BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G51500.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485501 jgi|Araly1|485501|fgenesh2_kg.5__1493__AT3G51500.1         531    3e-150


> Ahg485501 jgi|Araly1|485501|fgenesh2_kg.5__1493__AT3G51500.1
Length=511

 Score =  531 bits (287),  Expect = 3e-150
 Identities = 349/377 (93%), Gaps = 11/377 (3%)
 Strand=Plus/Plus

Query  53   GTGAAACCCTAGACAAATCGCAGAGATGCAAGATTCAAAGATTCCACC-TTTCTCTGAAG  111
            ||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||| 
Sbjct  27   GTGAAACCCTAAACAAATCGCAGAGATGCAAAATTCAAAGATTCCACCGTTT-TCTGAAA  85

Query  112  CAAAAAGAATGAAGATTCCTACTCCAAAACAACCCTTGACTCAACTACCACCACGTATCG  171
            ||||||||||||||||| |||||||||||||||||||||| ||| ||||| || | ||||
Sbjct  86   CAAAAAGAATGAAGATTTCTACTCCAAAACAACCCTTGACCCAATTACCATCAAGAATCG  145

Query  172  GGAAAAAAGTTTCAAATCGGAGCAAATCGAACCAGGTTCATGCGATTTCACATCAACTTG  231
            ||||||||||||||||||||||     |  |  || ||||||||||||||||||||||||
Sbjct  146  GGAAAAAAGTTTCAAATCGGAG-----C--A--AGTTTCATGCGATTTCACATCAACTTG  196

Query  232  AGATGTCTCCAAATTCAGATTCATCTCCAGGAAACGAGTACAGAGCACTGAGACGCAAGT  291
            | |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||
Sbjct  197  ACATGTCTCCAAATTCAGATTCATCTTCAGGAAACGAGTACAGAGCACTGAGGCGTAAGT  256

Query  292  ATTTGCTGCTAGAGGAAGATAGTTTCGCGTTGGAGAGAGAGTTAAAGGAAGCAGAGGATG  351
            ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  257  ATTTGCTGCTAGAAGAAGATAGTTTCGCGTTGGAGAGAGAATTAAAGGAAGCAGAGGATG  316

Query  352  AGGTTAAAGCACTTGAAGATGAGAAACTTGAGCTCTTGGACAAACTCGTTGTTATGGAAG  411
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  317  AGGTTAAAGCACTTGAAGATGAGAAACTTGAGCTCTTGGACAAACTCGTTGTAATGGAAG  376

Query  412  GTTTAGTTGATCCTTGA  428
            |||||||||||||||||
Sbjct  377  GTTTAGTTGATCCTTGA  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5