
| |||| ||||||||||||||||||||||||||| || ||||| ||||||||||| |
Sbjct 1357 CCGTCTCTTTGTTTTGAAGATGAAAGCTTGGAATCTACAACTCC---ACCACCAGAGATC 1413
Query 1479 TGAAGCTCCTTCACCAAGTGCCTCCACTCCGTTACCTAGT-CTTCTTCCTCCTCCTGCTG 1537
||||||||| ||||||||| ||| |||| |||| || || ||||||||| ||| |
Sbjct 1414 -GAAGCTCCTGCACCAAGTGTATCCGCTCCACCACCTCGTTCT-CTTCCTCCTGCTGTTT 1471
Query 1538 CAGCTACACCTCCCCAAATAGACCCTCGTAACTCTACCAG-AAACTCTGGCACAGGCACT 1596
| |||||||| |||| || |||||||||||||| || || |||| |||| ||||||| |
Sbjct 1472 CTGCTACACCGCCCCCTATCGACCCTCGTAACTCCAC-AGGAAACCCTGGTACAGGCAGT 1530
Query 1597 GCAGCCAATCT-AGTCCCTCTCGCATCTCAACTCCTACTTCTCCTACCTCTTTTGGCCTT 1655
|||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 GCAGCCGATCTCA-TCCCTCTCGCATCTCAACTCCTACTTCTCCTACCTCTTTTGGCCTT 1589
Query 1656 CCTCTGA 1662
|||||||
Sbjct 1590 CCTCTGA 1596
> Ahg937996 jgi|Araly1|937996|scaffold_502187.1
Length=1286
Score = 804 bits (435), Expect = 0.0
Identities = 613/699 (88%), Gaps = 11/699 (2%)
Strand=Plus/Plus
Query 602 GGTGTTCTTCTCCTGCAAGTAG-TTGCCCTTATCAGATCCAGTACCTTTCTAAGGA-CAC 659
|||||||||||||||||||| | ||||||||||||||||| |||||||| ||| | |||
Sbjct 397 GGTGTTCTTCTCCTGCAAGT-GTTTGCCCTTATCAGATCCCGTACCTTTTTAA-CACCAC 454
Query 660 CTTTACCACCGGGACATTGTTTGAGGATGTATTGCATTTGGTCACAGAGGACGAGGGTTT 719
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 ATCCACCAGAGGGACATTGTTTGAGGATGTATTGCATTTGGTCACAGAGGACGAGGGTTT 514
Query 720 AGAGCCTGTTAAAGCTAATATCACGCTTGGTTGCGGTAAGAATCAGACAGGTTT-TCTCC 778
||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| | ||
Sbjct 515 AGAGCCTGTCAAAGCTAATATCACGCTTGGTTGTGGTCAGAATCAGACAGGTTTGTATCG 574
Query 779 AGAGTAGTGCGGCTGTTAATGGTCTTCTCGGGCTAGGTTTGAAAGATTACTCTGTTCCGA 838
||| ||| |||||| || |||||||| ||||| ||| ||||||||||||| |||||||
Sbjct 575 -GAGAAGTTTGGCTGTGAACGGTCTTCTTGGGCTTGGTATGAAAGATTACTCAGTTCCGA 633
Query 839 GCATACTGGCAAAAGCAAAAATCACTGCAAACTCTTTCTCAATGTGTTTCGGGAATATCA 898
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 634 GTGTACTGGCAAAAGCAAATATCACTGCAAACTCTTTCTCAATGTGTTTCGGGAATATTA 693
Query 899 TTGACGTTGTCGGAAGAATCAGCTTCGGTGACAAAGGATACACAGACCAGATGGAGACGC 958
||||| || |||||||||||||||||||||||| ||| |||||||||||| | ||||| |
Sbjct 694 TTGACTTTATCGGAAGAATCAGCTTCGGTGACAGAGGCTACACAGACCAGCTAGAGACAC 753
Query 959 CACTACTTCCTACCGAACCAAGTCCGACATATGCTGTGAGTGTGACCGAAGTATCTGTAG 1018
||||| |||||| ||||||| ||||||||||||||||| ||||||||||||| | || |
Sbjct 754 CACTAGTTCCTATTGAACCAAATCCGACATATGCTGTGAATGTGACCGAAGTAACAGTGG 813
Query 1019 GGGGAGATGCTGTTGGGGTTCAGCTGCTAGCTCTCTTCGACACTGGAACATCATTTACAC 1078
|||||||| | | | ||||| |||||||||||||||||||||| |||||||||||||
Sbjct 814 GGGGAGATATTCTCAAGATTCAGATGCTAGCTCTCTTCGACACTGGCACATCATTTACAC 873
Query 1079 ATTTACTAGAACCAGAATATGGTCTTATTACCAAAGCTTTTGACGATCATGTCACTGACA 1138
| ||||| || |||| |||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 874 ACTTACTGGAGCCAGCATATGGTCTTCTTACCAAAGCTTTTGACGATCATGTAACTGATA 933
Query 1139 AGCGACGTCCGATTGATCCTGAGCTTCCATTTGAGTTCTGTTACGACTTAAGTCCAAACA 1198
||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 934 AGCGACGCCCGATCGATCCTGAGATTCCATTTGAGTTCTGTTACGACACAAGTCCAAATA 993
Query 1199 AAACAACCATTTTA-TTCCCCAGAGTAGCGATGACTTTTGAAGGAGGATCCCAAA-TGTT 1256
|||| | ||| | |||||||||||| |||||||||| |||||||||| ||| ||
Sbjct 994 TTACAAGC-TTTAAATTCCCCAGAGTAAATATGACTTTTGTAGGAGGATCC-AAACTGAC 1051
Query 1257 TCTGAGAAATCCGCTTTTCATAGTGTGGAATGAGGACAA 1295
||||||| |||||||||||| |||||||||||||| |||
Sbjct 1052 TCTGAGAGATCCGCTTTTCACAGTGTGGAATGAGG-CAA 1089
Score = 396 bits (214), Expect = 3e-109
Identities = 280/312 (90%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 61 GAGATTGAAGTCATGGTCGTTGCACGCCAAGTGTTTGTGTTATTGTCTCTGTTAGTTGTG 120
|||| | ||||||||| | ||||||||||||||||||||||||||||| ||||||| | |
Sbjct 9 GAGAGTAAAGTCATGGCCTTTGCACGCCAAGTGTTTGTGTTATTGTCTGTGTTAGTGGCG 68
Query 121 TGTTGGGGATTGGAGAGATGTGAG-GCTTCTGGGAAGTTTAGCTTTGAAGTTCACCATAT 179
||||||||| || ||||||||||| | | |||||||||| ||||| ||||||||||| ||
Sbjct 69 TGTTGGGGACTGCAGAGATGTGAGAG-TGCTGGGAAGTTCAGCTTCGAAGTTCACCACAT 127
Query 180 GTTCTCTGATAGGGTCAAGCA-AAGTCTTGGACTTGACGATCTAGTGCCGGAAAAGGGAA 238
||||||||||| ||||||||| || |||||| ||| |||||||||||| ||||||||||
Sbjct 128 GTTCTCTGATACGGTCAAGCAGAA-TCTTGGGTTTGGCGATCTAGTGCCCGAAAAGGGAA 186
Query 239 GTTTGGAGTACTTCAAGGTTTTGGCACAGCGTGATCGGTTGATCAGAGGTCGAGGTCTTG 298
||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 187 GTTTGGAGTACTTCAAGCTTTTGGCCCAGCGCGATCGGTTGATCAGAGGTCGAGGTCTTG 246
Query 299 CCTCCAACAACGAAGAAACCCCTATTACTTTCATGCGGGGAAATCGCACGATTTCAATCG 358
||||||||||||||||| ||||| |||||||||| | ||||||||||||| |||||||||
Sbjct 247 CCTCCAACAACGAAGAAGCCCCTGTTACTTTCATCCTGGGAAATCGCACGGTTTCAATCG 306
Query 359 ACCTTCTGGGAT 370
|| || ||||||
Sbjct 307 ACTTTTTGGGAT 318
> Ahg937995 jgi|Araly1|937995|scaffold_502186.1
Length=277
Score = 219 bits (118), Expect = 8e-56
Identities = 200/239 (84%), Gaps = 7/239 (3%)
Strand=Plus/Plus
Query 1430 GTTTTGAAGATGAAAGCTTGGAATCAACGACTCCTCCACCACCAGAGACT-GAAGCTCCT 1488
|||| |||||||||||||||||||| || | ||||||||||||||| | |||||||||
Sbjct 28 GTTTCGAAGATGAAAGCTTGGAATCTAC--C-ACTCCACCACCAGAGA-TCGAAGCTCCT 83
Query 1489 TCACCAAGTGCCTCCACTCCGTTACCTAGTCTTCTTCCTCCTCCTGCTGCAGCTACACCT 1548
||||||||| ||||| || |||| ||||| ||||||| || || | ||||||||
Sbjct 84 CCACCAAGTGTATCCACGCCACCACCTCTTCTTCCTCCTCCTGCTACTTCTGCTACACCA 143
Query 1549 CCCCAAATAGACCCTCGTAACTCTACCAGAAACTCTGGCACAGGCACTGCAGCCAATCT- 1607
|||| || || ||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 144 CCCCCGATGGATCCTCGTAACTCTACCAGAAACTCTGGCACAGGCGGTTCAGCCAACCTC 203
Query 1608 AGTCCCTCTCGCATCTCAACTCCTACTTCTCCTACCTCTTTTGGCCTTCCTCTGATTCA 1666
|| || ||| ||| |||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 204 AG-CCATCTTGCAGCTCAACTCCTACTTCTCCTACCACTTTTGGCCTTCTTCTGACTCA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5