BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51420.1
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485494 jgi|Araly1|485494|fgenesh2_kg.5__1486__AT3G51420.1 1548 0.0
Ahg323700 jgi|Araly1|323700|fgenesh1_pm.C_scaffold_5001244 1092 0.0
Ahg485496 jgi|Araly1|485496|fgenesh2_kg.5__1488__AT3G51440.1 990 0.0
> Ahg485494 jgi|Araly1|485494|fgenesh2_kg.5__1486__AT3G51420.1
Length=1145
Score = 1548 bits (838), Expect = 0.0
Identities = 1046/1148 (91%), Gaps = 8/1148 (1%)
Strand=Plus/Plus
Query 19 tttttCTCCACAAACCCAAtctttctacaatggttctcttcttctccactcgttttctct 78
||||| ||||||||||||||||||||||||||| | | ||| ||||||||||||| ||||
Sbjct 1 TTTTT-TCCACAAACCCAATCTTTCTACAATGGCTATGTTCGTCTCCACTCGTTTGCTCT 59
Query 79 tcttctccatcttcttcccttgcctcatctctatcactctctACCAAC---TCGACTCAT 135
||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 60 TCTTCTCCATCATCATCCCTTTACTCATCTCTATCACTCTCTACCAACTGATCGACTCAT 119
Query 136 TCGAGCCAGCTTCACTTCCCGCGGACTCACTCATCACCTCTCCCACTTCAATCCCGCCAC 195
|||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 120 TCGACCCAGCTCCACTTCCCGCTGACTCACTCATCACCTCTCCTACTTCAATCCCGCCAC 179
Query 196 TTCTCAACGACAGATTTCTCACCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAACC 255
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCTCAACGACAAATTCCTCACCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAACC 239
Query 256 CCGAGGATATCGCCTACCATAAGGACTCTAATCTCATCTATACTGGTTGTGTTGATGGAT 315
|||| |||||||| ||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 240 CCGAAGATATCGCTTACCATAAGGACTCTGGCCTTATCTACACTGGTTGTGTTGATGGAT 299
Query 316 GGGTGAAACGAGTCAGTGTTCACGACTCAGCTAATGACTCAATCGTAGAGGATTGGGTCA 375
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 300 GGGTGAAACGAGTCAGTGTTCACGACTCAGCTAATGACTCAGTCGTGGAGGATTGGGTCA 359
Query 376 ATACCGGTGGTAGACCTCTCGGTATCGCTTTTGGACTTCACGGCGAAGTCATTGTCGCCG 435
||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||| |
Sbjct 360 ATACCGGCGGTAGACCTCTCGGTATCGCTTTCGGAATCCACGGCGAAGTCATTGTCGCAG 419
Query 436 ACGCAAACAAGGGATTGTTGAGTATAAGCGATGGCGGGAAGAAGACGGAATTGTTGACGG 495
|||| |||||||| |||||| |||||||| || |||||||||| ||||| |||||||||
Sbjct 420 ACGCGGACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGGCGGAACTGTTGACGG 479
Query 496 ATGAAGCAGACGGTGTTAGATTTAAGCTGACGGATGCAGTTACCGTTGCTGATAACGGCG 555
|||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 480 ATGAAGCAGAAGGCGTTAGATTGAAGCTGACGGATGCAGTTACCGTTGCAGATAACGGCG 539
Query 556 TTTTGTATTTCACAGATGCTTCTTCGAAATACGATTTCTATCAATTTATCTTTGATTTCT 615
||||||||||||| |||||||||| ||||| ||| || |||||||||||||||||||||
Sbjct 540 TTTTGTATTTCACTGATGCTTCTTATAAATATGATATCCATCAATTTATCTTTGATTTCT 599
Query 616 TGGAAGGCAAACCACACGGTCGTGTCATGAGCTTTGATCCTACCACACGTGCCACACGTG 675
|||||||||||||||| || ||| |||| ||||||||||| |||||||||| ||||||||
Sbjct 600 TGGAAGGCAAACCACATGGACGTCTCATAAGCTTTGATCCCACCACACGTGTCACACGTG 659
Query 676 TTCTTCTCAAAGACCTCTACTTCGCTAATGGCATATCAATGTCCCCTGATCAAACACATT 735
| ||||||| ||||| |||||||||||||||||||| || |||||||||||||| |||
Sbjct 660 TCCTTCTCAGCGACCTTTACTTCGCTAATGGCATATCCATATCCCCTGATCAAACCCATC 719
Query 736 TCGTCTTCTGCGAAACCATCATGAGAAGATGCAGTAAGTATTATATTAGTGAGGAGCGTG 795
|||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 720 TCGTCTTCTGCGAAACGGTCAGGAGAAGATGTAGTAAGTATTATATAAGTGAGGAGCGTG 779
Query 796 TTGAGGTATTTATTCAGGGCTTACCAGGTTATCCAGATAACATTCGGTACGACGGAGATG 855
| |||||||| ||||| ||||| || |||| ||||||||||||||| |||||||||||||
Sbjct 780 TGGAGGTATTGATTCAAGGCTTGCCGGGTTTTCCAGATAACATTCGATACGACGGAGATG 839
Query 856 GACATTACTGGATTGCATTGATTTCGGAAGTAACAACGTCATGGAAACTCTCGATGAAAT 915
|| |||||||||| || ||| ||||||||||||||||| | ||||| |||||||||||||
Sbjct 840 GATATTACTGGATCGCTTTGGTTTCGGAAGTAACAACGCCGTGGAAGCTCTCGATGAAAT 899
Query 916 ACCTTTTCTTGAGGAAACTCATATAC-ATGGCGGCTAAGTATGGCGTGGAACTACTGTCT 974
||| |||||||||||||||||||| | || ||||||||||||||||||||| || |||||
Sbjct 900 ACCCTTTCTTGAGGAAACTCATAT-CAATAGCGGCTAAGTATGGCGTGGAATTATTGTCT 958
Query 975 ATAAAGAATGCAGCCGTTTTGCAAGTGGATTTGGATGGGAATCCTATCGCAATGTACCAT 1034
|| |||||||||| |||||||||| |||||||||| |||||||| |||||| ||||||||
Sbjct 959 ATGAAGAATGCAGGCGTTTTGCAATTGGATTTGGACGGGAATCCCATCGCATTGTACCAT 1018
Query 1035 GATCATCCATTCTCTCACATAACAAGCGGAGTCAAGATTGGGAACCATCTCTATTTTGGG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 GATCATCCATTCTCTCACATAACAAGCGGAGTCAAGATTGGGAACCATCTCTATTGTGGG 1078
Query 1095 AGCCTCTTGCATTCCTACATTACTAGACTCGATCTTTT-AAAGTATCCCGCACAAAAGAA 1153
|| |||||||||||||||||||||||||||||||| || ||| ||||| |||||||||||
Sbjct 1079 AGTCTCTTGCATTCCTACATTACTAGACTCGATCTCTTGAAA-TATCCTGCACAAAAGAA 1137
Query 1154 GCTTTAAA 1161
||||||||
Sbjct 1138 GCTTTAAA 1145
> Ahg323700 jgi|Araly1|323700|fgenesh1_pm.C_scaffold_5001244
Length=1119
Score = 1092 bits (591), Expect = 0.0
Identities = 945/1114 (85%), Gaps = 32/1114 (3%)
Strand=Plus/Plus
Query 57 ttcttctccactcgttttctcttcttctccatcttc-ttcccttgcctcatctctatcac 115
|||||||| ||||||||||||||||||||| | || | ||||| ||| |||||||| |
Sbjct 10 TTCTTCTCTTCTCGTTTTCTCTTCTTCTCCACCATCGTCCCCTT-ACTCGTCTCTATCGC 68
Query 116 tctctACCAACTCGACTCATTCGAGCCAGCTTCACTTCCCGCGGACT-CACT-CATCACC 173
||||||| |||||||| | || || |||||| | |||| | || | || | | | ||
Sbjct 69 TCTCTACAAACTCGACACCTTTGACCCAGCTCCGGTTCCTTCCGA-TGCA-TACGCCTCC 126
Query 174 TCTCCCACTTCAATCCCGCCACTTCTCAACGACAGATTTCTCACCGGAGCTGAGTTTATC 233
||| ||||| |||||||| ||| ||||||||| || |||||||||||||||||||||
Sbjct 127 TCTAATACTTCCATCCCGCCGCTTGTCAACGACAAATCACTCACCGGAGCTGAGTTTATC 186
Query 234 GGCGTCGGTCTTCTCAATAACCCCGAGGATATCGCCTACCAT-AAGGACTCTAATCTCAT 292
||||||||||||||| |||| || |||||||||||||||||| ||| | |||||||||||
Sbjct 187 GGCGTCGGTCTTCTCGATAAACCTGAGGATATCGCCTACCATCAAG-AGTCTAATCTCAT 245
Query 293 CTATACTGGTTGTGTTGATGGATGGGTGAAACGAGTCAGTGTTCACGACTCAGCTAATGA 352
||||||||| || | |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 246 CTATACTGGCTGCATAGATGGATGGGTGAAACGAGTCAGTGTCCATGACTCAGCTAATGA 305
Query 353 CTCAATCGTAGAGGATTGGGTCAATACCGGTGGTAGACCTCTCGGTATCGCTTTTGGACT 412
|||| |||| |||||||||||||||||||| |||||||||||||| ||||| || ||| |
Sbjct 306 CTCAGTCGTTGAGGATTGGGTCAATACCGGCGGTAGACCTCTCGGAATCGCCTTCGGAAT 365
Query 413 TCACGGCGAAGTCATTGTCGCCGACGCAAACAAGGGATTGTTGAGTATAAGCGATGGCGG 472
|||||||||||||||||| || |||||| |||||||| |||||| ||||| | || |||
Sbjct 366 TCACGGCGAAGTCATTGTTGCAGACGCATACAAGGGACTGTTGAACATAAGTGGTGACGG 425
Query 473 GAAGAAGACGGAATTGTTGACGGATGAAGCAGACGGTGTTAGATTTAAGCTGACGGATGC 532
||||||||||||||| |||||||||||||| || || ||||||||||||||||| ||||
Sbjct 426 GAAGAAGACGGAATTATTGACGGATGAAGCGGAAGGCGTTAGATTTAAGCTGACTGATGT 485
Query 533 AGTTACCGTTGCTGATAACGGCGTTTTGTATTTCACAGATGCTTCTTCGAAATACGATTT 592
||| ||||||| ||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct 486 AGTCGCCGTTGCAGATAACGGCGTTTTGTATTTCACTGATGCTTCTTATAAATAC-ACT- 543
Query 593 CTA--TCAATTTATCTTTGAT-TTCTTGGAAGGCAAACCACACGGTCGTGTCATGAGCTT 649
||| |||| | | ||||| || |||||||| ||||||||||||||| ||||||||||
Sbjct 544 CTACATCAAGTCAAATTTGACATT-TTGGAAGGTAAACCACACGGTCGTCTCATGAGCTT 602
Query 650 TGATCCTACCAC-AC-GTGCCACACGTGTTCTTCTCAAAGACCTCTACTTCGCTAATGGC 707
|||||| ||||| | ||| ||||||||||| |||| ||| || |||||||||||||||
Sbjct 603 TGATCCCACCACTAAAGTG--ACACGTGTTCTCCTCAGAGATCTTTACTTCGCTAATGGC 660
Query 708 ATATCAATGTCCCCTGATCAAACACATTTCGTCTTCTGCGAAAC-CATCATGAGAAGATG 766
| || ||||| ||||||||||| ||| || ||||||| ||||| | ||||||||||||
Sbjct 661 GTCTCCATGTCTCCTGATCAAACCCATCTCATCTTCTGTGAAACTCC-CATGAGAAGATG 719
Query 767 CAGTAAGTATTATATTAGTGAGGAGCGTGTTGAGGTATTTATTCAGGGCTTACCAGGTTA 826
||| |||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 720 CAGCAAGTATTACATCAGTGAGGAGCGTGTAGAGGTATTCATTCAAGGCTTACCAGGTTA 779
Query 827 TCCAGATAACATTCGGTACGACGGAGATGGACATTACTGGATTGC-ATTGATTTCGGAAG 885
||||||||| |||||||||||||||||||||||||||||||| || || | |||||| ||
Sbjct 780 TCCAGATAATATTCGGTACGACGGAGATGGACATTACTGGATCGCTATGG-TTTCGGGAG 838
Query 886 TAACAACGTCATGGAAACTCTCGATGAAATACCTTTTCTTGAGGAAACTCATATACATGG 945
|||||| | |||| || ||||||||||||| ||||||||||||||||| | |||||
Sbjct 839 TAACAAATTTGTGGAGGCTATCGATGAAATACCCTTTCTTGAGGAAACTCACAGGCATGG 898
Query 946 CGGCTAAGTATGGCGTGGAACT-ACTGTCTATAAAGAATGCAGCCGTTTTGCAAGTGGAT 1004
|||||||||||||||||||||| | ||| ||| |||||||||| ||||||||| || |||
Sbjct 899 CGGCTAAGTATGGCGTGGAACTTA-TGTTTATGAAGAATGCAGGCGTTTTGCAGGTTGAT 957
Query 1005 TTGGATGGGAATCCTATCGCA-ATGTACCATGATCATCCATTCTCTCACATAACAAGCGG 1063
|||||||||||||| |||||| | ||| ||||||| | ||||||||||||| | |||
Sbjct 958 TTGGATGGGAATCCCATCGCATAC-TACTATGATCAGAGACTCTCTCACATAACCACCGG 1016
Query 1064 AGTCAAGATTGGGAACCATCTCTATTTTGGGAGCCTCTTGCATTC-CTACATTA-CTAGA 1121
||||||||||||||| ||||||||| ||| | |||||||||| | |||||| | ||
Sbjct 1017 TGTCAAGATTGGGAACTATCTCTATTGTGGAAATATCTTGCATTCAC-ACATTATCC-GA 1074
Query 1122 CTCGATCTTTT-AAAGTATCCCGCACAAAAGAAG 1154
||||||||||| ||| ||||| ||||| ||||||
Sbjct 1075 CTCGATCTTTTGAAA-TATCCTGCACAGAAGAAG 1107
> Ahg485496 jgi|Araly1|485496|fgenesh2_kg.5__1488__AT3G51440.1
Length=1119
Score = 990 bits (536), Expect = 0.0
Identities = 882/1042 (85%), Gaps = 52/1042 (5%)
Strand=Plus/Plus
Query 203 CGACAGATTTCTCACCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAACCCCGAGGA 262
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 95 CGACAAATTTCTCGCCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAACCCCGAAGA 154
Query 263 TATCGCCTACCAT-AAGGACTCTAATCTCATCTATACTGGTTGTGTTGATGGATGGGTGA 321
|||||| |||||| ||| ||||| | |||||||||||||||| ||||||||||||||||
Sbjct 155 TATCGCTTACCATGAAG-ACTCTGGTTTCATCTATACTGGTTGCGTTGATGGATGGGTGA 213
Query 322 AACGAGTCA-GTGTTCAC-GACTCAGCTAATGACTCAATCGTAGAGGATTGGGTCAATAC 379
||||||||| | || | | || || | |||||||||| |||| || ||||||||||||||
Sbjct 214 AACGAGTCAAG-GT-CGCCGAGTCGGTTAATGACTCAGTCGTTGAAGATTGGGTCAATAC 271
Query 380 CGGTGGTAGACCTCTCGGTATCGCTTTTGGACTTCACGGCGAAGTCATTGTCGCCGACGC 439
|||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 272 CGGTGGTAGACCGCTCGGAATCGCGTTTGGACTCCACGGCGAAGTCATCGTCGCTGACGC 331
Query 440 AAACAAGGGATTGTTGAGTATAAGCGATGGCGGGAAGAAGACGGAATTGTTGACGGATGA 499
|||||||| |||||| |||||||| || |||||||||||||||||| || ||||| ||
Sbjct 332 GTACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTATTAACGGAAGA 391
Query 500 AGCAGACGGTGTTAGATTTAAGCTGACGGATGCAGTTACCGTTGCTGATAACGGCGTTTT 559
||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 392 AGCGGACGGCGTTAGATTTAAGCTGACGGATGCAGTTACTGTCGCAGATAACGGCGTTTT 451
Query 560 GTATTTCACAGATGCTTCTTCGAAATACGATT-TCTATCAATTTA-TCTTTGATTTCTTG 617
||||||||| |||||||||| |||||| | | || || | |||| | |||||| |||||
Sbjct 452 GTATTTCACTGATGCTTCTTATAAATAC-AGTCTCCATGAGTTTAGT-TTTGATATCTTG 509
Query 618 GAAGGCAAACCACACGGTCGTGTCATGAGCTTTGATCCTACCACAC--GTGCCACACGTG 675
|||||||||||||| |||||| |||||||||||||||| || ||| ||| |||||||
Sbjct 510 GAAGGCAAACCACATGGTCGTCTCATGAGCTTTGATCCCACTACAAAAGTG--ACACGTG 567
Query 676 TTCTTCTCAAAGACCTCTACTTCGCTAATGGCATATCAATGTCCCCTGATCAAACACATT 735
| ||||||| ||||||||||||||||||||| | || ||||| ||||||||||| |||
Sbjct 568 TCCTTCTCAGAGACCTCTACTTCGCTAATGGTGTCTCTATGTCTCCTGATCAAACCCATC 627
Query 736 TCGTCTTCTGCGAAACCA-TCATGAGAAGATGCAGTAAGTATTATATTAGTG-AGGAGCG 793
|||||||||| |||||| | || |||||||| ||||||||||| || | || ||| |||
Sbjct 628 TCGTCTTCTGTGAAACCCCT-ATAAGAAGATGTAGTAAGTATTACATCAATGGAGG-GCG 685
Query 794 TGTTGAGGTATTTATTCAGGGCTTACCAGGTTATCCAGATAACATTCGGTACGACGGAGA 853
||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 686 TGTGGAGTTATTTATTCAAGGCTTACCAGGCTATCCAGATAACATTCGGTACGATGGAGA 745
Query 854 TGGACATTACTGGATTGCATTGATTTCGGAAGTAACAACGTCATGGAAACTCTCGATGAA 913
||||||||||||||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct 746 TGGACATTACTGGATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCTTTCGATGAA 805
Query 914 ATACCTTTTCTTGAGGAAACTCATATAC-ATGGCGGCTAAGTATGGCG-TGGAAC-TACT 970
||||| ||||||||||||| ||| | | |||||||||||||| ||| || ||| || |
Sbjct 806 ATACCCTTTCTTGAGGAAAATCACAG-CTATGGCGGCTAAGTACGGCTATG-AACCTA-T 862
Query 971 GTCTATAAAGAATGCAGCCGTTTTGCAAGTGGATTTGGATGGGAATCCTATCGCA-ATGT 1029
|| ||| ||||||||| |||||||||||||||||||||||||| || |||||| | |
Sbjct 863 GTTTATGGAGAATGCAGGAGTTTTGCAAGTGGATTTGGATGGGAACCCCATCGCATAC-T 921
Query 1030 ACCATGATCATCCATTCTCTCACATAACAAGCGGAGTCAAGATTGGGAACCATCTCTATT 1089
|||||||||| || ||||||||||||| | ||| ||||||||||||||| |||||||||
Sbjct 922 ACCATGATCAGGCACTCTCTCACATAACCACCGGTGTCAAGATTGGGAACTATCTCTATT 981
Query 1090 TTGGGAGCCTCTTGCATTC-CTACATTA-CTAGACTCGATCTTTT-AAAGTATCCC-GCA 1145
||| || ||||||||||| | |||||| | |||| ||||| | ||| || ||| |||
Sbjct 982 GTGGAAGTCTCTTGCATTCAC-ACATTATCC-GACTTGATCTCATGAAA-TA-CCCTGCA 1037
Query 1146 ---C--AA-AAGAAGCTTT-AAACATCAAGTTT----A------GG-AGTATTCACTGTC 1187
| || |||||||||| ||||||||||||| | || |||||||| ||||
Sbjct 1038 GTACTGAACAAGAAGCTTTGAAACATCAAGTTTGTTTACATTTTGGGAGTATTCATTGTC 1097
Query 1188 ACAAAATGTAAAGTCTTCGTCC 1209
|||||||||||| || ||||||
Sbjct 1098 ACAAAATGTAAACTCATCGTCC 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58697067545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5