BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51520.1 Length=1330 Score E Sequences producing significant alignments: (Bits) Value Ahg485503 jgi|Araly1|485503|fgenesh2_kg.5__1495__AT3G51520.1 1797 0.0 > Ahg485503 jgi|Araly1|485503|fgenesh2_kg.5__1495__AT3G51520.1 Length=1250 Score = 1797 bits (973), Expect = 0.0 Identities = 1184/1281 (92%), Gaps = 34/1281 (3%) Strand=Plus/Plus Query 1 AGTTAAAAGATTGGTTATTTGGGCTCTGC-A-CTCAAGTGAGAGAGAAGATAGATAGATC 58 ||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||| Sbjct 1 AGTTAAAAGATTGGTTATTTGGGCTCT-CTACCTTAAGTGAGAGAGAAGATAGATAGATC 59 Query 59 TGAGTAGAATCTTCGATTCATTATTCGTTGTCGTCGTTCATCTGTGAGAAGCGGACAAAC 118 |||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||| Sbjct 60 TGAGTAGAATCTTCGA-T-A-CATTCATTGTCGTCGTTCATCTGTGAGAAGCGGACAAAC 116 Query 119 CAAAGAATCCACCGGAGCTAGTGATATGGGTGGTTCCAGAGAGTTCCGAGCTGAGGAACA 178 |||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 117 CAAAGAATCCGCGGGAGCTAGTGATATGGGCGGTTCCAGAGAGTTCCGAGCTGAGGAACC 176 Query 179 TTCAAATCAATTCCACTCTATCATCGCCATGGCCATCTGGCTTGGCGCCATTCACTTCAA 238 ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 177 CTCAAACCAATTCCACTCGATCATCGCCATAGCCATCTGGCTTGGCGCCATTCACTTCAA 236 Query 239 CGTCGCTCTTGttctctgttctctcattttccttcctccttctctatctctcatggtctt 298 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 237 CGTCGCTCTTGTTCTCTGTTCTCTCATTTTCCTTCCTGCTTCTCTATCTCTCATGGTCTT 296 Query 299 gggcttgctctctctGTTTATCTTTATCCCAATCGATCATCGTAGCAAATATGGTCGTAA 358 |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 297 GGGCTTGCTCTCTCTGTTTATCTTCATCCCAATCGACCATCGTAGCAAATACGGTCGTAA 356 Query 359 GCTCGCTAGGTACATATGCAAGCACGCGTGTAATTATTTCCCCGTCTCTCTGTACGTCGA 418 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 357 GCTCGCTAGGTACATATGCAAGCACGCGTGTAGTTATTTCCCTGTCTCTCTGTACGTCGA 416 Query 419 GGATTACGAAGCTTTCCAGCCTAATCGTGCCTATGTCTTTGGTTATGAACCACATTCGGT 478 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GGATTACGAAGCTTTTCAGCCTAATCGTGCCTATGTCTTTGGTTATGAACCACATTCGGT 476 Query 479 GCTACCGATTGGAGTTGTTGCTCTTTGTGATCTCACAGGGTTTATGCCTATTCCTAACAT 538 | ||||||||||||||||||||||||||||||||||||||||||||||| || |||| || Sbjct 477 GTTACCGATTGGAGTTGTTGCTCTTTGTGATCTCACAGGGTTTATGCCTCTTACTAATAT 536 Query 539 TAAAGTTCTTGCAAGTAGTGCTATATTCTACACTCCCTTTCTAAGGCATATATGGACATG 598 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 537 TAAAGTTCTTGCAAGTAGTGCTATTTTCTACACTCCCTTTCTAAGGCATATATGGACATG 596 Query 599 GTTAGGGCTCACCGCTGCTTCTAGGAAGAATTTCACTTCCCTTTTGGATTCTGGCTACAG 658 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 GTTAGGCCTCACCGCTGCTTCTAGGAAGAATTTCACTTCCCTTTTGGATTCTGGCTACAG 656 Query 659 TTGTGTTCTTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGAA 718 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 TTGTGTTCTTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGAC 716 Query 719 TGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAGGGGAGCCCTCT 778 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 717 TGTCTTCCTTTCAAGGAGAAGAGGTTTTGTGCGCATAGCCATGGAACAGGGGAGTCCTCT 776 Query 779 GGTTCCAGTATTCTGCTTTGGTCAGGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGA 838 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct 777 GGTTCCAGTGTTCTGCTTTGGTCAGGCACGAGTGTACAAATGGTGGAAGCCGGAATGGGA 836 Query 839 TCTCTATCTTAAACTATCTAGAGCAATCAGATTCACCCCGATCTGCTTCTGGGGAGTTTT 898 ||||||||| |||||||||||||||||||| || || ||||||||||||||||||||||| Sbjct 837 TCTCTATCTCAAACTATCTAGAGCAATCAGGTTTACTCCGATCTGCTTCTGGGGAGTTTT 896 Query 899 TGGATCACCATTACCGTGTCGACAGCCTATGCATGTGGTCGTTGGTAAACCAATAGAAGT 958 || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 897 GGGGTCACCATTACCGTGTCGACAGCCTATGCACGTGGTAGTTGGTAAACCAATAGAAGT 956 Query 959 CACAAAAACTCTGAAGCCAACTGACGAAGAGATTG-CTAAGTTTCATGGCCAGTATGTGG 1017 ||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||| Sbjct 957 TACAAAAACTCTGAAGCCAACTGATGAAGAGATTGAC-AAGTTCCATGGCCAGTATGTGG 1015 Query 1018 AAGCGCTTAGGGATCTGTTTGAGAGGCACAAGTCCCGAGTCGGCTATGATCTTGAGCTGA 1077 |||||||||||||||||||||| ||||||||||||||||| || |||||||||||| || Sbjct 1016 AAGCGCTTAGGGATCTGTTTGAAAGGCACAAGTCCCGAGTAGGTTATGATCTTGAGTTGC 1075 Query 1078 AAATTCTTTGAACAAAATCTCCAATGGAAATAATTACTTGTGTGTATCCTTCATTAATTG 1137 | ||||||||||| ||||||| |||||||| | ||||||||||||| | ||| | | Sbjct 1076 ACATTCTTTGAACGTAATCTCCGATGGAAATTACTACTTGTGTGTAT--T--ATT--T-G 1128 Query 1138 TTACCTTGGAGCTGGATTTGGACTTAATATAAATGACTACATCATGTAGTCTACATGTAT 1197 ||||||||| |||||||||||| || || | | | ||||| | | || || | Sbjct 1129 TTACCTTGGTGCTGGATTTGGA-TT--TA-A--T-A-TACAT---G-A--CTGCA---AC 1171 Query 1198 TGCATGTCTTTAGCATCGACTGTTGAAGTAATGGAATACGTTTATAAAGCCTGTAAATTA 1257 | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1172 T--ATGTCTTTAACATCGACTGTTGTAGTAATGGAATACGTTTATAAAGCCTGTAAATTA 1229 Query 1258 CATGTCGTCTTGCACAAGAGT 1278 | | | ||||||| |||||| Sbjct 1230 CTTTTAATCTTGCAGAAGAGT 1250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49750406685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5