BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51410.1 Length=956 Score E Sequences producing significant alignments: (Bits) Value Ahg485493 jgi|Araly1|485493|fgenesh2_kg.5__1485__AT3G51410.1 699 0.0 > Ahg485493 jgi|Araly1|485493|fgenesh2_kg.5__1485__AT3G51410.1 Length=792 Score = 699 bits (378), Expect = 0.0 Identities = 428/452 (95%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 65 TTTTCTTCAGCAGAATTAAGAAACATGGCATTTCCAGAAACCAAACTCCAAATG-CCAGT 123 |||||||||||||||| ||||||||||||||| || ||||||||||| |||||| ||| | Sbjct 1 TTTTCTTCAGCAGAATCAAGAAACATGGCATTCCCTGAAACCAAACTTCAAATGCCCA-T 59 Query 124 TAGATCTATAAGTCTTCCATCAAGAATCCACCATCCTTCTGCTAAGTTTCAAGCTGCTCT 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TAGATCTATAAGTCTTCCATCAAGAATCCACCATCCTTCTGCTAAGTTTCAAGCTGCTCT 119 Query 184 CTCTCAGATTCATCTCTTCCAAAACTCATCTGATTCTCAATCTCTTCACGCCTCGTTACT 243 ||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 120 CTCTCAGATTCATCTTTTCCAAAACTCATCTGATTCACAATCTCTTCAAGCCTCATTACT 179 Query 244 CAACCTCTCTGAGCTTTACCATTCCCTTCACCAACTCAATCACTCTCTTCCCACAGCTCA 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CAACCTCTCTGAGCTTTACCATTCCCTTCACCAACTCAATCACTCTCTTCCCACAGCTCA 239 Query 304 AGCTGAACATTCTCTTGACGTGTCAGCCACGTTACTAGACTCTTGCGACGCAGCGAGAAA 363 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 AGCTGAACATTCTCTTGACGTGTCCGCCACGTTACTAGACTCTTGCGACGCAGCGAGAAA 299 Query 364 CCTAGTTCTCACTCTCAGAGAGCATCTCCTTAATCTTCAGTCTGCA-TTGAGAAGAAAAG 422 |||| | || || ||||||||||||||||| |||||||||||||| || || ||||| | Sbjct 300 CCTAATCCTAACACTCAGAGAGCATCTCCTCAATCTTCAGTCTGCGCTT-AGGAGAAAGG 358 Query 423 ACAAATCCATGGAAGTTCAGATCAAAGAGTACTTTTCCTTTAGGAAGAAGATCAAGAAAG 482 | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 359 ATAAATCCATGGAAGTTCAGATCAAAGAGTACTTTTCCTTCAGGAAAAAGATCAAGAAAG 418 Query 483 AGACTAACAAGCTTCTTCTTGGCCTCAAGAAG 514 |||||||||||||||||||||||||||||||| Sbjct 419 AGACTAACAAGCTTCTTCTTGGCCTCAAGAAG 450 Score = 538 bits (291), Expect = 3e-152 Identities = 326/343 (95%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 548 GTCTCCATCTTCCGCTCTCTTTTCATGTTCCTGTCCACAACATCAACAATGAAGACAAAG 607 ||||| ||||||||||||||||||||||||||||| |||||||| || | ||||||||| Sbjct 451 GTCTCTATCTTCCGCTCTCTTTTCATGTTCCTGTCGACAACATCGACCGTAAAGACAAAG 510 Query 608 ACATGTTCTCTCAAATTCGTCTCCAGGCTGATCAGTGGTGGTCACCGATCGTCATCGTCG 667 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 511 ACATGTTCTCTCAAATTCGTCTCCAAGCTGATCAGTGGTGGTCACCGATCGTCGTCGTCG 570 Query 668 ATAATGAGCGAGTTGCAGAACT-TGGATGCAGTTCTACGTTCAGATGGGGATAACTCCAA 726 |||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||| Sbjct 571 ATAATGAGCGAGTTGCAGAA-TGTTGATGTGGTTCTACGTTCAGATGGGGATAACTCCAA 629 Query 727 GGAAATTAAGAAGATGTTAGAGAGATTAGAGGAAAGAACAGAGGAACTTGAGACTGCACT 786 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 630 GGAAATGAAGAAGATGTTAGAGAGATTAGAGGAAAGAACAGAGGAACTTGAGGCTGCACT 689 Query 787 TGATTCTCTTTTCAAGTCACTTGTCCAATATAGAGTTTATTTGCTTAACATTCTTACAAC 846 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 690 TGATTCTCTTTTCAAGTCTCTTGTCCAATATAGAGTTTATTTGCTCAACATTCTTACAAC 749 Query 847 ACACTCTTAGTTTAGTTAGTCTCTAATTGTACACAAAACATAT 889 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 750 ACACTCTTAGTTTAGTTAGTCTCTAATTGTACACAAAACATAT 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35492435727 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5