BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51530.1
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485504 jgi|Araly1|485504|fgenesh2_kg.5__1496__AT3G51530.1 1770 0.0
> Ahg485504 jgi|Araly1|485504|fgenesh2_kg.5__1496__AT3G51530.1
Length=1427
Score = 1770 bits (958), Expect = 0.0
Identities = 1229/1358 (91%), Gaps = 26/1358 (2%)
Strand=Plus/Plus
Query 186 ATGGAACAAGGTGGCAAAAGTTCGAGAAAGCCAGGTTTTATGAGTGAGGACAGAATCAGT 245
|||||||||||||| ||||||||||||| | || ||||||| |||||||||| ||||||
Sbjct 1 ATGGAACAAGGTGGTAAAAGTTCGAGAATGGGAGATTTTATGCGTGAGGACAGGATCAGT 60
Query 246 GAGTTGCCTGAAGTTTTGCTTCTGCAGATACTGTCTTCACTTCCTACAAAACTTGTCATA 305
|||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 61 GAGTTGCCTGAAGTTTTGCTTCTGAAGATATTGTCTTCACTTCCTACGAAACTTGTCATA 120
Query 306 TCCACAAGTGTTTTGTCCAAACGATGGCTATCTCTTTGGAAAATGGTACAAAGACTCGAG 365
||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct 121 TCCACAAGTGTTTTGTCTAAACGATGGCGCTCTCTTTGGAAAATGGTACCAAGACTCGAG 180
Query 366 TTTGAATCTTCTCGAAACATATATGACTTTGCTGAAAACGTTACCAGGTCTTTGCTTTCA 425
|||||||||| ||||||||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 181 TTTGAATCTTATCGAAACATATATGAATTTGCAGAAAATGTTACCAGGTCTTTTCTTTCA 240
Query 426 CATAAAGCTCCAGTTCTAGAGAGTTTGCATCTGAAAGTTGGAGATCAATTTGATGGTGTT 485
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CATAAAGCTCCAGTTCTAGAGAGTTTGCATCTGAAAGTTAGAGATCAATTTGATGGTGTA 300
Query 486 TATGTTGGAGTATGGGCTACAATTGCATTTACACGCCATGTTCGTGAGTTCGTACTCGAT 545
||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 301 TATCTTGGAGTTTGGGCTACAATTGCATTTGCACGCCATGTGCGTGAGTTCGTACTCGAT 360
Query 546 CTTAGTTCTTACCATGGCCCT-CGAGTCAGATTTCCAACTAGCTTGTTTTGCTTTGATAC 604
||||||| || |||||| ||| | | |||||||||||| |||||||||||||||||| ||
Sbjct 361 CTTAGTTTTTGCCATGG-CCTGCAAATCAGATTTCCAAGTAGCTTGTTTTGCTTTGACAC 419
Query 605 ACTTGAGACCTTGAAAC-T-TG-ATTACGTTTATATTTATGTTCCTTGTCCGGTTTCTAT 661
||||||||||||||||| | || ||||||||||| || || |||||| || |||||||||
Sbjct 420 ACTTGAGACCTTGAAACTTATGAATTACGTTTATCTTGATTTTCCTTCTCTGGTTTCTAT 479
Query 662 GAAGTCCCTTAGAACTCTTCACCTTCTATCTGTGGTCTACAAAGGCGATGAATCTGGTCA 721
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||
Sbjct 480 GAAGTCCCTTAGAACTCTTCACCTTCTATCCCTGGTGTACAAAGGCGATGAATCTGTTCA 539
Query 722 TAATCTTTTTGCTAGCTGCCCTAATCTTGAACATTTGGTCCTGCGTCGAGGTTTCTTCT- 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 TAATCTTTTTTCTAGCTGCCCTAATCTTGAACATTTGGTCCTGCGTCGAGGTTTC-TCTC 598
Query 781 TTGATGCTG-TAGTGAATTTCATCATTGATGCGCCATCTTTGAAGACACTTTTGCTTTCC 839
|||| || || |||||||| |||||| || ||||||||||||||||| | |||||||
Sbjct 599 ATGATTATGTTA-AGAATTTCACCATTGAGGCACCATCTTTGAAGACACTATCGCTTTCC 657
Query 840 GATCCCTTTAGTGCGCGAGAGAGTAGTAGGGGATATGTGATAAAAGCTCCTTCTTTGAAG 899
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GATTCCTTTCGTGCGCGAGAGAGTAGT---GGATATGTGATAAAAGCTCCTTCTTTGAAG 714
Query 900 TACTTGGGAATTGAAAGTGTAGAAGGTTTTGAGTATTTTCTGATTGAGAATGTAACCGAG 959
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| | | |||
Sbjct 715 TACTTGGGAATTGAAAGTGTAGAAGGTTATGAGTTTTTTCTGATTGAGAATGCATCAGAG 774
Query 960 CTAGTTGAGGCAAATATTAGAAACGTTTCTAAGATAGTCAATGAGAATATTTTGGGATCT 1019
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 CTAGTTGAGGCTAGTATTAGAAACGTTTCTAAGATAGTCAATGAGAAGATTTTGGGATCT 834
Query 1020 CTCAAGTCAGCCAAACGTCTTTCCTTGGACTTATCACCTTTGAAGATTACATATCCTACT 1079
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTTGAGTCAGCCAAGCGTCTTTCCTTGGACTTATCACCTTTGAAGATTACATATCCTACT 894
Query 1080 GAAGTTATGTACCATCAGCTGGTATATCTGGAGATGCATACACATAAAGTGGAGTGGTGG 1139
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 895 GAAGTTATGTACCATCAACTGGTATATCTAGAGATGCATACACATAAAGTGGAGTGGTGG 954
Query 1140 AATCTACTTAC-GCACATGCTTGATAGCTCTCCTAAACTACAAGTCCTCAAGCTCATTGA 1198
||| | ||||| | |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 955 AATATGCTTACAGT-CATGCTCGATAGCTCTCCTAAACTACAAGTCCTCAAGCTGATTGA 1013
Query 1199 TCGTGAGACTCGTCATGAAAATCTAGAATTCGACAAAAAATACAAGGACCAAGGGAAATG 1258
|| ||| |||||||| |||||||||||||| ||||| |||| | |||||||||| ||||
Sbjct 1014 TCATGAAACTCGTCAGGAAAATCTAGAATTTAACAAACAATATACGGACCAAGGGGAATG 1073
Query 1259 GAATCAACCAAAGTATGTCCCTGAATGTCTC--G--A-A---AC-G---TTTATGTGGAG 1306
|||| | ||||||||||||||||||||| | | | | | | ||| ||||||
Sbjct 1074 GAATGAGCCAAAGTATGTCCCTGAATGTTTGTTGTCACATTTAGAGACATTTGTGTGGAA 1133
Query 1307 AAATTGCAATTGGGGAAGAGAAGAAGAGAAAGAAGTGGCGACGTACATTCTAAGGAACGC 1366
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1134 AAATTGCAATTGGGGAAGAGAAGAAGAGAAAGAAGTGGCTACATACATTCTAAGGAACGC 1193
Query 1367 AAGACAGCTGAAGAAGGCAACTTTCTCTACGGATCCCATTGAAGCGAAGAGGCTCTGTAA 1426
||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||
Sbjct 1194 AAGACAGCTGAAGAAGGCAACTTTCTCCACGGATCCTATTGAATCGAAAAGGCTCTGTAA 1253
Query 1427 ATTGGCCAAAAGACGTAAGATGCGCGAGGAATTGGATGGTGTGGTCATGACTTCCAATTC 1486
||||| |||||| ||||||||||| | ||||||||||||||||||| | |||||| ||
Sbjct 1254 GTTGGCAAAAAGAAGTAAGATGCGCAACGAATTGGATGGTGTGGTCAGGGCTTCCAGCTC 1313
Query 1487 ATGCCACCTTGTTTTTGAATTCGAATGATCTTATATGT 1524
| |||||||||| |||||||||||||||||||||||||
Sbjct 1314 AAGCCACCTTGTGTTTGAATTCGAATGATCTTATATGT 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63496438415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5