BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51520.1
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485503 jgi|Araly1|485503|fgenesh2_kg.5__1495__AT3G51520.1 1797 0.0
> Ahg485503 jgi|Araly1|485503|fgenesh2_kg.5__1495__AT3G51520.1
Length=1250
Score = 1797 bits (973), Expect = 0.0
Identities = 1184/1281 (92%), Gaps = 34/1281 (3%)
Strand=Plus/Plus
Query 1 AGTTAAAAGATTGGTTATTTGGGCTCTGC-A-CTCAAGTGAGAGAGAAGATAGATAGATC 58
||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct 1 AGTTAAAAGATTGGTTATTTGGGCTCT-CTACCTTAAGTGAGAGAGAAGATAGATAGATC 59
Query 59 TGAGTAGAATCTTCGATTCATTATTCGTTGTCGTCGTTCATCTGTGAGAAGCGGACAAAC 118
|||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||
Sbjct 60 TGAGTAGAATCTTCGA-T-A-CATTCATTGTCGTCGTTCATCTGTGAGAAGCGGACAAAC 116
Query 119 CAAAGAATCCACCGGAGCTAGTGATATGGGTGGTTCCAGAGAGTTCCGAGCTGAGGAACA 178
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 117 CAAAGAATCCGCGGGAGCTAGTGATATGGGCGGTTCCAGAGAGTTCCGAGCTGAGGAACC 176
Query 179 TTCAAATCAATTCCACTCTATCATCGCCATGGCCATCTGGCTTGGCGCCATTCACTTCAA 238
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 177 CTCAAACCAATTCCACTCGATCATCGCCATAGCCATCTGGCTTGGCGCCATTCACTTCAA 236
Query 239 CGTCGCTCTTGttctctgttctctcattttccttcctccttctctatctctcatggtctt 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 237 CGTCGCTCTTGTTCTCTGTTCTCTCATTTTCCTTCCTGCTTCTCTATCTCTCATGGTCTT 296
Query 299 gggcttgctctctctGTTTATCTTTATCCCAATCGATCATCGTAGCAAATATGGTCGTAA 358
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 297 GGGCTTGCTCTCTCTGTTTATCTTCATCCCAATCGACCATCGTAGCAAATACGGTCGTAA 356
Query 359 GCTCGCTAGGTACATATGCAAGCACGCGTGTAATTATTTCCCCGTCTCTCTGTACGTCGA 418
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 357 GCTCGCTAGGTACATATGCAAGCACGCGTGTAGTTATTTCCCTGTCTCTCTGTACGTCGA 416
Query 419 GGATTACGAAGCTTTCCAGCCTAATCGTGCCTATGTCTTTGGTTATGAACCACATTCGGT 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGATTACGAAGCTTTTCAGCCTAATCGTGCCTATGTCTTTGGTTATGAACCACATTCGGT 476
Query 479 GCTACCGATTGGAGTTGTTGCTCTTTGTGATCTCACAGGGTTTATGCCTATTCCTAACAT 538
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 477 GTTACCGATTGGAGTTGTTGCTCTTTGTGATCTCACAGGGTTTATGCCTCTTACTAATAT 536
Query 539 TAAAGTTCTTGCAAGTAGTGCTATATTCTACACTCCCTTTCTAAGGCATATATGGACATG 598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 TAAAGTTCTTGCAAGTAGTGCTATTTTCTACACTCCCTTTCTAAGGCATATATGGACATG 596
Query 599 GTTAGGGCTCACCGCTGCTTCTAGGAAGAATTTCACTTCCCTTTTGGATTCTGGCTACAG 658
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTTAGGCCTCACCGCTGCTTCTAGGAAGAATTTCACTTCCCTTTTGGATTCTGGCTACAG 656
Query 659 TTGTGTTCTTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTGTGTTCTTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGAC 716
Query 719 TGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAGGGGAGCCCTCT 778
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 717 TGTCTTCCTTTCAAGGAGAAGAGGTTTTGTGCGCATAGCCATGGAACAGGGGAGTCCTCT 776
Query 779 GGTTCCAGTATTCTGCTTTGGTCAGGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGA 838
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 777 GGTTCCAGTGTTCTGCTTTGGTCAGGCACGAGTGTACAAATGGTGGAAGCCGGAATGGGA 836
Query 839 TCTCTATCTTAAACTATCTAGAGCAATCAGATTCACCCCGATCTGCTTCTGGGGAGTTTT 898
||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 837 TCTCTATCTCAAACTATCTAGAGCAATCAGGTTTACTCCGATCTGCTTCTGGGGAGTTTT 896
Query 899 TGGATCACCATTACCGTGTCGACAGCCTATGCATGTGGTCGTTGGTAAACCAATAGAAGT 958
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 897 GGGGTCACCATTACCGTGTCGACAGCCTATGCACGTGGTAGTTGGTAAACCAATAGAAGT 956
Query 959 CACAAAAACTCTGAAGCCAACTGACGAAGAGATTG-CTAAGTTTCATGGCCAGTATGTGG 1017
||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||
Sbjct 957 TACAAAAACTCTGAAGCCAACTGATGAAGAGATTGAC-AAGTTCCATGGCCAGTATGTGG 1015
Query 1018 AAGCGCTTAGGGATCTGTTTGAGAGGCACAAGTCCCGAGTCGGCTATGATCTTGAGCTGA 1077
|||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||
Sbjct 1016 AAGCGCTTAGGGATCTGTTTGAAAGGCACAAGTCCCGAGTAGGTTATGATCTTGAGTTGC 1075
Query 1078 AAATTCTTTGAACAAAATCTCCAATGGAAATAATTACTTGTGTGTATCCTTCATTAATTG 1137
| ||||||||||| ||||||| |||||||| | ||||||||||||| | ||| | |
Sbjct 1076 ACATTCTTTGAACGTAATCTCCGATGGAAATTACTACTTGTGTGTAT--T--ATT--T-G 1128
Query 1138 TTACCTTGGAGCTGGATTTGGACTTAATATAAATGACTACATCATGTAGTCTACATGTAT 1197
||||||||| |||||||||||| || || | | | ||||| | | || || |
Sbjct 1129 TTACCTTGGTGCTGGATTTGGA-TT--TA-A--T-A-TACAT---G-A--CTGCA---AC 1171
Query 1198 TGCATGTCTTTAGCATCGACTGTTGAAGTAATGGAATACGTTTATAAAGCCTGTAAATTA 1257
| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1172 T--ATGTCTTTAACATCGACTGTTGTAGTAATGGAATACGTTTATAAAGCCTGTAAATTA 1229
Query 1258 CATGTCGTCTTGCACAAGAGT 1278
| | | ||||||| ||||||
Sbjct 1230 CTTTTAATCTTGCAGAAGAGT 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49750406685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5