BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51430.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323700 jgi|Araly1|323700|fgenesh1_pm.C_scaffold_5001244 1635 0.0
Ahg485494 jgi|Araly1|485494|fgenesh2_kg.5__1486__AT3G51420.1 1153 0.0
Ahg485496 jgi|Araly1|485496|fgenesh2_kg.5__1488__AT3G51440.1 1125 0.0
> Ahg323700 jgi|Araly1|323700|fgenesh1_pm.C_scaffold_5001244
Length=1119
Score = 1635 bits (885), Expect = 0.0
Identities = 1038/1113 (93%), Gaps = 6/1113 (1%)
Strand=Plus/Plus
Query 84 ATGCCTATGTTCTACTCCTCTCGTTTTCTCTTCTTCTTCACCATCGTCCCCTTACTCGTC 143
|||||| | |||| ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGCCTGTATTCTTCTCTTCTCGTTTTCTCTTCTTCTCCACCATCGTCCCCTTACTCGTC 60
Query 144 TCTATCGCTCTCTACCAACTCGACACATTTGACCCAGCTCCGGTTCCTTCCGAGGCATAC 203
||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 TCTATCGCTCTCTACAAACTCGACACCTTTGACCCAGCTCCGGTTCCTTCCGATGCATAC 120
Query 204 GCCTCCTCTACTACTTCAATCCCGCCGCTTATCAGCGACAAAT-ATCTCACCGGAGCTGA 262
|||||||||| |||||| |||||||||||| ||| |||||||| | ||||||||||||||
Sbjct 121 GCCTCCTCTAATACTTCCATCCCGCCGCTTGTCAACGACAAATCA-CTCACCGGAGCTGA 179
Query 263 GTTTATTGGCGTCGGTCTTCTCGATAAACCCGAAGATATCGCCTATCATCAAGACTCTAA 322
|||||| ||||||||||||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 180 GTTTATCGGCGTCGGTCTTCTCGATAAACCTGAGGATATCGCCTACCATCAAGAGTCTAA 239
Query 323 TCTCATATATACTGGCTGCATAGATGGATGGGTGAAACGAGTCAGTGTCCACGACTCAGC 382
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TCTCATCTATACTGGCTGCATAGATGGATGGGTGAAACGAGTCAGTGTCCATGACTCAGC 299
Query 383 TAATGACTCAGTCGTTGAGGATTGGGTCAATACCGGTGGTAGACCGCTCGGAATCGCTTT 442
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 300 TAATGACTCAGTCGTTGAGGATTGGGTCAATACCGGCGGTAGACCTCTCGGAATCGCCTT 359
Query 443 CGGAGTCCACGGCGAAGTCATTGTGGCAGACGCATACAAGGGACTGTTGAACATAAGTGG 502
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CGGAATTCACGGCGAAGTCATTGTTGCAGACGCATACAAGGGACTGTTGAACATAAGTGG 419
Query 503 TGACGGGAAGAAGACGGAATTATTGACGGATCAAGCGGAAGGCGTTAAATTTAAGCTGAC 562
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 420 TGACGGGAAGAAGACGGAATTATTGACGGATGAAGCGGAAGGCGTTAGATTTAAGCTGAC 479
Query 563 TGATGTAGTCGCCGTTGCAGATAACGGCGTTTTGTATTTCACTGATGCTTCTTACAAGTA 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 480 TGATGTAGTCGCCGTTGCAGATAACGGCGTTTTGTATTTCACTGATGCTTCTTATAAATA 539
Query 623 CACTCTGCATCAAGTCAAGTTTGACATTTTGGAAGGTAAACCACATGGCCGTCTCATGAG 682
|||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 540 CACTCTACATCAAGTCAAATTTGACATTTTGGAAGGTAAACCACACGGTCGTCTCATGAG 599
Query 683 CTTTGATCCCACCAC-AC-GTGTTACACGTGTACTTCTCAAAGACCTTTACTTCGCTAAT 740
||||||||||||||| | ||| |||||||| || |||| ||| |||||||||||||||
Sbjct 600 CTTTGATCCCACCACTAAAGTG--ACACGTGTTCTCCTCAGAGATCTTTACTTCGCTAAT 657
Query 741 GGCGTCTCCATGTCTCCTGATCAAACGCATCTCATCTTCTGTGAAACTCCCATGAGACGA 800
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 658 GGCGTCTCCATGTCTCCTGATCAAACCCATCTCATCTTCTGTGAAACTCCCATGAGAAGA 717
Query 801 TGCAGCAAGTATTACATTAATGAAGAGCGTGTAGAGGTGTTTATTCAAGGCTTACCAGGT 860
||||||||||||||||| | ||| |||||||||||||| || ||||||||||||||||||
Sbjct 718 TGCAGCAAGTATTACATCAGTGAGGAGCGTGTAGAGGTATTCATTCAAGGCTTACCAGGT 777
Query 861 TATCCAGATAACATTCGGTACGACGGAGATGGCCATTACTGGATTGCTATGGTTTCGGGA 920
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 778 TATCCAGATAATATTCGGTACGACGGAGATGGACATTACTGGATCGCTATGGTTTCGGGA 837
Query 921 GCATCAACGTTGTGGAGGCTCTCGATGAAATACCCTTTCTTGAGGAAAATCACAGCCATA 980
| | ||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||
Sbjct 838 GTAACAAATTTGTGGAGGCTATCGATGAAATACCCTTTCTTGAGGAAACTCACAGGCATG 897
Query 981 GCGGCTAAGTATGGCGTGGAACTTATGTTCATGAAGAATGCAGGTGTTCTGCAGGTGGAT 1040
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||
Sbjct 898 GCGGCTAAGTATGGCGTGGAACTTATGTTTATGAAGAATGCAGGCGTTTTGCAGGTTGAT 957
Query 1041 TTGGATGGGAATCCCATCGCTTACTACCATGATCAGAGACTCTCTCACATTACCACCGGT 1100
|||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct 958 TTGGATGGGAATCCCATCGCATACTACTATGATCAGAGACTCTCTCACATAACCACCGGT 1017
Query 1101 ATCAAGATTGGGAACTATCTCTATTGTGGAAATATCTTGCATTCGTACATTATCCGACTC 1160
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1018 GTCAAGATTGGGAACTATCTCTATTGTGGAAATATCTTGCATTCACACATTATCCGACTC 1077
Query 1161 GATCTCCTGAAGTATCCTGCACAGAAGAAGAAG 1193
||||| |||| |||||||||||||||||||||
Sbjct 1078 GATCTTTTGAAATATCCTGCACAGAAGAAGAAG 1110
> Ahg485494 jgi|Araly1|485494|fgenesh2_kg.5__1486__AT3G51420.1
Length=1145
Score = 1153 bits (624), Expect = 0.0
Identities = 982/1153 (85%), Gaps = 31/1153 (3%)
Strand=Plus/Plus
Query 53 TTTTTCCACAAAGCCAATTCTCTTGTATCCAATGCCTATGTTC-TACTCCTCTCGTTTTC 111
|||||||||||| |||| ||| || || ||||| |||||||| | |||| ||||||| |
Sbjct 2 TTTTTCCACAAACCCAA-TCT-TTCTA--CAATGGCTATGTTCGT-CTCCACTCGTTTGC 56
Query 112 TCTTCTTCTTCACCATCGTCCCCTTACTCGTCTCTATCGCTCTCTACCAAC---TCGACA 168
||||||||| || |||| |||| |||||| |||||||| |||||||||||| |||||
Sbjct 57 TCTTCTTCTCCATCATCATCCCTTTACTCATCTCTATCACTCTCTACCAACTGATCGACT 116
Query 169 CATTTGACCCAGCTCCGGTTCCTTCCGAGGCA-TACGCCTCCTCTACTACTTCAATCCCG 227
|||| ||||||||||| |||| | || || | | | ||||| ||||||||||||||
Sbjct 117 CATTCGACCCAGCTCCACTTCCCGCTGACTCACT-CATCACCTCTCCTACTTCAATCCCG 175
Query 228 CCGCTTATCAGCGACAAATAT-CTCACCGGAGCTGAGTTTATTGGCGTCGGTCTTCTCGA 286
|| ||| ||| |||||||| | |||||||||||||||||||| ||||||||||||||| |
Sbjct 176 CCACTTCTCAACGACAAAT-TCCTCACCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAA 234
Query 287 TAAACCCGAAGATATCGCCTATCATCAA-GACTCTAATCTCATATATACTGGCTGCATAG 345
||| |||||||||||||| || ||| || |||||| || || || ||||| || | |
Sbjct 235 TAACCCCGAAGATATCGCTTACCAT-AAGGACTCTGGCCTTATCTACACTGGTTGTGTTG 293
Query 346 ATGGATGGGTGAAACGAGTCAGTGTCCACGACTCAGCTAATGACTCAGTCGTTGAGGATT 405
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 294 ATGGATGGGTGAAACGAGTCAGTGTTCACGACTCAGCTAATGACTCAGTCGTGGAGGATT 353
Query 406 GGGTCAATACCGGTGGTAGACCGCTCGGAATCGCTTTCGGAGTCCACGGCGAAGTCATTG 465
||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 354 GGGTCAATACCGGCGGTAGACCTCTCGGTATCGCTTTCGGAATCCACGGCGAAGTCATTG 413
Query 466 TGGCAGACGCATACAAGGGACTGTTGAACATAAGTGGTGACGGGAAGAAGACGGAATTAT 525
| |||||||| |||||||||||||||| ||||| ||||||||||||||| ||||| | |
Sbjct 414 TCGCAGACGCGGACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGGCGGAACTGT 473
Query 526 TGACGGATCAAGCGGAAGGCGTTAAATTTAAGCTGACTGATGTAGTCGCCGTTGCAGATA 585
|||||||| |||| |||||||||| ||| |||||||| |||| ||| ||||||||||||
Sbjct 474 TGACGGATGAAGCAGAAGGCGTTAGATTGAAGCTGACGGATGCAGTTACCGTTGCAGATA 533
Query 586 ACGGCGTTTTGTATTTCACTGATGCTTCTTACAAGTAC-ACTCTGCATCAAGTCAAGTTT 644
||||||||||||||||||||||||||||||| || || | | | |||||| | | |||
Sbjct 534 ACGGCGTTTTGTATTTCACTGATGCTTCTTATAAATATGA-TATCCATCAATTTATCTTT 592
Query 645 GACATT-TTGGAAGGTAAACCACATGGCCGTCTCATGAGCTTTGATCCCACCACACGTGT 703
|| || |||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 593 GAT-TTCTTGGAAGGCAAACCACATGGACGTCTCATAAGCTTTGATCCCACCACACGTGT 651
Query 704 TACACGTGTACTTCTCAAAGACCTTTACTTCGCTAATGGCGTCTCCATGTCTCCTGATCA 763
|||||||| ||||||| ||||||||||||||||||||| | ||||| || ||||||||
Sbjct 652 CACACGTGTCCTTCTCAGCGACCTTTACTTCGCTAATGGCATATCCATATCCCCTGATCA 711
Query 764 AACGCATCTCATCTTCTGTGAAACTCCCATGAGACGATGCAGCAAGTATTACATTAA-TG 822
||| |||||| ||||||| ||||| || |||| |||| || |||||||| || || ||
Sbjct 712 AACCCATCTCGTCTTCTGCGAAACGGTCAGGAGAAGATGTAGTAAGTATTATAT-AAGTG 770
Query 823 AAGAGCGTGTAGAGGTGTTTATTCAAGGCTTACCAGGTTATCCAGATAACATTCGGTACG 882
| |||||||| ||||| || ||||||||||| || |||| ||||||||||||||| ||||
Sbjct 771 AGGAGCGTGTGGAGGTATTGATTCAAGGCTTGCCGGGTTTTCCAGATAACATTCGATACG 830
Query 883 ACGGAGATGGCCATTACTGGATTGCTATGGTTTCGGGAGCATCAACGTTGTGGAGGCTCT 942
|||||||||| |||||||||| ||| ||||||||| || | ||||| ||||| |||||
Sbjct 831 ACGGAGATGGATATTACTGGATCGCTTTGGTTTCGGAAGTAACAACGCCGTGGAAGCTCT 890
Query 943 CGATGAAATACCCTTTCTTGAGGAAAATCACAGCCATAGCGGCTAAGTATGGCGTGGAAC 1002
|||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||
Sbjct 891 CGATGAAATACCCTTTCTTGAGGAAACTCATATCAATAGCGGCTAAGTATGGCGTGGAA- 949
Query 1003 TTAT-GT-TCATGAAGAATGCAGGTGTTCTGCAGGTGGATTTGGATGGGAATCCCATCGC 1060
|||| || | |||||||||||||| ||| |||| |||||||||| ||||||||||||||
Sbjct 950 TTATTGTCT-ATGAAGAATGCAGGCGTTTTGCAATTGGATTTGGACGGGAATCCCATCGC 1008
Query 1061 -TTACTACCATGATCAGAGACTCTCTCACATTACCACCGGTA-TCAAGATTGGGAACTAT 1118
|| ||||||||||| | |||||||||| || | ||| | |||||||||||||| ||
Sbjct 1009 ATTG-TACCATGATCATCCATTCTCTCACATAACAAGCGG-AGTCAAGATTGGGAACCAT 1066
Query 1119 CTCTATTGTGGAAATATCTTGCATTCGTACATTA-TCCGACTCGATCTCCTGAAGTATCC 1177
||||||||||| | | |||||||||| ||||||| | ||||||||||| |||| |||||
Sbjct 1067 CTCTATTGTGGGAGTCTCTTGCATTCCTACATTACTA-GACTCGATCTCTTGAAATATCC 1125
Query 1178 TGCACAGAAGAAG 1190
|||||| ||||||
Sbjct 1126 TGCACAAAAGAAG 1138
> Ahg485496 jgi|Araly1|485496|fgenesh2_kg.5__1488__AT3G51440.1
Length=1119
Score = 1125 bits (609), Expect = 0.0
Identities = 862/984 (88%), Gaps = 18/984 (2%)
Strand=Plus/Plus
Query 239 CGACAAATATCTCACCGGAGCTGAGTTTATTGGCGTCGGTCTTCTCGATAAACCCGAAGA 298
|||||||| |||| |||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 95 CGACAAATTTCTCGCCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAACCCCGAAGA 154
Query 299 TATCGCCTATCATCAAGACTCTAATCTCATATATACTGGCTGCATAGATGGATGGGTGAA 358
|||||| || ||| |||||||| | |||| |||||||| ||| | ||||||||||||||
Sbjct 155 TATCGCTTACCATGAAGACTCTGGTTTCATCTATACTGGTTGCGTTGATGGATGGGTGAA 214
Query 359 ACGAGTC-AGTGTC-CACGACTCAGCTAATGACTCAGTCGTTGAGGATTGGGTCAATACC 416
||||||| || ||| | ||| || | |||||||||||||||||| |||||||||||||||
Sbjct 215 ACGAGTCAAG-GTCGC-CGAGTCGGTTAATGACTCAGTCGTTGAAGATTGGGTCAATACC 272
Query 417 GGTGGTAGACCGCTCGGAATCGC-TTTCGGAGTCCACGGCGAAGTCATTGTGGCAGACGC 475
||||||||||||||||||||||| ||| ||| |||||||||||||||| || || |||||
Sbjct 273 GGTGGTAGACCGCTCGGAATCGCGTTT-GGACTCCACGGCGAAGTCATCGTCGCTGACGC 331
Query 476 ATACAAGGGACTGTTGAACATAAGTGGTGACGGGAAGAAGACGGAATTATTGACGGATCA 535
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
Sbjct 332 GTACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTATTAACGGAAGA 391
Query 536 AGCGGAAGGCGTTAAATTTAAGCTGACTGATGTAGTCGCCGTTGCAGATAACGGCGTTTT 595
|||||| ||||||| |||||||||||| |||| ||| | || |||||||||||||||||
Sbjct 392 AGCGGACGGCGTTAGATTTAAGCTGACGGATGCAGTTACTGTCGCAGATAACGGCGTTTT 451
Query 596 GTATTTCACTGATGCTTCTTACAAGTACACTCTGCATCAAGTCAAGTTT-GACATTTTGG 654
||||||||||||||||||||| || |||| ||| ||| | || ||||| || || ||||
Sbjct 452 GTATTTCACTGATGCTTCTTATAAATACAGTCTCCATGA-GTTTAGTTTTGATATCTTGG 510
Query 655 AAGGTAAACCACATGGCCGTCTCATGAGCTTTGATCCCACCACACGTGTTACACGTGTAC 714
|||| ||||||||||| ||||||||||||||||||||||| ||| || |||||||| |
Sbjct 511 AAGGCAAACCACATGGTCGTCTCATGAGCTTTGATCCCACTACAAAAGTGACACGTGTCC 570
Query 715 TTCTCAAAGACCTTTACTTCGCTAATGGCGTCTCCATGTCTCCTGATCAAACGCATCTCA 774
|||||| |||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 571 TTCTCAGAGACCTCTACTTCGCTAATGGTGTCTCTATGTCTCCTGATCAAACCCATCTCG 630
Query 775 TCTTCTGTGAAACTCCC-ATGAGACGATGCAGCAAGTATTACATTAATGAAGAGCGTGTA 833
||||||||||||| ||| || ||| |||| || ||||||||||| |||| || ||||||
Sbjct 631 TCTTCTGTGAAAC-CCCTATAAGAAGATGTAGTAAGTATTACATCAATGGAGGGCGTGTG 689
Query 834 GAGGTGTTTATTCAAGGCTTACCAGGTTATCCAGATAACATTCGGTACGACGGAGATGGC 893
||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 690 GAGTTATTTATTCAAGGCTTACCAGGCTATCCAGATAACATTCGGTACGATGGAGATGGA 749
Query 894 CATTACTGGATTGCTATGGTTTCGGGAGCATCAACGTTGTGGAGGCTCTCGATGAAATAC 953
|||||||||||||| ||| |||||||| | |||||||||||| ||| ||||||||||||
Sbjct 750 CATTACTGGATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCTTTCGATGAAATAC 809
Query 954 CCTTTCTTGAGGAAAATCACAGCCATAGCGGCTAAGTATGGCG-TGGAACTTATGTTCAT 1012
||||||||||||||||||||||| || ||||||||||| ||| || ||| |||||| ||
Sbjct 810 CCTTTCTTGAGGAAAATCACAGCTATGGCGGCTAAGTACGGCTATG-AACCTATGTTTAT 868
Query 1013 GAAGAATGCAGGTGTTCTGCAGGTGGATTTGGATGGGAATCCCATCGCTTACTACCATGA 1072
| |||||||||| ||| |||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 869 GGAGAATGCAGGAGTTTTGCAAGTGGATTTGGATGGGAACCCCATCGCATACTACCATGA 928
Query 1073 TCAGAG-ACTCTCTCACATTACCACCGGTATCAAGATTGGGAACTATCTCTATTGTGGAA 1131
|||| | |||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 929 TCAG-GCACTCTCTCACATAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAA 987
Query 1132 ATATCTTGCATTCGTACATTATCCGACTCGATCTCCTGAAGTATCCTGCAC-A--GAAGA 1188
| |||||||||| ||||||||||||| |||||| |||| || |||||| | ||| |
Sbjct 988 GTCTCTTGCATTCACACATTATCCGACTTGATCTCATGAAATACCCTGCAGTACTGAACA 1047
Query 1189 AGAAGCTTTGAAACATCAAAGTTT 1212
||||||||||||||||||| ||||
Sbjct 1048 AGAAGCTTTGAAACATCAA-GTTT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5