BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51360.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348240 jgi|Araly1|348240|fgenesh1_pg.C_scaffold_5001632 1711 0.0
> Ahg348240 jgi|Araly1|348240|fgenesh1_pg.C_scaffold_5001632
Length=1542
Score = 1711 bits (926), Expect = 0.0
Identities = 1133/1228 (92%), Gaps = 33/1228 (3%)
Strand=Plus/Plus
Query 261 TCTACATTATGCGAATGTGACGATAGGGACACCGGCTCAATGGTTCTTGGTGGCATTAGA 320
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TCTGCATTATGCGAATGTGACGATAGGGACACCGGCTCAATGGTTCTTGGTGGCATTAGA 386
Query 321 CACAGGCAGTGATTTGTTTTGGTTACCTTGCAATTGCAATTCCACTTGTGTACGGAGTAT 380
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 387 CACAGGAAGTGATTTGTTTTGGTTACCTTGCAATTGCAATTCCACTTGCGTACGGAGTAT 446
Query 381 GGAGACTGACCAAGGCGAG------A-GAAT------A--A-AA--CTCAACATCTACAA 422
||||||||||||||||||| | |||| | | || ||||||||||||||
Sbjct 447 GGAGACTGACCAAGGCGAGACACACATGAATGCACAGAGGATAAGGCTCAACATCTACAA 506
Query 423 CCCCAGCAAATCAAAATCAAGCTCAAAGGTTACGTGCAATAGCACACTCTGTGCATTAAG 482
||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 CCCAAGCATATCAACATCAAGCTCAAAGGTTACGTGCAATAGCACACTCTGTGCATTAAG 566
Query 483 AAACAGATGCATTTCTCCGGTCAGCGATTGTCCTTACAGAATCCGATATCTCTCTCCGGG 542
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 567 AAACAGATGCATTTCTCCGCTCAGCGATTGTCCTTACAGAATCCGATATCTCTCGCCGGG 626
Query 543 AAGCAAAAGTACAGGTGTGTTGGTGGAGGATGTGATCCACATGAGCACTGAAGAAGGAGA 602
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 627 AAGCAAAAGCACAGGTGTGTTGGTGGAGGATGTGATCCACATGAGCACAGAAGAAGGAGA 686
Query 603 AGCTAGAGATGCTCGGATCACATTCGGATGTAGTGAGTCCCAACTAGGGTTGTTCAAAGA 662
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 687 AGCTAGAGATGCTCGGATCACATTCGGATGTAGTGAGACCCAACTAGGGTTGTTCCAAGA 746
Query 663 AGTGGCTGTAAATGGTATAATGGGACTTGCAATAGCCGACATAGCGGTTCCAAACATGTT 722
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 747 AGTGGCTGTAAATGGTATAATGGGACTTGCAATGGCCGACATAGCGGTTCCAAACATGTT 806
Query 723 GGTTAAAGCCGGTGTCGCGTCAGACTCTTTCTCAATGTGTTTTGGTCCTAATGGGAAAGG 782
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GGTTAAAGCCGGTGTGGCGTCAGACTCTTTCTCAATGTGTTTTGGTCCTAATGGGAAAGG 866
Query 783 AACAATCAGTTTCGGAGACAAAGGTAGCTCAGACCAGCTTGAGACTCCATTGAGTGGCAC 842
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 867 AACAATCAGTTTCGGAGACAAAGGTAGCTCAGACCAGCATGAGACTCCATTGGGTGGCAC 926
Query 843 CATCTCACCGATGTTTTACGATGTGAGCATCACCAAATTCAAGGTAGGAAAAGTTACGGT 902
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 927 CATCTCTCCGCTGTTTTACGATGTGAGCATCACCAAATTCAAGGTAGGAAAAGTGACGGT 986
Query 903 GGATACAGAATTCACCGCGACATTTGACTCTGGAACCGCGGTTACATGGCTGATCGAGCC 962
||| ||| |||||| ||||| |||||||||||||||||||||||| |||||| |||| ||
Sbjct 987 GGAAACAAAATTCAGCGCGATATTTGACTCTGGAACCGCGGTTACTTGGCTGCTCGATCC 1046
Query 963 TTACTACACTGCTCTAACAACAAACTTTCATCTCTCTGTACCAGACAGACGACTTTC-GA 1021
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1047 GTACTACACTGCTCTAACAACAAACTTTCATCTCTCTGTACCAGACAGACGACTTCCAGC 1106
Query 1022 AAAGTGTGGATAGC-CCTTTTGAGTTTTGCTACATTATCACATCAACTTCAGATGAAGAT 1080
||| |||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1107 AAA-TGTGGATAGCACCTTT-GAGTTTTGCTACATTATTACATCAACCTCAGATGAAGAG 1164
Query 1081 AAGCTTCCTTCAGTTAGCTTTGAGATGAAAGGAGGAGCTGCTTATGATGTTTTCAGCCCC 1140
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1165 AAGCTTCCTTCAATTAGCTTTGAAATGAAAGGAGGAGCTGCTTATGATGTTTTCAGCCCC 1224
Query 1141 ATACTTGTCTTCGACACTTCCGATGGTAGTTTTCAAGTCTATTGTTTGGCTGTCTTAAAG 1200
||||||||||||||||| ||||||||||||||||||||||| || ||||| || || |||
Sbjct 1225 ATACTTGTCTTCGACACCTCCGATGGTAGTTTTCAAGTCTACTGCTTGGCCGTTTTGAAG 1284
Query 1201 CAAGTTAATGCTGACTTCAGCATCATCGGACAAAATTTCATGACCAACTACAGAATCGTC 1260
|||| ||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1285 CAAGATAAAGCTGATTTCAACATCATCGGACAAAACTTCATGACCAACTACAGAATCGTC 1344
Query 1261 CACGATCGTGAGAGAAGGATCTTAGGATGGAAAAAATCTAATTGTAATGATACTAACGGT 1320
|| ||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1345 CATGATCGCGAGAGAATGATCTTGGGATGGAAAAAATCCAATTGTAATGATACTAACGGT 1404
Query 1321 TTCACAGGACCTACCGCTTTAGCAAAACCGCCATCGATGGCACCAAC-GTCGTCTCCAAG 1379
||||| |||||||||| || || ||||||||| || | | || | ||||||||||
Sbjct 1405 TTCACGGGACCTACCGATT---CA---CCGCCATCGCTGCCGC-AATTGCCGTCTCCAAG 1457
Query 1380 AACCATCAACCTTTCCAGTCGTTTGAACCCTCTGGCTGCGGCTTCTTCACTTTTCATCAT 1439
|||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1458 AACCATTAACCCTTCCAGCCGTTTGAACCCTCTGGCTGC---TTCTTCACTTTTCATCAT 1514
Query 1440 TTGCTTCATTTCTTTTGTATCTTTGTGA 1467
|||||||||||||||| ||| |||||||
Sbjct 1515 TTGCTTCATTTCTTTTATATGTTTGTGA 1542
Score = 394 bits (213), Expect = 1e-108
Identities = 245/260 (94%), Gaps = 3/260 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCAGTTTGGATTCCTCTGTGCTATGAGTTTGGGATTGGCTTCTTCTGTTTCAGGA 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 31 ATGTTTCAGTTTGGATTCCTCTGTATTATGAGTTTGGGATTGGCTTCTTCTGTTTCAGGA 90
Query 61 TCACTTTCCTTTGAAATTCACCATAGATTCTCAGAGCAAGTCAAAACCGTTCTAGGTGGC 120
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 91 TCACTCTCCTTTGAAATCCACCATAGATTCTCAGAGCAAGTCAAAACGGTTCTAGGTGGC 150
Query 121 CATGGTTTGCCTGAAATGGGCAGCCTAGACTACTACAAGGCCTTGGTTCATCGTGATCGA 180
||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 151 CATGGCTTGCCTGAAATGGGCAGCCTCGACTACTACAAGGCGTTGGTTCACCGTGATCGA 210
Query 181 GGTCGCCAGCTAACCTCCAACAACAACAATCAGACAACTATTTCTTTCGCTCAAGGCAAC 240
||||| | |||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 211 GGTCGGCGGCTAACAT-C--CAACAACAATCAGACAACTATTTCTTTCGCTCAAGGCAAC 267
Query 241 TCCACCGAAGAAATCAGTTT 260
||||||||||||||||||||
Sbjct 268 TCCACCGAAGAAATCAGTTT 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5