BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51632.1
Length=2499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485516 jgi|Araly1|485516|fgenesh2_kg.5__1508__AT3G51630.1 3145 0.0
> Ahg485516 jgi|Araly1|485516|fgenesh2_kg.5__1508__AT3G51630.1
Length=2338
Score = 3145 bits (1703), Expect = 0.0
Identities = 1994/2130 (94%), Gaps = 38/2130 (2%)
Strand=Plus/Plus
Query 316 CAGATGATTGCG--A-AAGAGCAAGACGAATACAAATTACGCCAACAAGGTCTTGTTTTT 372
|||||||||||| | ||||||| |||||||||||| ||||| |||||||||||||| ||
Sbjct 232 CAGATGATTGCGAAAGAAGAGCAGGACGAATACAAAATACGCAAACAAGGTCTTGTTGTT 291
Query 373 CAAATGGCTTCTCTTTTC-CTCT-CTTTCGATTACTCCTTACTCTTCTTTTGGTTGCTCT 430
|||||||||||| || | |||| |||| |||| ||| |||||| |||||||||||||
Sbjct 292 GAAATGGCTTCTC-TTACGCTCTGTTTTC-ATTATTCCAGACTCTTTTTTTGGTTGCTCT 349
Query 431 TCCGCGTTTTCTTATACGAGAATCACGAACGAAAACTCCAGATTTTCTAGCA---CACCT 487
|||||||||||| ||||||||||||||| |||||| | ||||||||||||| | |||
Sbjct 350 TCCGCGTTTTCTCCTACGAGAATCACGAAGGAAAACACAAGATTTTCTAGCACTTCTCCT 409
Query 488 CTTCTCTCTGCATCGCCATCTTGttttttcccccaaattttcgattttttttttGTATAA 547
|||||||||||||||| ||||||||||||||||||||||||||| || | |
Sbjct 410 CTTCTCTCTGCATCGCGATCTTGTTTTTTCCCCCAAATTTTCGA--------TT-T-T-- 457
Query 548 CTTTTGAGATTCTGATAGATCCGGTACGGAGTCATGTATATGGAGATTTCTTCTGCTTCC 607
|||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 458 -TTTT----TT-TGATAGATCCGGTACGGAGCCATGTATATGGAGATCTCTTCTGCTTCC 511
Query 608 GATGATTCGATCGCTTACGTTGAGACAGATCCTTCTGGTCGCTACGGACGTTTCAGAGAA 667
|||||||||||| | |||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 512 GATGATTCGATCCCATACGTTGAGACAGATCCTTCCGGTCGCTATGGACGTTTTAGAGAA 571
Query 668 GTACTTGGCAAAGGGGCGATGAAGACGGTTTATAAAGCATTTGACCAGGTTTTAGGAATG 727
|| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 572 GTGCTTGGTAAAGGGGCGATGAAGACGGTTTACAAAGCATTTGACCAGGTTCTAGGAATG 631
Query 728 GAAGTTGCTTGGAATCAAGTTAAGCTCAATGAGGTTTTCCGATCACCTGAGCCTTTACAA 787
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GAAGTCGCTTGGAATCAAGTTAAGCTCAATGAGGTTTTCCGATCACCTGAGCCTTTACAA 691
Query 788 CGCCTCTACTCTGAGGTTCATCTCCTCAAGAATCTCAATCACGAATCCATTATTCGTTAC 847
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 692 CGCCTTTACTCTGAGGTTCATCTTCTCAAGAATCTCAATCACGAATCCATTATTCGCTAC 751
Query 848 TGCACGTCTTGGATCGATGTCAACCGCAGAACATTCAACTTCATTACTGAGCTGTTTACA 907
||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||
Sbjct 752 TGCACGTCTTGGATCGATGTCAACCGCAGAACATTTAACTTCATCACTGAGCTCTTCACA 811
Query 908 TCAGGCACCCTTAGAGAGTATAGAAGGAAGTATCAAAAGGTTGATATCCGGGCAATCAAG 967
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 812 TCAGGCACCCTTAGAGAGTATCGAAGGAAGTATCAAAAGGTTGATATCCGGGCAATCAAG 871
Query 968 AGCTGGGCACGTCAGATCTTGAATGGTCTTGCTTATCTCCATGGACATGATCCTCCTGTC 1027
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 872 AGCTGGGCACGCCAGATCTTGAATGGTCTTGCTTACCTCCATGGACATGATCCTCCTGTC 931
Query 1028 ATTCACAGAGACCTCAAATGCGATAATATCTTCGTTAATGGACACCTTGGGCAAGTTAAG 1087
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 932 ATTCACAGAGACCTCAAATGCGATAATATCTTCGTTAACGGCCACCTTGGGCAAGTCAAG 991
Query 1088 ATTGGTGACCTGGGCTTAGCTGCAATTCTTCGTGGATCACAGAATGCGCACAGCGTCATA 1147
|||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||||||||
Sbjct 992 ATTGGTGACCTGGGCTTAGCCGCAATACTCCGTGGATCACAAAATGCACACAGCGTCATA 1051
Query 1148 GGAACGCCTGAATTTATGGCACCAGAGCTATATGAAGAAGATTACAACGAGCTTGTAGAC 1207
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1052 GGAACGCCTGAATTTATGGCACCCGAGCTATATGAAGAAGATTACAACGAGCTTGTGGAC 1111
Query 1208 ATTTATTCGTTTGGTATGTGTGTCCTAGAGATGCTTACCGGTGAGTATCCTTATAGTGAA 1267
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1112 ATTTATTCGTTTGGAATGTGTGTCCTAGAGATGCTCACCGGTGAGTATCCATATAGTGAA 1171
Query 1268 TGCACCAACCCTGCCCAAATATACAAGAAAGTTACATCGGGGAAGTTGCCTGACTCATTC 1327
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1172 TGCACCAACCCTGCCCAAATATACAAGAAAGTTACATCGGGGAAGTTGCCTGACTCTTTC 1231
Query 1328 CATCTAATCCAACACACGGAGGCCCAACGTTTTGTTGGTAAATGCTTGGAAACTGTGTCA 1387
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1232 CATCTAATCCAACACACGGAGGCCCAACGTTTTGTTGGTAAATGCCTGGAAACTGTGTCA 1291
Query 1388 AGAAGATTGCCTGCAAAGGAGCTCTTAGCGGACCCATTCCTTGCCGCAACTGATGAGAGA 1447
||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 1292 AGACGATTGCCTGCAAAGGAGCTCTTGGGGGACCCATTCCTTGCCGCAACTGATGAGAAA 1351
Query 1448 GATTTGGCGCCTCTTTTTAGATTGCCGCAACAATTGGCAATCCAGAATTTGGCTGCAAAT 1507
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GATTTGGCACCTCTTTCTAGATTGCCGCAACAATTGGCAATCCAGAATTTGGCTGCAAAT 1411
Query 1508 GGAACGGTGGTAGAGCATCTGCCGTCAACGACTGATCCAACTAGAACAACAGATATGTCA 1567
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GGAACGGTGGTACAACATCTGCCGTCAACGACTGATCCAACTAGAACAACAGATATGTCA 1471
Query 1568 ATAACAGGAAAGATGAACTCAGAAGACCACACCATCTTCCTTCAAGTACAGATTCTAGAT 1627
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1472 ATAACAGGAAAGATGAACTCAGAAGACCACACCATCTTTCTTCAAGTACAGATTTTAGAT 1531
Query 1628 GGCGATGGTCACATGAGGAACATTCAGTTCCCGTTCAACATTTTAAGTGACACACCTCTA 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GGCGATGGTCACATGAGGAACATTCAGTTCCCGTTCAACATTTTAAGTGACACACCTCTA 1591
Query 1688 GAAGTAGCTTTGGAGATGGTGAAGGAGCTTGAGATCACTGATTGGGATCCTTTGGAGATC 1747
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1592 GAAGTAGCTTTGGAGATGGTGAAAGAGCTTGAGATCGCTGATTGGGATCCTTTGGAGATC 1651
Query 1748 GCTGCAATGATAGAAAATGAGATATCTTTGCTCGTCCCCAACTGGAGGGCCAATGACTCT 1807
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1652 GCTGCAATGATAGAAAATGAGATATCTTTGCTCGTCCCTAACTGGAGGGCCAATGACTCT 1711
Query 1808 TCTATCCGGCACGAAAGCTTTGGTCATGAAGATGATGAGGACAATGGCGACA-CAGAGGG 1866
|||||||||||| || ||||||||||||||||||||||||||||||| || | |||||||
Sbjct 1712 TCTATCCGGCACCAAGGCTTTGGTCATGAAGATGATGAGGACAATGGTGA-AGCAGAGGG 1770
Query 1867 AAGAACGCGCCTTTTCTCCTCTGCTTCTTCCTCTCACGACTCTCCTGTAGCAGTTAGAGA 1926
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1771 AAGAACGCGCCTTTTCTCCTCTGCTTCTTCCTCTCACGACTCTCATGTAGCAGTTAGAGA 1830
Query 1927 GAACAATGACGATTCTAGTAACGATGTGATCCCAGATATGGATGATGGCAATAGAAGCTC 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 GAACAATGACGATTCTAGTAACGATGTGATCCCAGATATGGATGATGGCAATAGAAGCTC 1890
Query 1987 TAACAGGTTGCTGAATTCTTCAACATACCACTACTCACCTGCCATTGATGATGATCAAAA 2046
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 TAACAGGTTGTTGAATTCTTCAACATACCACTACTCACCTGCCATTGATGATGATCAAAG 1950
Query 2047 TCAGCAACAACGGAGACGAGTAAGGCTACAACAGAAAATGAGATCGCTGGTGGACACGAG 2106
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1951 TCAGCAACAGCGGAGACGAGTAAGGCTACAACAGAAAATGAGATCTCTGGTGGACACAAG 2010
Query 2107 AACACAGGTGCTACACCGATCGCTCATGGAGTTGATCAACAAGCGTCGTGGGCGTGGCTT 2166
||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2011 AACGCAGGTGCTACACCGTTCGCTCATGGAGTTAATCAACAAGCGCCGTGGGCGTGGCTT 2070
Query 2167 TGACCCGAACACAAACGAGCTACAACCTCAACCGTCGTCCACTGATTTCATTCGACGATG 2226
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 CAACCCGAATGCGAACGAGCTACAACCTCAACCGTCGTCCACTGATTTCATTCGACGATG 2130
Query 2227 TTGAAAATAGTATGATGAGAGAG----CCTATTTGTGACTCTTTCATGATAAAGACAGAT 2282
|||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 2131 TTGATAATAGGATGATGAGAGAGAGAGCCT-TTTGTGGCTCTTTCATGATAAAGACAGAT 2189
Query 2283 CTTCATATTGGTACTAGCATTTTGATTTGATGATACTATATGAAATAATTGTTT-AGAGT 2341
||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 2190 CTTCATATTGGTACTAGCATTTTGATTTGTTGATATTATATGAAATAATTGTTTTAGAGT 2249
Query 2342 GCTTTGTATATATGATATTCTTAGGGAAGTGTT-ACCTTTTTAGCTCTATCTCGATTTGA 2400
|||||||||||||||||||||||||||||||| | ||||| ||||| |||||||| |||
Sbjct 2250 CCTTTGTATATATGATATTCTTAGGGAAGTGTTTATCTTTT-AGCTCGATCTCGATCTGA 2308
Query 2401 AAGCGATGCAAAACCGCTCGAATTCGATTT 2430
||||||||||||| ||| | ||||||||||
Sbjct 2309 AAGCGATGCAAAATCGCACAAATTCGATTT 2338
Score = 283 bits (153), Expect = 4e-75
Identities = 219/247 (89%), Gaps = 20/247 (8%)
Strand=Plus/Plus
Query 32 TTTTTGGGAATCAGAATCATCATCGATGGTGAATCCAAAGCGTGGCAATAGGTTTTTCAA 91
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TTTTTGGGAATCAGAATCATCATCGATGGTGAATACAAAGCGTGGCAATAGGTTTTTCAA 60
Query 92 ATACAGAATTGTGTAAATTGCTCTCTATCTTCTTCTCTTTCAAATTCTCTTCCTTTTGTT 151
|| ||||| || ||||||||| || || | || ||||||||||||||||| ||
Sbjct 61 ATTCAGAA--ATG----TTGCTCTCT-TC-TC-T-TC---CAAATTCTCTTCCTTTTTTT 107
Query 152 GTATTCAATAACTTTTTCCCCACTTTGATGGGCTGCAACCACATATTCTTCTTCTATCTT 211
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 108 ATTTTCAATAACTTTTTCCCCACTTTGATGGGCTGCAACCACATATTCTTCT---ATCTT 164
Query 212 TAACTTTTCCCACCAAACTTCT-CCttttttttctttt-ttt-tt-GGGTTCTGGGTCTG 267
|||||||||||||||||||| | |||||||||| |||| ||| || ||||||||||||||
Sbjct 165 TAACTTTTCCCACCAAACTTGTTCCTTTTTTTTTTTTTGTTTGTTTGGGTTCTGGGTCTG 224
Query 268 CTTTTtt 274
|||||||
Sbjct 225 CTTTTTT 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94197175885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5