BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G51590.1

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485511 jgi|Araly1|485511|fgenesh2_kg.5__1503__AT3G51590.1         699    0.0  


> Ahg485511 jgi|Araly1|485511|fgenesh2_kg.5__1503__AT3G51590.1
Length=527

 Score =  699 bits (378),  Expect = 0.0
 Identities = 482/531 (91%), Gaps = 11/531 (2%)
 Strand=Plus/Plus

Query  19   aaaaTGGCGTTTACTCCGAAGATCATCACATGCCTCATTGTCCTTACGATCTACATGGCA  78
            |||||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct  1    AAAATGGCGTTTGCTCCAAAGATCATCACATGCCTCATCGTCCTTACGATTTACATGGCA  60

Query  79   TCCCCAACAGAGTCAACCATCCAGTGTGGGACAGTGACGAGCACACTGGCACAGTGCCTG  138
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | 
Sbjct  61   TCCCCAACAGAGTCAACCATCCAGTGTGGGACAGTGACAAGCACACTGGCACAGTGCGTA  120

Query  139  ACCTACTTGACCAACAGTGGTCCATTGCCATCACAATGCTGCGTGGGAGTCAAGTCATTG  198
            |  ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct  121  AATTACTTGACCAACAGTGGTCCACTGCCATCAGAATGCTGCGTGGGAGTCAAATCATTG  180

Query  199  TACCAATTGGCTCAGACCACACCGGACCGTAAACAAGTATGTGAGTGCCTTAAA-CTAGC  257
            |||||| |||||||||||||||||||||| |||||||||||||||||||||||| | | |
Sbjct  181  TACCAAATGGCTCAGACCACACCGGACCGCAAACAAGTATGTGAGTGCCTTAAAGCAA-C  239

Query  258  GGGTAAAGAAATCAAGGGCCTCAACACCGACCTTGTGGCCGCACTTCCTACCACTTGTGG  317
            |||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||
Sbjct  240  GGGTAAAGAAATCAAGGGGCTAAATACCGACCTTGTGGCCTCACTTCCTACCACTTGTGG  299

Query  318  TGTTTCAATTCCCTACCCCATCAGTTTTAGCACCAATTGCGACAGTATATCGACTGCCGT  377
            ||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct  300  TGTTTCAGTTCCCTACCCCATCAGTTTCAGCACTAATTGTGACAGTATATCGACTGCCGT  359

Query  378  GTGAAAGAGGCTAGTGAT-CAGATGTAC--GACTAATCAAACTTGCCAGCTTTTAACCTA  434
            ||||||||| |||| | | | ||| ||   |||| |||||| |||||||||||||||| |
Sbjct  360  GTGAAAGAG-CTAG-GCTACTGAT-TAGATGACTTATCAAAGTTGCCAGCTTTTAACCCA  416

Query  435  ATTAAATAAAAGTATTCTGCT-T-ATATTTCCCATTTTATGATTTT-ATCTTCTTATCTA  491
            |||||||||||||||| |||| | |||||||||||||| ||||||| || ||| ||||||
Sbjct  417  ATTAAATAAAAGTATTTTGCTGTTATATTTCCCATTTTGTGATTTTCATTTTCCTATCTA  476

Query  492  TGTAACCACACGATTTCATATGCTAATAATGACAACGGATCTTTCTCTCTC  542
            ||||| || || |||||||||||||||||||||||||||||| || |||||
Sbjct  477  TGTAATCAAACCATTTCATATGCTAATAATGACAACGGATCTCTCACTCTC  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19840906280


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5