BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51410.1
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485493 jgi|Araly1|485493|fgenesh2_kg.5__1485__AT3G51410.1 699 0.0
> Ahg485493 jgi|Araly1|485493|fgenesh2_kg.5__1485__AT3G51410.1
Length=792
Score = 699 bits (378), Expect = 0.0
Identities = 428/452 (95%), Gaps = 4/452 (1%)
Strand=Plus/Plus
Query 65 TTTTCTTCAGCAGAATTAAGAAACATGGCATTTCCAGAAACCAAACTCCAAATG-CCAGT 123
|||||||||||||||| ||||||||||||||| || ||||||||||| |||||| ||| |
Sbjct 1 TTTTCTTCAGCAGAATCAAGAAACATGGCATTCCCTGAAACCAAACTTCAAATGCCCA-T 59
Query 124 TAGATCTATAAGTCTTCCATCAAGAATCCACCATCCTTCTGCTAAGTTTCAAGCTGCTCT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAGATCTATAAGTCTTCCATCAAGAATCCACCATCCTTCTGCTAAGTTTCAAGCTGCTCT 119
Query 184 CTCTCAGATTCATCTCTTCCAAAACTCATCTGATTCTCAATCTCTTCACGCCTCGTTACT 243
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 120 CTCTCAGATTCATCTTTTCCAAAACTCATCTGATTCACAATCTCTTCAAGCCTCATTACT 179
Query 244 CAACCTCTCTGAGCTTTACCATTCCCTTCACCAACTCAATCACTCTCTTCCCACAGCTCA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAACCTCTCTGAGCTTTACCATTCCCTTCACCAACTCAATCACTCTCTTCCCACAGCTCA 239
Query 304 AGCTGAACATTCTCTTGACGTGTCAGCCACGTTACTAGACTCTTGCGACGCAGCGAGAAA 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 AGCTGAACATTCTCTTGACGTGTCCGCCACGTTACTAGACTCTTGCGACGCAGCGAGAAA 299
Query 364 CCTAGTTCTCACTCTCAGAGAGCATCTCCTTAATCTTCAGTCTGCA-TTGAGAAGAAAAG 422
|||| | || || ||||||||||||||||| |||||||||||||| || || ||||| |
Sbjct 300 CCTAATCCTAACACTCAGAGAGCATCTCCTCAATCTTCAGTCTGCGCTT-AGGAGAAAGG 358
Query 423 ACAAATCCATGGAAGTTCAGATCAAAGAGTACTTTTCCTTTAGGAAGAAGATCAAGAAAG 482
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 359 ATAAATCCATGGAAGTTCAGATCAAAGAGTACTTTTCCTTCAGGAAAAAGATCAAGAAAG 418
Query 483 AGACTAACAAGCTTCTTCTTGGCCTCAAGAAG 514
||||||||||||||||||||||||||||||||
Sbjct 419 AGACTAACAAGCTTCTTCTTGGCCTCAAGAAG 450
Score = 538 bits (291), Expect = 3e-152
Identities = 326/343 (95%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 548 GTCTCCATCTTCCGCTCTCTTTTCATGTTCCTGTCCACAACATCAACAATGAAGACAAAG 607
||||| ||||||||||||||||||||||||||||| |||||||| || | |||||||||
Sbjct 451 GTCTCTATCTTCCGCTCTCTTTTCATGTTCCTGTCGACAACATCGACCGTAAAGACAAAG 510
Query 608 ACATGTTCTCTCAAATTCGTCTCCAGGCTGATCAGTGGTGGTCACCGATCGTCATCGTCG 667
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 511 ACATGTTCTCTCAAATTCGTCTCCAAGCTGATCAGTGGTGGTCACCGATCGTCGTCGTCG 570
Query 668 ATAATGAGCGAGTTGCAGAACT-TGGATGCAGTTCTACGTTCAGATGGGGATAACTCCAA 726
|||||||||||||||||||| | | |||| |||||||||||||||||||||||||||||
Sbjct 571 ATAATGAGCGAGTTGCAGAA-TGTTGATGTGGTTCTACGTTCAGATGGGGATAACTCCAA 629
Query 727 GGAAATTAAGAAGATGTTAGAGAGATTAGAGGAAAGAACAGAGGAACTTGAGACTGCACT 786
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 630 GGAAATGAAGAAGATGTTAGAGAGATTAGAGGAAAGAACAGAGGAACTTGAGGCTGCACT 689
Query 787 TGATTCTCTTTTCAAGTCACTTGTCCAATATAGAGTTTATTTGCTTAACATTCTTACAAC 846
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 690 TGATTCTCTTTTCAAGTCTCTTGTCCAATATAGAGTTTATTTGCTCAACATTCTTACAAC 749
Query 847 ACACTCTTAGTTTAGTTAGTCTCTAATTGTACACAAAACATAT 889
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 ACACTCTTAGTTTAGTTAGTCTCTAATTGTACACAAAACATAT 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35492435727
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5