BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51440.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485496 jgi|Araly1|485496|fgenesh2_kg.5__1488__AT3G51440.1 1528 0.0
Ahg323700 jgi|Araly1|323700|fgenesh1_pm.C_scaffold_5001244 1188 0.0
Ahg485494 jgi|Araly1|485494|fgenesh2_kg.5__1486__AT3G51420.1 1129 0.0
> Ahg485496 jgi|Araly1|485496|fgenesh2_kg.5__1488__AT3G51440.1
Length=1119
Score = 1528 bits (827), Expect = 0.0
Identities = 970/1036 (94%), Gaps = 22/1036 (2%)
Strand=Plus/Plus
Query 195 ATTTCTCACCGGAGCTGAGTTTATCGGAGTCGGTCTTCTCAATAGCCCCGAAGACATCGC 254
||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 101 ATTTCTCGCCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAACCCCGAAGATATCGC 160
Query 255 CTACCATGAAGACTCTGGTTTCATCTACACTGGTTGCGTTGATGGATGGGTCAAACGAGT 314
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 161 TTACCATGAAGACTCTGGTTTCATCTATACTGGTTGCGTTGATGGATGGGTGAAACGAGT 220
Query 315 CAAGGTCGCCGAGTCGGTTAATGACTCACTCGTTGAAGATTTGGTCAACACCGGTGGTAG 374
|||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct 221 CAAGGTCGCCGAGTCGGTTAATGACTCAGTCGTTGAAGATTGGGTCAATACCGGTGGTAG 280
Query 375 ACCGCTCGGAATCGC-TTTCGGAATCCACGGCGAAGTCATCGTCGCTGACGCTTACAAGG 433
||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 281 ACCGCTCGGAATCGCGTTT-GGACTCCACGGCGAAGTCATCGTCGCTGACGCGTACAAGG 339
Query 434 GACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTGTTAACGGAAGAAGCGGACG 493
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 340 GACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTATTAACGGAAGAAGCGGACG 399
Query 494 GCGTTAGATTTAAGCT-ACCGGATGCAGTTACTGTTGCAGATAACGGCGTTTTGTATTTC 552
|||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 400 GCGTTAGATTTAAGCTGA-CGGATGCAGTTACTGTCGCAGATAACGGCGTTTTGTATTTC 458
Query 553 ACTGATGGTTCTTATAAGTACAATCTCCATCAGTTTAGTTTTGATATCTTGGAAGGCAAA 612
||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 459 ACTGATGCTTCTTATAAATACAGTCTCCATGAGTTTAGTTTTGATATCTTGGAAGGCAAA 518
Query 613 CCACACGGTCGTCTCATGAGCTTTGATCCCACCACAAAAGTGACACGTGTACTTCTCAGA 672
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 519 CCACATGGTCGTCTCATGAGCTTTGATCCCACTACAAAAGTGACACGTGTCCTTCTCAGA 578
Query 673 GATCTCTACTTTGCTAATGGTGTCTCTCTGTCTCCTGATCAAACCCATCTCGTCTTCTGC 732
|| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 579 GACCTCTACTTCGCTAATGGTGTCTCTATGTCTCCTGATCAAACCCATCTCGTCTTCTGT 638
Query 733 GAAACCCCCATAAGAAGATGTAGTAAGTATTACATCAATGGAGGGCGCGTGGAGTTATTT 792
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 639 GAAACCCCTATAAGAAGATGTAGTAAGTATTACATCAATGGAGGGCGTGTGGAGTTATTT 698
Query 793 ATTCAAGGCTTACCAGGCTATCCAGATAACATCCGGTATGATGGAGATGGACATTACTGG 852
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 699 ATTCAAGGCTTACCAGGCTATCCAGATAACATTCGGTACGATGGAGATGGACATTACTGG 758
Query 853 ATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCTTTCAATGAAATACCCATTCTTG 912
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 759 ATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCTTTCGATGAAATACCCTTTCTTG 818
Query 913 AGGAAAATCACAGCTATGGCGGCTAAGTACGGCTATGAACCTATGTTTATGGAGAATGCA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AGGAAAATCACAGCTATGGCGGCTAAGTACGGCTATGAACCTATGTTTATGGAGAATGCA 878
Query 973 GGAGTTTTGCAGGTGGATTTGGATGGGAACCCCATCGCATACTACCATGATCAGGCGCTC 1032
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 879 GGAGTTTTGCAAGTGGATTTGGATGGGAACCCCATCGCATACTACCATGATCAGGCACTC 938
Query 1033 TCTCACATAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAGTCTCTGGCAT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 939 TCTCACATAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAGTCTCTTGCAT 998
Query 1093 TCACACATTCTCCGACTTGATCTCCTAAAATACCCTGCACAA---AACAAGAAGCTTTGA 1149
||||||||| |||||||||||||| | |||||||||||| | |||||||||||||||
Sbjct 999 TCACACATTATCCGACTTGATCTCATGAAATACCCTGCAGTACTGAACAAGAAGCTTTGA 1058
Query 1150 AACTTCATGTTTATaaaaaaaaaaGACTTTTACATTTTAGGAGTATTCACTGTCACAAAA 1209
||| ||| |||| | ||| ||||||| |||||||||| ||||||||||
Sbjct 1059 AACATCAAGTTT------------G--TTT-ACATTTTGGGAGTATTCATTGTCACAAAA 1103
Query 1210 TGTAAACTCATTGTCC 1225
||||||||||| ||||
Sbjct 1104 TGTAAACTCATCGTCC 1119
> Ahg323700 jgi|Araly1|323700|fgenesh1_pm.C_scaffold_5001244
Length=1119
Score = 1188 bits (643), Expect = 0.0
Identities = 975/1133 (86%), Gaps = 31/1133 (3%)
Strand=Plus/Plus
Query 34 ATGCCTGTATTCCTCTCTTCTCGTTTTCTCTTCTTCTGCATCATCGTCCCCTTACTCATC 93
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 1 ATGCCTGTATTCTTCTCTTCTCGTTTTCTCTTCTTCTCCACCATCGTCCCCTTACTCGTC 60
Query 94 TCTATCACTCTCTACCAACTCGACACGTTTGACCCAGCT-C--ATCATCCCGCTGAC-TC 149
|||||| |||||||| |||||||||| |||||||||||| | || | ||| || | |
Sbjct 61 TCTATCGCTCTCTACAAACTCGACACCTTTGACCCAGCTCCGGTTCCTTCCGATG-CAT- 118
Query 150 ACTCATCTCCTCTACTGCTTCAATCCCGCCTCTAATAAACGA-AAGATTTCTCACCGGAG 208
|| | |||||||| | |||| |||||||| || | ||||| || || ||||||||||
Sbjct 119 ACGC--CTCCTCTAATACTTCCATCCCGCCGCTTGTCAACGACAA-ATCACTCACCGGAG 175
Query 209 CTGAGTTTATCGGAGTCGGTCTTCTCAATAGCCCCGAAGACATCGCCTACCATGAAGACT 268
||||||||||||| |||||||||||| ||| || || || |||||||||||| |||| |
Sbjct 176 CTGAGTTTATCGGCGTCGGTCTTCTCGATAAACCTGAGGATATCGCCTACCATCAAGAGT 235
Query 269 CTGGTTTCATCTACACTGGTTGCGTTGATGGATGGGTCAAACGAGTCAAG-GTCGC-CGA 326
|| | ||||||| ||||| ||| | ||||||||||| ||||||||| || ||| | ||
Sbjct 236 CTAATCTCATCTATACTGGCTGCATAGATGGATGGGTGAAACGAGTC-AGTGTC-CATGA 293
Query 327 GTCGGTTAATGACTCACTCGTTGAAGATTTGGTCAACACCGGTGGTAGACCGCTCGGAAT 386
|| | |||||||||| ||||||| |||| |||||| ||||| |||||||| ||||||||
Sbjct 294 CTCAGCTAATGACTCAGTCGTTGAGGATTGGGTCAATACCGGCGGTAGACCTCTCGGAAT 353
Query 387 CGCTTTCGGAATCCACGGCGAAGTCATCGTCGCTGACGCTTACAAGGGACTGTTGAATAT 446
||| |||||||| |||||||||||||| || || ||||| ||||||||||||||||| ||
Sbjct 354 CGCCTTCGGAATTCACGGCGAAGTCATTGTTGCAGACGCATACAAGGGACTGTTGAACAT 413
Query 447 AAGCGGTGACGGGAAGAAGACGGAATTGTTAACGGAAGAAGCGGACGGCGTTAGATTTAA 506
||| ||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct 414 AAGTGGTGACGGGAAGAAGACGGAATTATTGACGGATGAAGCGGAAGGCGTTAGATTTAA 473
Query 507 GCT-ACCGGATGCAGTTACTGTTGCAGATAACGGCGTTTTGTATTTCACTGATGGTTCTT 565
||| | | |||| ||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 474 GCTGA-CTGATGTAGTCGCCGTTGCAGATAACGGCGTTTTGTATTTCACTGATGCTTCTT 532
Query 566 ATAAGTACAATCTCCATC-AGTTTAGTTTTGATATCTTGGAAGGCAAACCACACGGTCGT 624
|||| |||| ||| |||| || | | ||||| || |||||||| |||||||||||||||
Sbjct 533 ATAAATACACTCTACATCAAG-TCAAATTTGACATTTTGGAAGGTAAACCACACGGTCGT 591
Query 625 CTCATGAGCTTTGATCCCACCACAAAAGTGACACGTGTACTTCTCAGAGATCTCTACTTT 684
||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||
Sbjct 592 CTCATGAGCTTTGATCCCACCACTAAAGTGACACGTGTTCTCCTCAGAGATCTTTACTTC 651
Query 685 GCTAATGGTGTCTCTC-TGTCTCCTGATCAAACCCATCTCGTCTTCTGCGAAACCCCCAT 743
|||||||| ||||| | ||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 652 GCTAATGGCGTCTC-CATGTCTCCTGATCAAACCCATCTCATCTTCTGTGAAACTCCCAT 710
Query 744 AAGAAGATGTAGTAAGTATTACATCAATGGAGG-GCGCGTGGAGTTATTTATTCAAGGCT 802
|||||||| || ||||||||||||| | |||| ||| || ||| |||| ||||||||||
Sbjct 711 GAGAAGATGCAGCAAGTATTACATCAGT-GAGGAGCGTGTAGAGGTATTCATTCAAGGCT 769
Query 803 TACCAGGCTATCCAGATAACATCCGGTATGATGGAGATGGACATTACTGGATTGCAATGC 862
||||||| ||||||||||| || ||||| || |||||||||||||||||||| || |||
Sbjct 770 TACCAGGTTATCCAGATAATATTCGGTACGACGGAGATGGACATTACTGGATCGCTATGG 829
Query 863 CTTCGGGAGTAACAACGTTGTGGAAGCTTTCAATGAAATACCCATTCTTGAGGAAAATCA 922
|||||||||||||| ||||||| ||| || ||||||||||| |||||||||||| |||
Sbjct 830 TTTCGGGAGTAACAAATTTGTGGAGGCTATCGATGAAATACCCTTTCTTGAGGAAACTCA 889
Query 923 CA-GCTATGGCGGCTAAGTACGGCTAT-GAACCTATGTTTATGGAGAATGCAGGAGTTTT 980
|| || |||||||||||||| ||| | |||| |||||||||| |||||||||| |||||
Sbjct 890 CAGGC-ATGGCGGCTAAGTATGGC-GTGGAACTTATGTTTATGAAGAATGCAGGCGTTTT 947
Query 981 GCAGGTGGATTTGGATGGGAACCCCATCGCATACTACCATGATCAGGCG-CTCTCTCACA 1039
|||||| |||||||||||||| ||||||||||||||| ||||||| | | ||||||||||
Sbjct 948 GCAGGTTGATTTGGATGGGAATCCCATCGCATACTACTATGATCA-GAGACTCTCTCACA 1006
Query 1040 TAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAGTCTCTGGCATTCACACA 1099
|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1007 TAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAATATCTTGCATTCACACA 1066
Query 1100 TTCTCCGACTTGATCTCCTAAAATACCCTGCACA-AA-AC-AAGAAGCTTTGA 1149
|| ||||||| ||||| | ||||| |||||||| || | ||||||||||||
Sbjct 1067 TTATCCGACTCGATCTTTTGAAATATCCTGCACAGAAGAAGAAGAAGCTTTGA 1119
> Ahg485494 jgi|Araly1|485494|fgenesh2_kg.5__1486__AT3G51420.1
Length=1145
Score = 1129 bits (611), Expect = 0.0
Identities = 979/1154 (85%), Gaps = 35/1154 (3%)
Strand=Plus/Plus
Query 6 ttttttCCACAGAA-CCAATCCTTCTACAATGCCTGTATTCCTCTCTTCTCGTTTTCTCT 64
||||||||||| || |||||| |||||||||| || | ||| |||| ||||||| ||||
Sbjct 1 TTTTTTCCACA-AACCCAATCTTTCTACAATGGCTATGTTCGTCTCCACTCGTTTGCTCT 59
Query 65 TCTTCTGCATCATCGTCCCCTTACTCATCTCTATCACTCTCTACCAAC---TCGACACGT 121
|||||| ||||||| |||| |||||||||||||||||||||||||||| ||||| | |
Sbjct 60 TCTTCTCCATCATCATCCCTTTACTCATCTCTATCACTCTCTACCAACTGATCGACTCAT 119
Query 122 TTGACCCAGCT-CATCATCCCGCTGACTCACTCATCTCCTCTACTGCTTCAATCCCGCCT 180
| ||||||||| || | ||||||||||||||||||| ||||| || |||||||||||||
Sbjct 120 TCGACCCAGCTCCA-CTTCCCGCTGACTCACTCATCACCTCTCCTACTTCAATCCCGCCA 178
Query 181 CTAATAAACGA-AAGATTTCTCACCGGAGCTGAGTTTATCGGAGTCGGTCTTCTCAATAG 239
|| | ||||| || ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 CTTCTCAACGACAA-ATTCCTCACCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAA 237
Query 240 CCCCGAAGACATCGCCTACCATGAA-GACTCTGG-TTTCATCTACACTGGTTGCGTTGAT 297
||||||||| ||||| |||||| || |||||||| || |||||||||||||| ||||||
Sbjct 238 CCCCGAAGATATCGCTTACCAT-AAGGACTCTGGCCTT-ATCTACACTGGTTGTGTTGAT 295
Query 298 GGATGGGTCAAACGAGTCAAG-G-TCGCCGAGTCGGTTAATGACTCACTCGTTGAAGATT 355
|||||||| ||||||||| || | || ||| || | |||||||||| |||| || ||||
Sbjct 296 GGATGGGTGAAACGAGTC-AGTGTTC-ACGACTCAGCTAATGACTCAGTCGTGGAGGATT 353
Query 356 TGGTCAACACCGGTGGTAGACCGCTCGGAATCGCTTTCGGAATCCACGGCGAAGTCATCG 415
|||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 354 GGGTCAATACCGGCGGTAGACCTCTCGGTATCGCTTTCGGAATCCACGGCGAAGTCATTG 413
Query 416 TCGCTGACGCTTACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTGT 475
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 414 TCGCAGACGCGGACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGGCGGAACTGT 473
Query 476 TAACGGAAGAAGCGGACGGCGTTAGATTTAAGCT-ACCGGATGCAGTTACTGTTGCAGAT 534
| ||||| ||||| || ||||||||||| ||||| || |||||||||||| |||||||||
Sbjct 474 TGACGGATGAAGCAGAAGGCGTTAGATTGAAGCTGAC-GGATGCAGTTACCGTTGCAGAT 532
Query 535 AACGGCGTTTTGTATTTCACTGATGGTTCTTATAAGTACAATCTCCATCAGTTTAGT-TT 593
||||||||||||||||||||||||| ||||||||| || || ||||||| |||| | ||
Sbjct 533 AACGGCGTTTTGTATTTCACTGATGCTTCTTATAAATATGATATCCATCAATTTA-TCTT 591
Query 594 TGATATCTTGGAAGGCAAACCACACGGTCGTCTCATGAGCTTTGATCCCACCACAAAAGT 653
|||| ||||||||||||||||||| || |||||||| |||||||||||||||||| ||
Sbjct 592 TGATTTCTTGGAAGGCAAACCACATGGACGTCTCATAAGCTTTGATCCCACCACACGTGT 651
Query 654 GACACGTGTACTTCTCAGAGATCTCTACTTTGCTAATGGTGTCTCTC-TGTCTCCTGATC 712
|||||||| |||||||| || || ||||| |||||||| | || | | || |||||||
Sbjct 652 CACACGTGTCCTTCTCAGCGACCTTTACTTCGCTAATGGCATATC-CATATCCCCTGATC 710
Query 713 AAACCCATCTCGTCTTCTGCGAAACCCCCATAAGAAGATGTAGTAAGTATTACATCAA-T 771
||||||||||||||||||||||||| || |||||||||||||||||||| || || |
Sbjct 711 AAACCCATCTCGTCTTCTGCGAAACGGTCAGGAGAAGATGTAGTAAGTATTATAT-AAGT 769
Query 772 GGAGG-GCGCGTGGAGTTATTTATTCAAGGCTTACCAGGCTATCCAGATAACATCCGGTA 830
| ||| ||| |||||| |||| ||||||||||| || || | |||||||||||| || ||
Sbjct 770 G-AGGAGCGTGTGGAGGTATTGATTCAAGGCTTGCCGGGTTTTCCAGATAACATTCGATA 828
Query 831 TGATGGAGATGGACATTACTGGATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCT 890
|| ||||||||| |||||||||| || || ||||| |||||||||| |||||||||
Sbjct 829 CGACGGAGATGGATATTACTGGATCGCTTTGGTTTCGGAAGTAACAACGCCGTGGAAGCT 888
Query 891 TTCAATGAAATACCCATTCTTGAGGAAAATCACAGCTATGGCGGCTAAGTACGGCTATG- 949
|| ||||||||||| |||||||||||| ||| | | || ||||||||||| ||| ||
Sbjct 889 CTCGATGAAATACCCTTTCTTGAGGAAACTCATATCAATAGCGGCTAAGTATGGCG-TGG 947
Query 950 AACCTAT-GTTTATGGAGAATGCAGGAGTTTTGCAGGTGGATTTGGATGGGAACCCCATC 1008
|| ||| || |||| |||||||||| |||||||| |||||||||| ||||| ||||||
Sbjct 948 AAT-TATTGTCTATGAAGAATGCAGGCGTTTTGCAATTGGATTTGGACGGGAATCCCATC 1006
Query 1009 GCATACTACCATGATCAGGCGCTCTCTCACATAACCACCGGTGTCAAGATTGGGAACTAT 1068
|||| ||||||||||| | ||||||||||||| | ||| ||||||||||||||| ||
Sbjct 1007 GCATTGTACCATGATCATCCATTCTCTCACATAACAAGCGGAGTCAAGATTGGGAACCAT 1066
Query 1069 CTCTATTGTGGAAGTCTCTGGCATTCAC-ACATT-CTCCGACTTGATCTCCTAAAATACC 1126
||||||||||| ||||||| |||||| | ||||| || |||| |||||| | ||||| |
Sbjct 1067 CTCTATTGTGGGAGTCTCTTGCATTC-CTACATTACTA-GACTCGATCTCTTGAAATATC 1124
Query 1127 CTGCACAAAACAAG 1140
|||||||||| |||
Sbjct 1125 CTGCACAAAAGAAG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5