BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51390.1
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938002 jgi|Araly1|938002|scaffold_502193.1 1644 0.0
> Ahg938002 jgi|Araly1|938002|scaffold_502193.1
Length=1063
Score = 1644 bits (890), Expect = 0.0
Identities = 999/1052 (95%), Gaps = 5/1052 (0%)
Strand=Plus/Plus
Query 137 CAAAACATGGGCGTTTGTTGCCCTTTCCTTCAACCCTGGGATCGAGCTCGTGATCAATGT 196
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 15 CAAACCATGGGCGTTTGTTGCCCTTTCCTTCAACCCTGGGATCGAGCTCGTGATCAATTT 74
Query 197 CTCCTCAACCTCCCTTGTCTCTCCGATCCTGTTCGAAGATCTTCTCTACTTCTGAAATTG 256
||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 75 CTCATCAACCTTCCTTGTCTCTCCGATCCTGTTCGAAGATCTTCTCTGCTTATGAAATTA 134
Query 257 GCACTAGTAGCTCTCCACCTCGTCTTTATCGGCTTTCTCTTCCTTTTCGATGCTGAATTT 316
|||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 135 GCACTAGTGGTTCTCCACCTCGTCTTTATCGGCTTTCTCTTCCTTTTCGATGCAGATTTT 194
Query 317 ATTGAGAAAACTAAACGAGATCCATGGTATATGGGCTGTTATATCTTACTGTTTTCTGCA 376
|||||||| |||||||||||||||||||| |||||||||||| | || |||||||||||
Sbjct 195 ATTGAGAAGACTAAACGAGATCCATGGTACATGGGCTGTTATTTGTTGCTGTTTTCTGCC 254
Query 377 ACGCTTCTGCAGTATTTTGTAACTTCTGGCTCTTCACCTGGGTATGTTGTTGATGCAATG 436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 ACTCTTCTGCAGTATTTTGTAACTTCTGGCTCTTCACCTGGGTATGTTGTTGATGCAATG 314
Query 437 AGGGATGTTTGCGAGGCTAGTGCAATGTATAGAAACCCATCTACGAC--CTCAATACAAC 494
||||||||||||||| ||||||||||||||||||||||| || | | |||||||||||
Sbjct 315 AGGGATGTTTGCGAGACTAGTGCAATGTATAGAAACCCA-CTT-GCCTGCTCAATACAAC 372
Query 495 ATGCTTCCAGAAAAAGTGAGAGCGTTGTTGTTAATGTCGAAGGAGGATCAGCCTCATGTC 554
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 373 ATGCTTCCAGAAAAAGTGAGAGCGTTGTTGTTAATATGGAAGGAGGATCAGCCTCATGTG 432
Query 555 CCAGAAGGCCTCCAACGCCCTGGGGGAAGTTGGTTCTGGACTTGTACCCTCCAGGGACAT 614
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CTAGAAGGACTCCAACGCCCTGGGGGAAGTTGGTTCTGGACTTGTACCCTCCAGGGACAT 492
Query 615 CCATTAGAAATTTGACATGCGGCTATTGTCATGTGGAGCAGCCTCCACGAACCAAACATT 674
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CTATAAGAAATTTGACATGCGGCTATTGTCATGTGGAGCAGCCTCCACGAACCAAACATT 552
Query 675 GTCATGATTGTGATCGATGTGTTCTTCAGTTTGATCATCACTGTGTTTGGTTAGGAACAT 734
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 553 GTCATGATTGTGATCGATGTGTTCTTCAGTTTGATCACCACTGTGTTTGGCTAGGAACAT 612
Query 735 GTATAGGCCAGAAAAACCATAGTAAATTCTGGTGGTACATCTGTGAAGAGACAACTCTAT 794
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 613 GTATAGGCCAAAAAAACCATTGTAAATTCTGGTGGTACATCTGTGAAGAGACAACTCTAT 672
Query 795 GCATCTGGACGCTCATCATGTACGTTGACTACCTGAGTAATGTAGCAAAACCTTGGTGGA 854
|||||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||
Sbjct 673 GCATCTGGACGCTCATCATGTATGTTGACTACCTGAGTGACGTAGCAAAGCCTTGGTGGA 732
Query 855 AGAATGCAATTATCATACTGCTGCTTGTCATATTGGCGATCTCTTTGATTTTTGTGCTGC 914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 733 AGAATGCAATTATCATACTGCTGCTTGTCATATTGGCGATCTCTTTGATTTTTGTGATGC 792
Query 915 TTCTATTGATTTTTCACAGCTACCTAATTTTGACAAATCAAAGCACTTATGAACTTGTGA 974
|||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 793 TTCTATTGATTTTTCACAGCTATCTAATTCTGACAAATCAAAGCACTTACGAACTTGTGA 852
Query 975 GACGAAGACGTATTCCATACATGAGGAATATTCCGGGACGAGTGCATCCGTTTAGCAGAG 1034
|||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 853 GACGAAGACGTATTCCATACATGAGGAATATTCCGGAACGAGTGCACCCTTTTAGCAGAG 912
Query 1035 GAATTCGGAGGAACCTATACAACGTCTGTTGCGGAAACTATAATCTAGACTCACTTCCCA 1094
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 913 GAATTCGGAGGAACCTATACAACGTCTGTTGCGGAAATTATAATCTAGACTCACTCCCCA 972
Query 1095 CAGCGTTTGAACTCGAGGATAGATCAAGACCCTACACCTGCATCGATATGTTGAAATGTC 1154
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 973 CTGCGTTTGAACTTGAGGATAGATCAAGACCCTACACTTGCATCGATATGTTGAAATGTC 1032
Query 1155 GCTGCTGCTAAGTTTTTCATTTATAGTTTTAT 1186
|||||||||||||||| |||||||||||||||
Sbjct 1033 GCTGCTGCTAAGTTTT-CATTTATAGTTTTAT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5