BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51610.1 Length=955 Score E Sequences producing significant alignments: (Bits) Value Ahg938022 jgi|Araly1|938022|scaffold_502213.1 1114 0.0 Ahg915793 jgi|Araly1|915793|Al_scaffold_0008_544 372 3e-102 Ahg911120 jgi|Araly1|911120|Al_scaffold_0001_1374 372 3e-102 > Ahg938022 jgi|Araly1|938022|scaffold_502213.1 Length=733 Score = 1114 bits (603), Expect = 0.0 Identities = 690/733 (94%), Gaps = 1/733 (0%) Strand=Plus/Plus Query 81 TCGCCAACGAAGCGGAGTTATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAA 140 ||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2 TCGCCGACAAAGCAAAGTTATGGCGGGCATGGCTGCGGTGGCAGGATCACGACCGTGGAA 61 Query 141 CGCTTTTATTCAAGCTCTAGTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTA 200 ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 62 CGCTTTTATTCAAGCTCTAGTTCTGATATCTCTATCATTTCCCGCTATCTCCAGCGCTTA 121 Query 201 CCGACCTGGAGATATCGTCCGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAACGAC 260 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 122 CCGACCTGGAGATATCGTCCGGATGAGCAAGATGGGGCAATATCACTCTTCGAGAACCAC 181 Query 261 TTGGCATGATGTGATCGGAAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGAT 320 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 182 TTGGCATGATGTGATCGGAAAACATTGCCCGATCTTCGCCGTTAATCGCGAGGTGTTGAT 241 Query 321 CCCAATAGCGAAACCAATTGGCTACACAGGAACTGATCCTTATAAGATAAAATTCCAAGT 380 ||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| Sbjct 242 CCCCATAGCGAAACCAATTGGCTACACAGGAACTGATGCATATAAAATAAAATTCCAAGT 301 Query 381 TGGAAGTGAGAAATTTCTGATTCACTGGCTTTTGGTAATTAATCGTAAGAGCTCAGAAGT 440 |||||||||||||| ||| ||||| |||||||||||||| || ||||||||||||||||| Sbjct 302 TGGAAGTGAGAAATATCTAATTCATTGGCTTTTGGTAATAAACCGTAAGAGCTCAGAAGT 361 Query 441 TCCGATGATCGATGTAAATTTGAGATATTCTGGAGGAGATCTGCTTGGAGTCACAGCTCA 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 362 TCCGATGATCGATGTAAATTTGAGATATTCTGGAGGAGATCTGCTTGGAGTCACAGCTGA 421 Query 501 AGTTATCGACATGCCTCATAGCTATCTGAATACACACCCGGAGATCCGCAAACAGTTTTG 560 |||| | || ||||||||||||||||| |||||||||||||||||||| || ||||| || Sbjct 422 AGTTGTTGATATGCCTCATAGCTATCTAAATACACACCCGGAGATCCGTAAGCAGTTCTG 481 Query 561 GGATCCTCAACACTGGCCAAAACATGTTCTTGTTAGATACACATGGAAGGAGCAGTCAGA 620 ||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 482 GGATCCTGAACAATGGCCAAAACATGTTCTAGTTAGATACACATGGAAGGAGCAGTCAGA 541 Query 621 GATTGATGTATCCTCAGGATTCTATGTCCTGTTTGGCTCAGCTCTCACATTTTCTTTTGT 680 ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| | Sbjct 542 GATTGATGTATCCTCGGGATTTTATGTCCTCTTTGGCTCAGCTCTCACATTTTCTTTCAT 601 Query 681 ACTCTCCATTTACGTCTTACAATCGTCACGAGAGAAGCTGGCAAGGTTTGTAAGAGAGAC 740 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 602 ACTCTCCATTTACGTCTTACAATCTTCACGAGAGAAGCTGGCGAGGTTTGTAAGAGAGAC 661 Query 741 GGTGGTGGAGAGCAGCAGCATGAATGTTGGAGAATTTGGCAAGGGGGATTGAGTCACATA 800 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 662 GGTGGTGGAGAGCAGCAGCACGAATGTTGGAGAATTTGGCAAGGCGGATTGAGTCA-ATA 720 Query 801 GTCAAGTATATGT 813 | ||||||||||| Sbjct 721 GACAAGTATATGT 733 > Ahg915793 jgi|Araly1|915793|Al_scaffold_0008_544 Length=252 Score = 372 bits (201), Expect = 3e-102 Identities = 234/250 (94%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 100 ATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAACGCTTTTATTCAAGCTCTA 159 ||||| | | |||||||||||||||||| |||||||||||| ||||||||||||||| || Sbjct 1 ATGGCAGTCCTGGCTGCGGTGGCAGGATCACGACCGTGGAATGCTTTTATTCAAGCTTTA 60 Query 160 GTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTACCGACCTGGAGATATCGTC 219 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 61 TTTCTGATATCTCTATCATTTCCCATTCCCTCCAGCGCTTACCGACCTGGAGATATCGTC 120 Query 220 CGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAA-CGACTTGGCATGATGTGATCGG 278 |||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| Sbjct 121 CGGATGAGCAAGATGGGGCAATATCACTCTTCGAGAATC-ACTTGGCATGATGTGATCGG 179 Query 279 AAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGATCCCAATAGCGAAACCAAT 338 ||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 180 AAAACATTGCCCGATCTTCGCCGTTAATCGCGAGGTTTTGATCCCCATAGCGAAACCAAT 239 Query 339 TGGCTACACA 348 |||||||||| Sbjct 240 TGGCTACACA 249 > Ahg911120 jgi|Araly1|911120|Al_scaffold_0001_1374 Length=252 Score = 372 bits (201), Expect = 3e-102 Identities = 234/250 (94%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 100 ATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAACGCTTTTATTCAAGCTCTA 159 ||||| | | |||||||||||||||||| |||||||||||| ||||||||||||||| || Sbjct 1 ATGGCAGTCCTGGCTGCGGTGGCAGGATCACGACCGTGGAATGCTTTTATTCAAGCTTTA 60 Query 160 GTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTACCGACCTGGAGATATCGTC 219 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 61 TTTCTGATATCTCTATCATTTCCCATTCCCTCCAGCGCTTACCGACCTGGAGATATCGTC 120 Query 220 CGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAA-CGACTTGGCATGATGTGATCGG 278 |||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| Sbjct 121 CGGATGAGCAAGATGGGGCAATATCACTCTTCGAGAATC-ACTTGGCATGATGTGATCGG 179 Query 279 AAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGATCCCAATAGCGAAACCAAT 338 ||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 180 AAAACATTGCCCGATCTTCGCCGTTAATCGCGAGGTTTTGATCCCCATAGCGAAACCAAT 239 Query 339 TGGCTACACA 348 |||||||||| Sbjct 240 TGGCTACACA 249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35454312810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5