BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51380.1
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323696 jgi|Araly1|323696|fgenesh1_pm.C_scaffold_5001240 494 2e-139
> Ahg323696 jgi|Araly1|323696|fgenesh1_pm.C_scaffold_5001240
Length=312
Score = 494 bits (267), Expect = 2e-139
Identities = 298/313 (95%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 1 ATGGCCAACTCCAAACGTTTGTTTGGTGTTGTAAGAAGGAAACTTCTCCGACGATCTCAA 60
|||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCCAATTCCAAACGATTGTTTGGCGTTGTACGAAGGAAACTTCTCCGACGATCTCAC 60
Query 61 AGCAGAATCACAATCATTCGCTCTTCAGCTCCAGAAACAACTCGAGAAGAGATTGCCGCC 120
||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 61 AGCAGAATCACTATCATTCGCTCATCAGCTCCAGAAACAACTCAAGAAGAGATTGCCGCA 120
Query 121 GTTAAAATCCAAGCCTTT-TTCAGAGGGCACCTGGCAAGAAGAGCGTTTAAAGCATTGAA 179
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GTTAAAATCCAA-TCTTTCTTCAGAGGTCACCTGGCAAGAAGAGCGTTTAAAGCATTGAA 179
Query 180 GAGTCTGGTGAAGTTACAGGCGGTGGCTAGAGGAGTGCTTGTGAGGAGACAAGCACGAAT 239
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 180 GAGTCTGGTGAAGTTACAGGCGGTGGCGAGAGGAGTGCTTGTGAGGAGACAAGCTCGAAT 239
Query 240 TGCTTTACATTGTATGCATGCTCTTGCTCGCTTGCAGGTTAGGGTTCGTGCTCGTCAGCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGCTTTACATTGTATGCATGCTCTTGCTCGCTTGCAGGTTAGGGTTCGTGCTCGTCAGCT 299
Query 300 TCTCTCTCATTAA 312
|||||||||||||
Sbjct 300 TCTCTCTCATTAA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10988809632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5