BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51610.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938022 jgi|Araly1|938022|scaffold_502213.1 1114 0.0
Ahg915793 jgi|Araly1|915793|Al_scaffold_0008_544 372 3e-102
Ahg911120 jgi|Araly1|911120|Al_scaffold_0001_1374 372 3e-102
> Ahg938022 jgi|Araly1|938022|scaffold_502213.1
Length=733
Score = 1114 bits (603), Expect = 0.0
Identities = 690/733 (94%), Gaps = 1/733 (0%)
Strand=Plus/Plus
Query 81 TCGCCAACGAAGCGGAGTTATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAA 140
||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2 TCGCCGACAAAGCAAAGTTATGGCGGGCATGGCTGCGGTGGCAGGATCACGACCGTGGAA 61
Query 141 CGCTTTTATTCAAGCTCTAGTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTA 200
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 62 CGCTTTTATTCAAGCTCTAGTTCTGATATCTCTATCATTTCCCGCTATCTCCAGCGCTTA 121
Query 201 CCGACCTGGAGATATCGTCCGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAACGAC 260
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 122 CCGACCTGGAGATATCGTCCGGATGAGCAAGATGGGGCAATATCACTCTTCGAGAACCAC 181
Query 261 TTGGCATGATGTGATCGGAAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGAT 320
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 182 TTGGCATGATGTGATCGGAAAACATTGCCCGATCTTCGCCGTTAATCGCGAGGTGTTGAT 241
Query 321 CCCAATAGCGAAACCAATTGGCTACACAGGAACTGATCCTTATAAGATAAAATTCCAAGT 380
||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 242 CCCCATAGCGAAACCAATTGGCTACACAGGAACTGATGCATATAAAATAAAATTCCAAGT 301
Query 381 TGGAAGTGAGAAATTTCTGATTCACTGGCTTTTGGTAATTAATCGTAAGAGCTCAGAAGT 440
|||||||||||||| ||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct 302 TGGAAGTGAGAAATATCTAATTCATTGGCTTTTGGTAATAAACCGTAAGAGCTCAGAAGT 361
Query 441 TCCGATGATCGATGTAAATTTGAGATATTCTGGAGGAGATCTGCTTGGAGTCACAGCTCA 500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 362 TCCGATGATCGATGTAAATTTGAGATATTCTGGAGGAGATCTGCTTGGAGTCACAGCTGA 421
Query 501 AGTTATCGACATGCCTCATAGCTATCTGAATACACACCCGGAGATCCGCAAACAGTTTTG 560
|||| | || ||||||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 422 AGTTGTTGATATGCCTCATAGCTATCTAAATACACACCCGGAGATCCGTAAGCAGTTCTG 481
Query 561 GGATCCTCAACACTGGCCAAAACATGTTCTTGTTAGATACACATGGAAGGAGCAGTCAGA 620
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 482 GGATCCTGAACAATGGCCAAAACATGTTCTAGTTAGATACACATGGAAGGAGCAGTCAGA 541
Query 621 GATTGATGTATCCTCAGGATTCTATGTCCTGTTTGGCTCAGCTCTCACATTTTCTTTTGT 680
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 542 GATTGATGTATCCTCGGGATTTTATGTCCTCTTTGGCTCAGCTCTCACATTTTCTTTCAT 601
Query 681 ACTCTCCATTTACGTCTTACAATCGTCACGAGAGAAGCTGGCAAGGTTTGTAAGAGAGAC 740
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 602 ACTCTCCATTTACGTCTTACAATCTTCACGAGAGAAGCTGGCGAGGTTTGTAAGAGAGAC 661
Query 741 GGTGGTGGAGAGCAGCAGCATGAATGTTGGAGAATTTGGCAAGGGGGATTGAGTCACATA 800
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 662 GGTGGTGGAGAGCAGCAGCACGAATGTTGGAGAATTTGGCAAGGCGGATTGAGTCA-ATA 720
Query 801 GTCAAGTATATGT 813
| |||||||||||
Sbjct 721 GACAAGTATATGT 733
> Ahg915793 jgi|Araly1|915793|Al_scaffold_0008_544
Length=252
Score = 372 bits (201), Expect = 3e-102
Identities = 234/250 (94%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 100 ATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAACGCTTTTATTCAAGCTCTA 159
||||| | | |||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 1 ATGGCAGTCCTGGCTGCGGTGGCAGGATCACGACCGTGGAATGCTTTTATTCAAGCTTTA 60
Query 160 GTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTACCGACCTGGAGATATCGTC 219
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 61 TTTCTGATATCTCTATCATTTCCCATTCCCTCCAGCGCTTACCGACCTGGAGATATCGTC 120
Query 220 CGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAA-CGACTTGGCATGATGTGATCGG 278
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 121 CGGATGAGCAAGATGGGGCAATATCACTCTTCGAGAATC-ACTTGGCATGATGTGATCGG 179
Query 279 AAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGATCCCAATAGCGAAACCAAT 338
||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 180 AAAACATTGCCCGATCTTCGCCGTTAATCGCGAGGTTTTGATCCCCATAGCGAAACCAAT 239
Query 339 TGGCTACACA 348
||||||||||
Sbjct 240 TGGCTACACA 249
> Ahg911120 jgi|Araly1|911120|Al_scaffold_0001_1374
Length=252
Score = 372 bits (201), Expect = 3e-102
Identities = 234/250 (94%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 100 ATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAACGCTTTTATTCAAGCTCTA 159
||||| | | |||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 1 ATGGCAGTCCTGGCTGCGGTGGCAGGATCACGACCGTGGAATGCTTTTATTCAAGCTTTA 60
Query 160 GTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTACCGACCTGGAGATATCGTC 219
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 61 TTTCTGATATCTCTATCATTTCCCATTCCCTCCAGCGCTTACCGACCTGGAGATATCGTC 120
Query 220 CGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAA-CGACTTGGCATGATGTGATCGG 278
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 121 CGGATGAGCAAGATGGGGCAATATCACTCTTCGAGAATC-ACTTGGCATGATGTGATCGG 179
Query 279 AAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGATCCCAATAGCGAAACCAAT 338
||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 180 AAAACATTGCCCGATCTTCGCCGTTAATCGCGAGGTTTTGATCCCCATAGCGAAACCAAT 239
Query 339 TGGCTACACA 348
||||||||||
Sbjct 240 TGGCTACACA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5