BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51400.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938003 jgi|Araly1|938003|scaffold_502194.1 1269 0.0
Ahg938002 jgi|Araly1|938002|scaffold_502193.1 220 1e-56
> Ahg938003 jgi|Araly1|938003|scaffold_502194.1
Length=879
Score = 1269 bits (687), Expect = 0.0
Identities = 791/843 (94%), Gaps = 0/843 (0%)
Strand=Plus/Plus
Query 28 TCATCATCAATGGCTGCCTCATACCACGTCCGATCTAGTAGCTTACCAGCTCGGCTACAC 87
||||||||||||||||| || || ||| |||||||| ||||||||||||||||| |||||
Sbjct 12 TCATCATCAATGGCTGCTTCTTATCACATCCGATCTTGTAGCTTACCAGCTCGGTTACAC 71
Query 88 CCACATGGTCTCAACCAAATTCAGCAACTCCTTAATAAGCTTCGTGCAGATGATAACAAT 147
||||||||||||||||| ||||||||| |||| ||| |||||| ||||||||||||||||
Sbjct 72 CCACATGGTCTCAACCAGATTCAGCAAGTCCTGAATCAGCTTCCTGCAGATGATAACAAT 131
Query 148 AGTCTCTCACTTCTCTCAAATCTCTACGACTCTGTCTCTCATCTTTTCAACGATTCACCT 207
||||| | ||||||||| |||| |||||||||||||||||||| |||||||| ||||||
Sbjct 132 AGTCTATTGCTTCTCTCACATCTATACGACTCTGTCTCTCATCTCTTCAACGACTCACCT 191
Query 208 TCTTCACTTCTAGTCCCTCATCACTCTTTCTTCACTCACCTTCTTGATCTCTCCCTTTTA 267
|||||||| ||| | |||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 192 TCTTCACTACTACTACCTCATCACTCTTTCTTCACCCACCTTCTTGATCTCTCTCTTGTA 251
Query 268 CACCTTGACTTGTGTTCCAAGCTAAGAGACATCACTTGCCGCATCAAGGATTGCCTCCGC 327
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 252 CACCTTGACTTGTGCTCCAAGCTTAGAGACATCACTTGCCGCATCAAGGACTGCCTCCGC 311
Query 328 GACCTCCGTTCTGCTTTCAGACGGAGGAGACACAGTGGAGATTCTACCATTCGGTGTCAC 387
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 312 GACCTCCGTTCTGCTTTCAGACGGAGGAGACACAGTGGAGATTCTACCATACGCTGTCAC 371
Query 388 GTCAAAGCTTTTATCCGCTCTAGGAAAGCGGTTCATAAGGACATTGCTAAGCTACTCTTG 447
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GTCAAAGCCTTTATCCGCTCTAGGAAAGCGGTTCATAAGGACATTGCTAAGCTACTCTTG 431
Query 448 TTGCTCAAACAAACCGGCCTATCCTCATCTGAGTCCTCTCATCCCTTGATCACACTGCTC 507
|||||||||||||||||||| ||||| || |||||| |||||||||||||||||||||||
Sbjct 432 TTGCTCAAACAAACCGGCCTTTCCTCCTCCGAGTCCACTCATCCCTTGATCACACTGCTC 491
Query 508 CAACAAGTTTGTTCCCAAACATGTCAAACCTTTAGGACAGTCTTGTTGTCCCTATCCACA 567
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 492 CAACAAGTTTGTTCCCAAACATGTCATTCCTTTAGGACAGTCTTGTTGTCCCTATCCACA 551
Query 568 GCTGTACCTAAGCCCAGGCCTTCCAAATGGGCCCTGGTCACCAAACTGGTGATCAAGAAC 627
||||| || ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 552 GCTGTTCCCAAGCCTAGGCCTTCCAAATGGGCCTTGGTCACCAAACTGGTGATCAAGAAC 611
Query 628 GTTACTAGTACAAGTGGTCAAGTTAGGACTGGACACAGAAACGAATTCCAGATGATGGAC 687
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 612 GTTACTAGTACAAGTGGTCAAGTTCGGACTGGACACAGAAACGAATTCCATATGATGGAC 671
Query 688 GAAGAACTGCGAAGATTCAGCATGGCAGAAGAGATAAAGAAGGATCGGATCAAGTCTATG 747
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 672 GAAGAACTGCGAAGATTCAGCTTAGCAGAAGAGATAAAGAAGGATCGCATCAAGTCTATG 731
Query 748 ATCACCAACTTGGATAAAGTAGATGTAGCGGTTGAAGATCTGGAGGAGTCGCTCGAAAGA 807
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 732 ATCACCAACTTGGATCACGTAGATGTAGCTGTTGAAGATCTGGAGGAGTCGCTCGAAAGA 791
Query 808 TTGTACAGACGTATGATCCAAGCTAGAGTTTCTTTATTGAACATACTCTCTTTGCATATA 867
|||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 792 TTGTACAGGCATATGATCCAAGCTAGAGTTTCTCTATTGAACATACTGTCTTTGCATATA 851
Query 868 TAA 870
|||
Sbjct 852 TAA 854
> Ahg938002 jgi|Araly1|938002|scaffold_502193.1
Length=1063
Score = 220 bits (119), Expect = 1e-56
Identities = 132/138 (96%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 969 ATAAAACTATAAATGAAAAACTTAGCAGCAGCGACATTTCAACATATCGATGCAGGTGTA 1028
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1063 ATAAAACTATAAATG-AAAACTTAGCAGCAGCGACATTTCAACATATCGATGCAAGTGTA 1005
Query 1029 GGGTCTTGATCTATCCTCGAGTTCAAACGCTGTGGGAAGTGAGTCTAGATTATAGTTTCC 1088
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1004 GGGTCTTGATCTATCCTCAAGTTCAAACGCAGTGGGGAGTGAGTCTAGATTATAATTTCC 945
Query 1089 GCAACAGACGTTGTATAG 1106
||||||||||||||||||
Sbjct 944 GCAACAGACGTTGTATAG 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5