BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51540.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348254 jgi|Araly1|348254|fgenesh1_pg.C_scaffold_5001646 981 0.0
> Ahg348254 jgi|Araly1|348254|fgenesh1_pg.C_scaffold_5001646
Length=1284
Score = 981 bits (531), Expect = 0.0
Identities = 621/664 (94%), Gaps = 7/664 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGATCGGAGTCTGAAAAAGTCTCTCCCCGGTAAAAGCAATCGCCAGGCGGATGAG 60
||||||||||||||||||||||||||||| |||| |||||||| |||| ||| ||||||
Sbjct 1 ATGAGTGATCGGAGTCTGAAAAAGTCTCTTGCCGGAAAAAGCAACCGCCCGGCCGATGAG 60
Query 61 AATTTGGATCTCTTCTCAGTCAACCGTGGAACTTCTTTGGATGTTTTGATTAAACCAGGA 120
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AATTTTGATCTTTTCTCAGTCAACCGTGGAACTTCTTTAGATGTTTTGATTAAACCAGGA 120
Query 121 AGACATTCTTTCCAACAAGCTAAAGTTGCTAAGCATGGACCTGATGATGACAATAATCAC 180
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 121 AGACATTCTTTCCAACAAGCTAAAGTTGCTAAGCATGGCCCTGAAGATGACAAGAATCAC 180
Query 181 AATATACATGCAAATGAACCGCTTTATACCATTGCAGAAGTTCCATTAGGAGATCTTTCT 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGATACATGCAAATGAACCGCTTTATACCATTGCAGAAGTTCCATTAGGAGATCTTTCT 240
Query 241 AGATTGGTTCTAGAAGCTAGAAACACAACTTCCAAGCTTCAGTCCATAACCACTACAAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGATTGGTTCTAGAAGCTAGAAACACAACTTCCAAGCTTCAGTCCATAACCACTAAAAGG 300
Query 301 GTTCCTTTAAGGAGCGAGAGTGATCCATCTTCAAGACCAACGAGAAGCGGTTCAACAATT 360
| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GCTGCTTTAAGGAGCGAGAGTGATCCATCTTCAAGACCAACCAGAAGCGGTTCAACAATT 360
Query 361 CGTCCCTCCAACATTCCCACTATCAGATCCTCTTCGGTCCCCAAGAAGACAACAACAACA 420
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CGTCCCTCCAACATTCCCACCATCAGATCCTCATCGGTCCCCAAGAAGACAACAACAACA 420
Query 421 -CAAATTCAAGCTTCAGCTTCGGTTTCTTCTCCAAAAAGAACTGTCTCTCGATCTTTGAC 479
||| |||| ||||||||||| | ||||||||||||| ||| |||||| |||||||| ||
Sbjct 421 ACAATTTCA-GCTTCAGCTTCAGCTTCTTCTCCAAAACGAAATGTCTCACGATCTTTAAC 479
Query 480 TCCCTCATCACGCAAAACACCATCACCAACCTCAACTCCTTCAAGAATCAGTACAACTAC 539
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 TCCCTTATCACGCAAAACACCATCACCATCCTCAACTCCTTCAAGAATCAGTACAACTAC 539
Query 540 TTCAACCACTCCTTCCTTCAA-AACAGCTGGAGATGCTCAAAGATCAAGATCGTTGACTC 598
|||||| | |||||||||||| || ||||||||| |||||| ||||||||||||||||||
Sbjct 540 TTCAACAAATCCTTCCTTCAATAA-AGCTGGAGACGCTCAACGATCAAGATCGTTGACTC 598
Query 599 CAAGAGCAAAGCCTCAGATTGCAGCAAATGCAAGTAGTAGGACCAATGTGCGTTCTTCGT 658
||||| ||||||||||||||||||||||| |||||| || |||||||| |||||||| |
Sbjct 599 CAAGATCAAAGCCTCAGATTGCAGCAAATTCAAGTA--AG-ACCAATGTTCGTTCTTCAT 655
Query 659 CTGT 662
||||
Sbjct 656 CTGT 659
Score = 942 bits (510), Expect = 0.0
Identities = 589/628 (94%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 691 GTTTCAGCAACACCTCGGACACCGCCAAGACTAAAAGAAACAGTCACTCTAGCGTTTGGT 750
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||
Sbjct 658 GTTTCAGCAACACCTCGGACACCACCAAGACTAAAAGAAACGGTCACTCTAGCATTCGGT 717
Query 751 AGACCAGTGGGTCATGTTAACTCGCCAAAACGAAACACCTCACCGGATGTTACAAGAACG 810
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGACCAGTGGGGAATGTTAATTCGCCAAAACGAAACACCTCACCGGATGTTACAAGAACG 777
Query 811 AGGCCTAAAGGACGCTCTGCTTCTCCTTCTCTGATTCCGACTTTTTCAGGCACCTCACAT 870
||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 778 AGGCCTAAAGGGCGCTCTGCTTCTCCTTCTCGGATTCCGACTTTTTCAGGCGTCTCGCAT 837
Query 871 ACAACAACAACTCCCAAGTCTATAAAGCCATCTGCCACTGTTGCCGATTCAACTAGGCCA 930
|||||| ||||||||| ||| ||||||||||||||| ||||| |||||||||||||||
Sbjct 838 ACAACAGTAACTCCCAAATCTGTAAAGCCATCTGCCATTGTTGTGGATTCAACTAGGCCA 897
Query 931 GGAAGGAAGTTGTCAAGAGCTTCTGTTCAAATGGCTATCAATCACTTGGACTTGGCACGA 990
||||| || ||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 898 GGAAGAAAATTGTCTAGAGCTTCGGTTCAAATGGCTATCAATCACTTGGACGTGGCACGA 957
Query 991 AATGGTAAAGTTAGTACACATACGTTTTCAAGCCCAATGTTGTATCCACACAGCATCAGA 1050
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 958 AATGGTAAAGTTAGTACACATACGTTTTCAAGCACTATGTTGTATCCACACAGCATCAGA 1017
Query 1051 TCTTCTTCTTCGGGTCTAAGAAAACCGTGTGGTAGTAGTGAAGGCAGCTGCAGCAGCAGC 1110
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCTTCTTCTTCGGGTCTAAGAAAGCCGTGTGGTAGTAGTGAAGGCAGCTGCAGCAGCAGC 1077
Query 1111 AACCATGAAGAGGAAGATGGAAGAAGCTTAACGAAAGAAGGGAAC-AACACAGAGAACAA 1169
||||||||||||||||||||||||| ||||||||||||||| | | ||||| ||||| ||
Sbjct 1078 AACCATGAAGAGGAAGATGGAAGAAACTTAACGAAAGAAGG-AGCTAACACGGAGAATAA 1136
Query 1170 GAACGATAGTGCTCGTTACGACGCACTCTTGAATGTTAAAGATGTCAAGGATACAAACTG 1229
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GAAAGATAGTGCTCGTTACGACGCACTCTTGAATGTTAAAGATGTCAAGGATACAAACTG 1196
Query 1230 GCTACTTAACATTGATGATGAAtctcctcaatctctcatcttcgacaatgcttttgactc 1289
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 1197 GCTGCTTAACATTGATGATGAATCTCATCAATCTCTCATCTTCGACAATGCTTTCGAATC 1256
Query 1290 tcctcctgatctattctctcctctctGA 1317
|||||||||||||||| |||||||||||
Sbjct 1257 TCCTCCTGATCTATTCCCTCCTCTCTGA 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5