BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51460.1
Length=2379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485497 jgi|Araly1|485497|fgenesh2_kg.5__1489__AT3G51460.1 3445 0.0
Ahg497020 jgi|Araly1|497020|fgenesh2_kg.8__2836__AT5G66020.1 1692 0.0
> Ahg485497 jgi|Araly1|485497|fgenesh2_kg.5__1489__AT3G51460.1
Length=2162
Score = 3445 bits (1865), Expect = 0.0
Identities = 2071/2168 (96%), Gaps = 24/2168 (1%)
Strand=Plus/Plus
Query 227 GGTGGTCGTCCACTAATTAGATTCAGAGAGTCAGGACTTGATCCAACGATTAACGCAAAA 286
|||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||
Sbjct 1 GGTGGTCGTCCACTAATTAGATTC--AGAGTCAAGACTTGATCTAACGATTAACGCAAAA 58
Query 287 TCATTTGCACGTTCTACGCAACTCCATAATTTCAATTCCTCTCGACGTTTCACGGCGAAG 346
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 59 TCATTTGCACGTTCTACGCAACTCCATAATTTCAATTCTTCTCGACGTTTCACGGCGAAG 118
Query 347 CTTCAGATCTACTTTTCCCCAGCTCAGTATGGAGACGGTTGATTCTCGGAACAAATTGCA 406
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 CTTCAGATCTACTTTTCCCCAGCTCAGTATGGAGACGGCTGATTCTCGGAACAAATTGCA 178
Query 407 TTCCCGGTTACGTTTATGGGAATTCCCCGATCAGTACATCATCGAGCCAGCTGATGGCTC 466
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 TTCCCATTTACGTTTATGGGAATTCCCCGATCAGTACATCATCGAGCCAGCTGATGGTTC 238
Query 467 AGGCTCTTCATGTTTGGATATTAGTCGTGTTGATGCTTCCATGAAGCTCATCGATCAAGT 526
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 AGGCGCTTCATGTTTGGATATTAGTCGTGTTGATGCTTCCATGAAGCTCATCGATCATGT 298
Query 527 CCCAGAAAGCAATTCCGTGCGTGTCCCTAAAATCCGTTCCATTTTTGGTGTGGTTGGGAT 586
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 CCCAGAAAGCAATTCCGTGCGAGTCCCTAAAATCCGTTCCATTTTTGGTGTGGTTGGGAT 358
Query 587 GTTGAAGCTCCTTGCAGGATCATACTTGGTGGTTGTAACTGAGAGTGAACGTGTTGGATC 646
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 GTTGAAGCTCCTTGCAGGATCATACTTGGTGGTTGTAACCGAGAGTGAACGTGTTGGATC 418
Query 647 GTTTCTGGGGCATCCTATATTCAAAGTTACAACGCTTAAGGTTCTTCCTTGTGATCATTC 706
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 GTTTCTGGGCCATCCTATATTCAAAATTACAACGCTTAAGGTTCTTCCTTGTGATCATTC 478
Query 707 ACTTAAAAACTCGCCTGAAGAACAGAAAAAGATGGAGACCGAGTTCTCCAAGCT-CTTAA 765
|||| ||||||| |||||||||||||||||||||||||| |||||||||||||| | | |
Sbjct 479 ACTTCAAAACTCACCTGAAGAACAGAAAAAGATGGAGACTGAGTTCTCCAAGCTGC-TGA 537
Query 766 GTGTAGCAGAAAAGACAACTGGTCTCTATTTCTCATATGAAGTTAACTTAACATTGAGCT 825
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 GTGTCGCAGAAAAGACAACTGGTCTCTATTTCTCATATGAAGTTAACTTAACACTGAGCT 597
Query 826 CACAACGCTTGCATGAAATGGGTGATGAGTCTAAGTCACTTCCTCTGTGGAGACAGGCTG 885
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CACAACGGTTGCATGATTTGGGTGATGAGTCTAAGTCACTTCCTCTGTGGAGACAGGCTG 657
Query 886 AACCGAGGTTTCTTTGGAACAATTACATGTTGGAAGTTCTCATCGATAATAAGCTTGATC 945
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 AGCCGAGGTTTCTTTGGAACAATTACATGTTGGAAGTTCTAATCGATAATAAGCTTGATC 717
Query 946 AGTTCTTGCTTCCAGTAATTCAAGGG---A-GC-TT-TAAT-AG--CTTTGAAACAGCCA 996
|||||||||||||||||||||||||| | | || | || || ||||||||||||||
Sbjct 718 AGTTCTTGCTTCCAGTAATTCAAGGGAATATCCTTTGTTATCAGTTCTTTGAAACAGCCA 777
Query 997 TTGGAAGAGATATTGTTGACATTACTCTGATTGCTAGGAGATGCACTAGGAGAAACGGTA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGGAAGAGATATTGTTGACATTACTCTGATTGCTAGGAGATGCACTAGGAGAAACGGTA 837
Query 1057 CACGTATGTGGAGAAGAGGAGCGGATCTTGATGGCTATGTTGCTAATTTTGTGGAGACTG 1116
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 838 CACGTATGTGGCGAAGAGGAGCTGATCTTGATGGCTATGTTGCTAATTTTGTGGAGACTG 897
Query 1117 AGCAAATTGTACAGATGAATGGGTATACGTCATCATTTGTTCAGGTCAGAGGATCCATGC 1176
||||||||||||| |||||||| ||| | ||||||||||| |||||||| |||||||| |
Sbjct 898 AGCAAATTGTACAAATGAATGGATATTCTTCATCATTTGTGCAGGTCAGGGGATCCATAC 957
Query 1177 CTTTTATGTGGGAGCAGGTTGTAGATCTGACTTACAAGCCCAAGTTTGAAATTGTCCAAC 1236
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 958 CTTTTATGTGGGAGCAAGTTGTAGATCTAACTTACAAACCCAAGTTTGAAATTGTCCAAC 1017
Query 1237 CTGAAGAAGCTAAACGGATAGCTGAGCGTCACTTTTTGGACCTTAGGAAAAAATATGGAT 1296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTGAAGAAGCTACACGGATAGCTGAGCGTCACTTTTTGGACCTTAGGAAAAAATATGGAT 1077
Query 1297 CAGTTTTGGCAGTTGATCTCGTTAACAAGCAAGGCGGTGAGGGGCGCTTATGCGAGAAGT 1356
|||||||||||||||| || ||||| ||||| |||||||||||||||||| |||||||||
Sbjct 1078 CAGTTTTGGCAGTTGACCTTGTTAATAAGCATGGCGGTGAGGGGCGCTTAAGCGAGAAGT 1137
Query 1357 ATGCTACTGTTATGCAACACATTACTGGGGATGATATAAGGTACCTGCACTTTGATTTCC 1416
||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 1138 ATGCTACTGTTATGCAACACATTGCTGGGGATGATATAAGATACCTGCACTTCGATTTCC 1197
Query 1417 ATCAAATTTGTGGGCATATTCATTTTGAGCGCTTATCAATTCTGTACGAGCAGATCGAGG 1476
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1198 ATCAAGTTTGTGGGCATATTCATTTTGAGCGCTTATCAATTCTTTACGAGCAGATCGAGG 1257
Query 1477 GTTTTCTCGAAAAGAATGGGTACTTTCTGTTGAATGAAAAGGGTGAGAAAATGAAGGAGC 1536
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1258 GGTTTCTCGAAAAAAATGGGTACTTTCTGTTGAATGAAAAGGGTGAGAAAATGAAGGACC 1317
Query 1537 AGCTTGGTGTTGTCCGATCAAACTGCATAGATTGCTTAGACCGTACAAATGTTACCCAGA 1596
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1318 AGCTTGGTGTTGTCCGATCAAACTGCATAGATTGCTTAGACCGTACAAATGTCACCCAGA 1377
Query 1597 GCATGATAGGTCGAAAGATGTTAGAAGTTCAACTCAAAAGGATTGGAGTTTTTGGCGCTG 1656
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 GCATGATAGGTCGAAAAATGTTAGAACTTCAACTCAAAAGGATTGGAGTTTTTGGCGCTG 1437
Query 1657 AAGAAACCATAAGCTCACATCTGAATTTTGACGAACACTATAAAATATTATGGGCTAATC 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAGAAACCATAAGCTCACATCTGAATTTTGACGAACACTATAAAATATTATGGGCTAATC 1497
Query 1717 ATGGTGATGAAATCAGCATTCAGTACTCTGGTACTCCTGCACTTAAAGGAGATTTCGTTA 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATGGTGATGAAATCAGCATTCAGTACTCTGGTACTCCTGCACTTAAAGGAGATTTCGTTA 1557
Query 1777 GGTATGGGCATCGGACTGCCCATGGTGTCCTTAAAGATGGTTGGAGCTCCCTCAGACGCT 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GGTATGGGCATCGGACTGCCCATGGTGTCCTTAAAGATGGTTGGAGCTCCCTCAGACGCT 1617
Query 1837 ATTACCTGAATAACTTTGCTGATGGAACTAAGCAGGATGCAATTGATCTCTTGCAAGGGC 1896
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1618 ATTACCTGAATAACTTTGCTGATGGAACTAAGCAGGATGCAATTGATCTCCTGCAAGGGC 1677
Query 1897 ACTACATAGTTGCTGTGAGCCGAGACATGGCTCCTGTACCTCAAAAGGGAGGCCTTGAGG 1956
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1678 ACTACATAGTTGCTGTGAGCCGAGACATGGCTCCTGTACCTCAAAGGGGAGGCCTTGAGG 1737
Query 1957 CTGTAGCCAACTTCCCAGTGGCATTGTTCGTGGTTCTGATGAGTTTCTGGTTTGCAACAA 2016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 CTGTAGCCAACTTCCCAGTGGCATTGTTCGTGGTTCTGATGAGTTTCTGGTTTGCAACAG 1797
Query 2017 TGTCTCTAAAACAAACTGGGAGTGATTATAAGCATAAGCACTTGTTCTTCTCATTGTTGT 2076
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1798 TGTCTCTAAAACAAGCTGGGAGTGATTATAAGCATAAGCACTTATTCTTCTCATTGTTGT 1857
Query 2077 GGACGGGAATTTGCGTGGGCATGGCTGCACTGGTGAGGGCCAATGGCAGGATCTTCTGTA 2136
||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 1858 GGACGGGAATTTGTGTGGGCATGGCTGCACTGGTGAGGGCAAATGGCCGGATCTTCTGCA 1917
Query 2137 ACCGACCTCGTCTGCACAAGCCCAGAGGCTGATTCATTT---C-----GTGAGATCAATT 2188
|||| |||||||||||||||||||||||||||||||||| | ||| ||||| ||
Sbjct 1918 ACCGGCCTCGTCTGCACAAGCCCAGAGGCTGATTCATTTTATCCACTCGTGTGATCA-TT 1976
Query 2189 AATTAAAGACATGGAACTCAAGTCGGAGACAAAAGTTTTCTCCCTTCGATTGTTTTATTT 2248
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1977 AATTAAAGACATGGAACTCAAGTCGGAGCCAAAAGTTTTCTCCCTTTGATTGTTT-ATTT 2035
Query 2249 TATTGTATCAAAATTGGACCTTGTGACACCATCTAGAGGCAATTGTCTCAGGTTTGGATC 2308
||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 2036 TATTGTATCAATGTTGGACCTTGTGACACCATCTAGAGGCAAATGTCTCACGTTTGGATC 2095
Query 2309 CCTCATGATTTAATACTCCCACAGCCATCAAATGACTCGATACAGTTACACATCTTTCTT 2368
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2096 CCTCATGATTTAATACTCCCACAGCCATCAA-TGACTCGATACAGTTACACATCTTTCTT 2154
Query 2369 CATGTTCA 2376
| ||||||
Sbjct 2155 CTTGTTCA 2162
> Ahg497020 jgi|Araly1|497020|fgenesh2_kg.8__2836__AT5G66020.1
Length=1782
Score = 1692 bits (916), Expect = 0.0
Identities = 1500/1776 (84%), Gaps = 63/1776 (4%)
Strand=Plus/Plus
Query 417 CGTTTATGGGAATTCCCCGATCAGTACATCATCGAGCCAGCTGATGGCTCAGGCTCTTCA 476
||||||||||||||||| ||||||||| ||||||||||| | ||||| || | |||||
Sbjct 34 CGTTTATGGGAATTCCCTGATCAGTACGTCATCGAGCCAACCGATGGTTCCTCCGCTTCA 93
Query 477 TGTTTGGATATTAGTCGTGTTGA-TGCTTCCATGAAGCTCATCGATCAAGTCCCAGAAAG 535
|||||||| ||||| ||| |||| || |||||||||||||| |||||||| ||||| |
Sbjct 94 TGTTTGGACATTAGCCGTCTTGACGGC-TCCATGAAGCTCATTGATCAAGTAGCAGAATG 152
Query 536 CAATTCCGTGCGTGTCCCTAAAATCCGTTCCATTTTTGGTGTGGTTGGGATGTTGAAGCT 595
||| || ||||||||||||||||||| |||||||| |||||||| |||||| |||||||
Sbjct 153 CAACTCTTTGCGTGTCCCTAAAATCCGCTCCATTTTCGGTGTGGTCGGGATGCTGAAGCT 212
Query 596 CCTTGCAGGATCATACTTGGTGGTTGTAACTGAGAGTGAA-CGTGTTGGATCGTTTCTGG 654
||| |||||||| ||||| || ||||| || ||||| ||| | |||||| |||||| |||
Sbjct 213 CCTGGCAGGATCCTACTTAGTAGTTGTGACAGAGAGCGAATC-TGTTGGCTCGTTTTTGG 271
Query 655 GGCATCCTATATTCAAAGTTACA-ACGCTTAAGGTTCTTCCTTGTGATCATTCACTTAAA 713
| ||||||||||||||| ||| | |||| ||| ||||||||||||||||||||||| ||
Sbjct 272 GACATCCTATATTCAAAATTA-ATTCGCTCAAGTTTCTTCCTTGTGATCATTCACTTGAA 330
Query 714 AACTCGCCTGAAGAACAGAAAAAGATGGAGACCGAGTTCTCCAAGCT-CTTAAGTGTAGC 772
||||| | |||||||||||||||||||||||| || ||||| | ||| | |||| || ||
Sbjct 331 AACTCTCATGAAGAACAGAAAAAGATGGAGACTGACTTCTCTAGGCTGC-TAAGCGTCGC 389
Query 773 AGAAAAGACAACTGGTCTCTATTTCTCATATGAAGTTAACTTAACAT-TGAGCTCACAAC 831
||| | ||||||||| ||||| |||||||||||| | ||||| || | | | | |||| |
Sbjct 390 AGAGAGGACAACTGGGCTCTACTTCTCATATGAAATAAACTTGAC-TCTCACCGCACAGC 448
Query 832 GCTTGCATGAAATGGGTGATGAGTCTAAGTCACTTCCTCTGTGGAGACAGGCTGAACCGA 891
| |||||||| |||||||||||||||||| |||||| |||||||||||||||| || |
Sbjct 449 GGTTGCATGATTTGGGTGATGAGTCTAAGTTGCTTCCTTTGTGGAGACAGGCTGAGCCTA 508
Query 892 GGTTTCTTTGGAACAATTACATGTTGGAAGTTCTCATCGATAATAAGCTTGATCAGTTCT 951
| ||||| |||||||| || ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 509 GATTTCTATGGAACAACTATATGTTAGAAGTTCTTATCGAAAATAAGCTTGATCAGTTCT 568
Query 952 TGCTTCC-AGTAA--TT-C--AA----G--GGA-GCTTTAATAGCTTTGAAACAGCCATT 998
||||||| | || || | || | | | ||| |||| ||| |||||||||||
Sbjct 569 TGCTTCCTA-CAATTTTCCTTAACCCTGCATCACGTTTTCATAGTTTTCAAACAGCCATT 627
Query 999 GGAAGAGATATTGTTGACATTACTCTGATTGCTAGGAGATGCACTAGGAGAAACGGTACA 1058
||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 628 GGAAGAGATATCGTTGACATTACTCTGATTGCTAGGAGATGCTCTAGAAGAAATGGTACG 687
Query 1059 CGTATGTGGAGAAGAGGAGCGGATCTTGATGGCTATGTTGCTAATTTTGTGGAGACTGAG 1118
|| |||||| || ||||||| || | |||||| |||||||||||||||||||||||||||
Sbjct 688 CGCATGTGGCGACGAGGAGCTGACCCTGATGGTTATGTTGCTAATTTTGTGGAGACTGAG 747
Query 1119 CAAATTGTACAG-ATGAATGGGTATACGTCATCATTTGTTCAGGTCAGAGGATCCATGCC 1177
|||||||| | | ||||| || || || ||||||||||||||||| ||||||||||||||
Sbjct 748 CAAATTGTGC-GCATGAACGGATACACATCATCATTTGTTCAGGTTAGAGGATCCATGCC 806
Query 1178 TTTTATGTGGGAGCAGGTTGTAGATCTGACTTACAAGCCCAAGTTTGAAATTGTCCAACC 1237
||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 807 TTTTATGTGGGAGCAAATTGTAGATCTGACCTACAAGCCCAAGTTTGAGATTGTCCAACC 866
Query 1238 TGAAGAAGCT-AAACGGATAGCTGAGCGTCACTTT-TTGGACCTTAGGAAAAAATATGGA 1295
|||||||||| | |||||||||||||||||||| | || | | |||||||||||||||
Sbjct 867 TGAAGAAGCTGTGA-GGATAGCTGAGCGTCACTTTCTCGG-CGTAAGGAAAAAATATGGA 924
Query 1296 TCAGTTTTGGCAGTTGATCTCGTTAACAAGCAAGGCGGTGAGGGGCGCTTATGCGAGAA- 1354
||||||||||| |||||||| || || ||||| || |||||||||||| || | || ||
Sbjct 925 TCAGTTTTGGCGGTTGATCTTGTCAATAAGCATGGAGGTGAGGGGCGCCTAAGTGA-AAG 983
Query 1355 GTATGCTA-CTGTTATGCAACACATTACTGGGGATGATATAAGGTACCTGCACTTTGATT 1413
|| ||| | || |||||| ||||| ||||| |||||| |||| ||||||||||||||||
Sbjct 984 GTTTGC-AGGTGCTATGCAGCACATCACTGGTGATGATGTAAGATACCTGCACTTTGATT 1042
Query 1414 TCCATCAAATTTGTGGGCATATTCATTTTGAGCGCTTATCAATTCTGTACGAGCAGATCG 1473
||||||| || ||||| |||||||| |||||||||||| ||||| |||| |||||||| |
Sbjct 1043 TCCATCACATATGTGGCCATATTCACTTTGAGCGCTTAGCAATTTTGTATGAGCAGATGG 1102
Query 1474 AGGGTTTTCTCGA-AAAGAATGGGTACTTTCTGTTGAATGAAAAGGGTGAGAAAATGAAG 1532
||| ||| ||||| ||| || ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1103 AGGATTTCCTCGAGAAA-AACGGGTACTTTTTGTTTAATGAAAAGGGTGAGAAAATGAAG 1161
Query 1533 GAGCAGCTTGGTGTTGTCCGATCAAACTGCATAGATTGCTTAGACCGTACAAATGTTACC 1592
|||||||||||| |||| ||| |||||||||||||||||||||||||||| ||| |
Sbjct 1162 GAGCAGCTTGGTATTGTGCGAACAAACTGCATAGATTGCTTAGACCGTACTAAT---A-- 1216
Query 1593 CAGAGCATGATAGGTCGAAAGATGTTAGAAGTTCAACTCAAAAGGATTGGAGTTTTTGGC 1652
| ||||||||| ||||| ||||| ||| ||||||||||||||||||| ||||||||
Sbjct 1217 --G--CATGATAGGCCGAAACATGTTGGAATTTCAACTCAAAAGGATTGGTGTTTTTGGT 1272
Query 1653 GCTGAAGAAACCATAAGCTCACATCTGAATTTTGACGAACACTATAAAATATTATGGGCT 1712
|| ||||| | |||||||| ||| |||||||| ||| |||||| ||||| ||||||
Sbjct 1273 GCCGAAGAGGCTATAAGCTCGCATAAAAATTTTGATGAATGCTATAAGATATTGTGGGCT 1332
Query 1713 AATCATGGTGATGAAATCAGCATTCAGTACTCTGGTACTCCTGCACTTAAAGGAGATTTC 1772
||||| |||||||| || |||||||| ||||| || |||||||||||||||||||||||
Sbjct 1333 AATCACGGTGATGACATTAGCATTCAATACTCCGGCACTCCTGCACTTAAAGGAGATTTT 1392
Query 1773 GTTAGGTATGGGCATCGGACTGCCCATGGTGTCCTTAAAGATGGTTGGAGCT-CCCTCAG 1831
|| |||||||| || |||||| ||| || |||||| ||||||| |||| | ||||| |
Sbjct 1393 GTCAGGTATGGTCAAAGGACTGTCCAAGGAGTCCTTCAAGATGGCTGGAA-TGCCCTC-G 1450
Query 1832 -ACGCTATTACCTGAATAACTTTGCTGATGGAACTAAGCAGGATGCAATTGATCTCT-TG 1889
|||||| || ||||| || ||||||||||||||||||||||||||||||||||| | ||
Sbjct 1451 CACGCTACTATCTGAACAATTTTGCTGATGGAACTAAGCAGGATGCAATTGATCT-TGTG 1509
Query 1890 CAAGGGCACTACATAGTTGCTGTGAGCCGAGACATGGCTCCTGTACCTCAAAAGGGAGGC 1949
||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1510 CAAGGACACTATATAGTTGCTGTGAGCCGAGACATGGCTCCTGTGCCTCGAAAGGGAGGT 1569
Query 1950 CTTGAGGCTGTAGCCAACTTCCCAGTGGCATTGTTCGTGGTTCTGATGAGTTTCTGGTTT 2009
|||||||||||||| ||||| || ||||| ||| | ||| ||||||| ||||||||||||
Sbjct 1570 CTTGAGGCTGTAGCTAACTTTCCGGTGGCTTTGATGGTGATTCTGATCAGTTTCTGGTTT 1629
Query 2010 GCAACAATGTCTCTAAAACAAACTGGGAGTGATTATAAGCATAAGCACTTGTTCTTCTCA 2069
|||||||||||| | |||||| ||||||| | | || ||||||||| || ||||||
Sbjct 1630 GCAACAATGTCTGTCAAACAAGTTGGGAGT-AGT-TA----TAAGCACTTATTTTTCTCA 1683
Query 2070 TT-GTTGTGGACGGGAATTTGCGTGGGCATG--GCTGCACTGGTGAGGGCCAATGGCAGG 2126
|| ||| ||| |||| || | || | | || || ||||| ||||||||||||||| ||
Sbjct 1684 TTTGTT-TGGGCGGGCATCAGTGTAG-C-TGTCGCAGCACTCGTGAGGGCCAATGGCCGG 1740
Query 2127 ATCTTCTGTAACCGACCTCGTCTGCACAAGCCCAGA 2162
|||||||| ||||| ||| |||||||||||||||||
Sbjct 1741 ATCTTCTGCAACCGGCCTTGTCTGCACAAGCCCAGA 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89626346485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5