BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51580.2
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485510 jgi|Araly1|485510|fgenesh2_kg.5__1502__AT3G51580.1 1050 0.0
> Ahg485510 jgi|Araly1|485510|fgenesh2_kg.5__1502__AT3G51580.1
Length=1585
Score = 1050 bits (568), Expect = 0.0
Identities = 637/670 (95%), Gaps = 6/670 (1%)
Strand=Plus/Plus
Query 987 CTGCTAACTGGTTGATTCTAGTTCAAAATGAAGGTGA-AACATCTCTAAAAGCAAAAATT 1045
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 842 CTGCTAACTGGTTGATTCTAGTTCAAAATGAAGGTGAGAA-ATCTCTAAAAGCAAAAATT 900
Query 1046 GTTCTTCCGGTTAACGCTTTACAAGAGCTGACACTGCCAAAACACCAGAGTCAAAAAG-T 1104
|| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 901 GTACTTCCGGTTAACTCTTTACAAGAGCTGACACTGCCAAAACACCAGAGTC-AAAGGAT 959
Query 1105 AAACATATCCATTAGTGGAGATACAAACAAGATCATACTAGATACTGGAAAAGGACAGTG 1164
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 960 AAACATATCCATTAGTGGAGACACAAACAAGATCATACTAGACGCTGGAAAAGGAGAGTG 1019
Query 1165 TGCGCTTCACATGTACCCATCAGAAGAAAGCACCTTACCATTCCACTTTCCCTCATATGA 1224
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 TGCGCTTCACATGTACCCATCAGAAGAAAACACCTTACCATTCCACTTTCCCTCATATGA 1079
Query 1225 AAAACTAGTGACGCCCATTAACGGCGCTTATTTCTTAATAGTATCCGTCATTATTTTTGG 1284
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1080 AAAACTAGTGACGCCCATTAACGGCGCCTATTTCTTAATAGTATCCGTCGTTATTTTTGG 1139
Query 1285 GGGAATTTGGGCATTCTGTCTTTGCCGGAAGAATCGCCGTGCAGGCAGTGGAGTGCCTTA 1344
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1140 GGGAATTTGGGCATTCTGTCTGTGCCGGAAGAATCGCCGTGCAGGCACTGGAGTGCCTTA 1199
Query 1345 CCGTGAGCTAGAATTGAGTGGAGGACCAGGCTTGGAAAACGAGTCAGGGGTCCATGATGT 1404
||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1200 CCGTGAGCTAGAACTGAGCGGAGGACCAGGCTTGGAAAACGAGTCAGTGGTCCATGATGT 1259
Query 1405 GGAGACAGCAGACTGGGACGAGGGTTGGGATGATGATTGGGATGAGAATAATGCTGTGAA 1464
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGAGACAGCGGACTGGGACGAGGGTTGGGATGATGATTGGGATGAGAATAATGCTGTGAA 1319
Query 1465 ATCGCCGGGTAGTGCAGCAAAGAGTGTTAGCATATCTGCCAATGGCTTAACAGCGAGGGC 1524
|||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1320 ATCGCCCGGTGGTGCAGCAAAGAGTGTGAGCATCTCTGCCAATGGCTTAACAGCGAGGGC 1379
Query 1525 TCCAAACCGAGATGGCTGGGATCATGACTGGGACGACTAGAG-TGTTTGTGTTATAATCA 1583
||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1380 TCCGAACCGAGATGGCTGGGATCATGACTGGGACGACTAGAGAT-TTTGTGTTATAATCA 1438
Query 1584 TTGGATACCATTACAGAAGATTCAAAACCACTTGGATACAGTTTACTGCAAAGAAGGCAA 1643
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1439 GTGGATACTATTACAGAAGAGTCAAAACCACTTGGATACAGTTTACTGCAAAGAAGACGT 1498
Query 1644 GACAGGAAAA 1653
||||||||||
Sbjct 1499 GACAGGAAAA 1508
Score = 946 bits (512), Expect = 0.0
Identities = 697/781 (89%), Gaps = 34/781 (4%)
Strand=Plus/Plus
Query 159 GCCTGAACTGTGATCTGC-GTATCTGCGATGCGTTTT----G----GACCACTGATACCC 209
|||||||||||||||||| | |||||||||||||||| | ||||||||||||||
Sbjct 78 GCCTGAACTGTGATCTGCGGAATCTGCGATGCGTTTTGGACGACTAGACCACTGATACCC 137
Query 210 TGAAATATGAGCTGCTGCTGCAAATTTTCAAATCCAGTAAGTATCTTTGGATCAAATCAA 269
||||| ||||||| ||| |||||| ||| | | || | |||||||| ||||||
Sbjct 138 TGAAAAATGAGCTTCTGGTGCAAA-TTT----T-C---AA--A--TTTGGATCGAATCAA 184
Query 270 GAGCACCACCGGCGAATAAATCAAGCGAACGAATCATAATTTAGGGTTTGACTCTTATTG 329
|| |||||||||| |||||||||| ||| ||| |||||| |||||||||||| || ||||
Sbjct 185 GACCACCACCGGCTAATAAATCAACCGATCGAGTCATAAATTAGGGTTTGACCCTGATTG 244
Query 330 CGATGGATAGAAGTTC-GGTCTTAACACTTCTTCTATTGATTTTGTTCATCTCCAATGCT 388
| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 245 CAATGGATAGAAG-TCAAGTCTTATCACTTCTTCTATTGATTTTGTTCATCTCCAATGCT 303
Query 389 TCCTCCTTCGATAGATT-TCGTGAGCTAGTTGATGAAGAAACACAAAAGGATAATTCAAA 447
|| || ||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 304 TCTTCGTTCGATA-TTTCTCGTGAGCTAGTTGATGAAGAAACACACAAGGATAATTCAAA 362
Query 448 TTCAACCACTAAACAAGAGTCTCCGTTGATTAATCCTCAACCCA-TCGGAGATGGAAAAT 506
|||||||||||||||||| ||||||||| |||||||| |||||| | |||||||| ||||
Sbjct 363 TTCAACCACTAAACAAGACTCTCCGTTGCTTAATCCTAAACCCAGT-GGAGATGGTAAAT 421
Query 507 CTAATGTGACCTCATCAGAACCAACTCTGCCAACTAGTAATTCGAC-GAACACTAATCCT 565
||||||| |||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 422 CTAATGTTACCTCATCAGAACCTACTCTGCCAACTAGTAATTCGACGGATC-CTAATCCT 480
Query 566 AAAGAGCCTGATTCAATGAGTCCACCTCCTCCACTGATACCTGTAAATGAGAAGAATGAT 625
||||||||||||||| ||||||||||||| |||||| |||||| || ||||| |||||||
Sbjct 481 AAAGAGCCTGATTCAGTGAGTCCACCTCCGCCACTGCTACCTGGAATTGAGAGGAATGAT 540
Query 626 ACTAAAGTGTTAAATACAACCGAGCCGATGAGCCCGCCTCCGCCTCCAGCGAACCTAACG 685
|| |||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 541 ACCAAAGTGTTAAATGCAACAGAGCCGATAAGCCCGCCTCCGCCTCCAGCGAACCTAACC 600
Query 686 GATAGTCAGGATAGTGGAAAGCTACCGGCTAACATGGCACCGCCTCCAAAGAGTTTGGAG 745
||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 601 GATAGCCAGGATAGTGGAAAGCTACCGGCTAAAATGGCGCCGCCTCCAAAAAGTTTGGAG 660
Query 746 AGTGGGAAAAATGAGACAG-AGCCAGGTAAGGAGAGTCCTCCTTTGGCTAAAGATCCTGC 804
||||| ||||||| ||| | | ||||||||||||||||| ||| |||||||||||||||
Sbjct 661 AGTGGAAAAAATGTGAC-GAATCCAGGTAAGGAGAGTCCGCCTCTGGCTAAAGATCCTGA 719
Query 805 TAAGG-GAAAGGATGATAAGGGGAGCTCAGAGTCTGCCAGTGTAGATACCTGTGTAGGAA 863
||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 TAAGGCG-AAGGATGATAAGGGGAGCTCAGAGTCTGCCAGTGTAGAGACCTGTGTAGGAA 778
Query 864 AGTCTAACATATGTAGAACTGAGAATTCATTGGTGGCGTGCACTTTGAGCATTGATAAAG 923
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 AGTCTAACATATGTAGAACTGAGAATTCATTGGTGGCTTGCACTTTGAGCATTGATAAAG 838
Query 924 G 924
|
Sbjct 839 G 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5