BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51640.1
Length=3108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323716 jgi|Araly1|323716|fgenesh1_pm.C_scaffold_5001260 3687 0.0
Ahg345632 jgi|Araly1|345632|fgenesh1_pg.C_scaffold_4001974 1027 0.0
> Ahg323716 jgi|Araly1|323716|fgenesh1_pm.C_scaffold_5001260
Length=2454
Score = 3687 bits (1996), Expect = 0.0
Identities = 2333/2490 (94%), Gaps = 45/2490 (2%)
Strand=Plus/Plus
Query 441 ATGCTACCTTGGTTTGTCATACCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCA 500
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTGCCTTGGTTTGTCATTCCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCA 60
Query 501 CCAGCTTTTCGTTTTGAGATTACTTCTCCCAGGCTTGCTTGTGTATTTGTGCTCTTGGTT 560
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 CCAGCTTTTCGTTTTGAGATTACTTCTCCAAGGCTTGCTTGTGTGTTTGTGCTCTTGGTT 120
Query 561 ACTTTGTTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGGGTACGTAGAAAT 620
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 121 ACTTTGTTCTGGTACGAGGTTTTGATGCCTCAGCTGTCTACTTGGAGGGTACGTAGAAAT 180
Query 621 GCCCAACTTAGGGAGAGAGAAAGATTAGAAGCTATTGAATTGCAAAAGTTGAAGAAAAAT 680
|||||||| ||||||||||| |||||||||||||||||| |||||||| | |||||||||
Sbjct 181 GCCCAACTCAGGGAGAGAGAGAGATTAGAAGCTATTGAACTGCAAAAGCTAAAGAAAAAT 240
Query 681 GCCACAAGGCGTTGTCGGAACTGCTCAA-ATCCTTACAGGGACCAAAATCC-TGGTGGTG 738
|| |||||||||||||| |||||||||| | |||||||||||||||||||| | ||||||
Sbjct 241 GCGACAAGGCGTTGTCGTAACTGCTCAACA-CCTTACAGGGACCAAAATCCAT-GTGGTG 298
Query 739 GCAAATTTATGTGTTCGTATTGTGGACATGTATCTAAACGGCCTGTTTTAGACATGGCCT 798
| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 299 GGAAATTTATGTGTTCGTATTGTGGGCATGTATCAAAACGCCCTGTTTTAGACATGGCCT 358
Query 799 TGTCTTCCGGATTAGAGATTTCTGGTTCAGGGATTTTGAAGGATCTTGTTGGAAGAGGTG 858
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 359 TGTCTTCCGGATTAGAGATTTCTGGTTCAGGGATTTTGAAGGATCTTGTTGGAAAAAGTG 418
Query 859 GAAAGATGTTGAATGGGAAGGGATGGAGTGAGAATGGATATTTGCACAGGCAAGAGTGGT 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAAGATGTTGAATGGGAAGGGATGGAGTGAGAATGGATATTTGCACAGGCAAGAGTGGT 478
Query 919 CTGACAACAGCACATGGACTAGCGGGTCAAGCTATTGGCGGAATAATAGTGGCGATACGT 978
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
Sbjct 479 CTGACAGCAGCACATGGAATAGCGGGTCAAGCTATTGGCGGAATAATAGTGGTGGTACAT 538
Query 979 TTGAAGGAGATGAAAATTGTTTGGTGGAGAAATCATATTCTGGTGGTGTTGTTTTTGCTT 1038
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 539 TTGAAGGAGATGAAAATTGTTTGGTGGAAAAATCATACTCTGGTGGTGTTGTTTTTGCTT 598
Query 1039 GCAGGTTGCTGACTTCTTTTTTCATGAGCATTTTGTGGCTTTGGAGAAAGATATTTAGAT 1098
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 GCAGGTTGCTGACTTCTTTTTTCATGAGCATTTTGTGGCTTTGGAAAAAGATATTTAGAT 658
Query 1099 TTAGCTCATCAGTTGGTGATTCATCACTTGACCCTGAGCAGAGGCGGATG-TTGGCTAGG 1157
|||||||||||| || |||||| |||||||||||||||||||||||| || | || ||||
Sbjct 659 TTAGCTCATCAGCTGATGATTCGTCACTTGACCCTGAGCAGAGGCGGTTGCTAGG-TAGG 717
Query 1158 CAGGGTGAGAACGGGACAAGCTGTCATGAAAGTAGGGTAGAAAAGGCACGTagaaaagca 1217
||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 718 CAGGGTGAGAACGGGACCAGCTATCATGAAAGTAGGGTAGAAAAAGCACGTAGAAAAGCA 777
Query 1218 gaggagaaaagacaagctaggctagagaaggagcattcagaggaggaagagagaaaacaa 1277
|||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||
Sbjct 778 GAGGAGAAAAGACAAGCTAGGCTAGAAAAAGAGCTTTCAGAGGAGGAAGAAAGAAAACAA 837
Query 1278 agagaggAAGTAGCAAGACTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGATACTTGAG 1337
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGAGAAGAAGTCGCAAGACTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGATACTTGAG 897
Query 1338 GCCGAGAAATGCAGCAAATTATCAGTGGCTGCTaaggagaaggacactaaggaggcagaa 1397
|||||||||||||||||||||||||| | ||| | ||||||||||||||
Sbjct 898 GCCGAGAAATGCAGCAAATTATCAGT-G--GCT---------G---CTAAGGAGGCAGAA 942
Query 1398 aagaagcgtcaggagagaagaaaagagagagaTAGGGCCTCAAGTAAGAGCAATTCTGAT 1457
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 AAGAAGCGTCAGCAGAGAAGAAAAGAGAGAGATAGGGCCTCAAGTAAGAGCAATTCTGAT 1002
Query 1458 GGTGAAGAGGTTGACAAGAGAACAAGAAAGGAAACCGAGCAGAAGCGTGGGCTTTATAAG 1517
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1003 GGTGAAGAGGTTGACAAGAGAACAAGAAAGGAAACTGAGCAGAAGCGTGGGCTTAATAAG 1062
Query 1518 AGTGATCATCTGGAACAGGAGAGGCACGCACCTGATAATTTAAGGGTCCCCAACATGGAA 1577
|| |||||||| ||| | |||||||||||||||||||||| || ||||||||||
Sbjct 1063 AGCGATCATCT------GGA-A--CACGCACCTGATAATTTAAGGGGCCTCAACATGGAA 1113
Query 1578 AGGAGACATGGACATGGTTTAGAAAATAATGTCACCAGTAACGGTACAAAATCTGGTGGT 1637
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1114 AGGAGACATGGACATGGTTTAGAGAATAATGTCACTAGTAACGGTACAAAATCTGGTGGT 1173
Query 1638 AGGTACTTTGATCGAATGAAGGGTACATTTTTGTCTTCTTCAAAGGCTTTTACTGATAGT 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGGTACTTTGATCGAATGAAGGGTACATTTTTGTCTTCTTCAAAGGCTTTTACTGATAGT 1233
Query 1698 CGTTTATTTGGGAGAGGTGTTAATACTTCTGCTACAATTGCAAGAGAAAACAAGCCCATT 1757
||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 1234 CGTTTATTTGGGAGAGGTGTTTATACTTCTGCTACAGTTGCAAAAGAAAACAAGCCCATT 1293
Query 1758 GGTTCTGCAGATAATTCTCATACCTATGCTCATTCTAGTCATA-CTAATCCTCCTGAATT 1816
|||||||||||||||||||| |||||||||||||| | |||| | ||||||||||||||
Sbjct 1294 GGTTCTGCAGATAATTCTCACACCTATGCTCATTC--G-CATATC-AATCCTCCTGAATT 1349
Query 1817 CGTGGCTATGAAATATGTCCCTAATGAAGAGGAAAGGAACACTAATAATCCAGTTGTTTC 1876
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TGTGGCTATGAAATCTGTCCCTAATGAAGAGGAAAGGAACACTAATAATCCAGTTGTTTC 1409
Query 1877 TGAGCCAAAACCGAGTAGAGAACCTAAAAAATCATGGCACCAACTGTTTGCTCGTTCAAC 1936
|||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1410 TGAGCCAACGCCGAGTAGAGAACTTAGAAAATCATGGCACCAACTGTTTGCCCGTTCAAC 1469
Query 1937 TCCTGCTCCTGTTTCCTCAAATGTTAATACTATAAGTAGACCTAGCACGAATCCCCAGCC 1996
||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1470 TCCTGTTCCTGTTTCCTCGAATGTTAATACTATAAGTAGACCTAGTATGAATCCCCAGCC 1529
Query 1997 AAATGTTCAGAGCTCACAGGTTCCCAGTCAAGTTTCCTCAATACGAACCTTTGACAATCC 2056
|| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1530 AATTGTTCAGAGCTCACAGGTTACCAGTCAAGTTTCCTCAATACGAACCTTCGACAATCC 1589
Query 2057 CATCAGTTTTGGGCTCCCATCGCCATTCACCATACCGGTGTACTCTAGTGGATCCACTAC 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 CATCAGTTTTGGGCTCCCATCGCCATTCACCATACCGGTGTACTCTAGTGGATCCACTAC 1649
Query 2117 CAGTAGTTTAGGTTTCTCACCTCCAACAGA-ACTTGTTTTTCCTCAACCCGGTGAAGATG 2175
||||||| |||||||||||||||||||||| | ||||||||| ||||||||| |||||||
Sbjct 1650 CAGTAGTCTAGGTTTCTCACCTCCAACAGAGA-TTGTTTTTCATCAACCCGGAGAAGATG 1708
Query 2176 AGCGTTTTGAAGATCCATGTTATGTTCCGGATCCGATATCTCTACTGGGACCTGTTTCAG 2235
|||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1709 AGCGTTTTGAAGATCCTTGTTATGTTCCGGATCCAATATCTCTTCTGGGACCTGTTTCAG 1768
Query 2236 AATCACTTGATTTAAGAGCTGCTGGGTATGAAACTGGCATAGGACAGGTAAAATACCAGG 2295
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct 1769 AATCACTTGATTTAAGAGATGCTGGGTATGAAACTCGCATAGGACAGGTAAAATACCATG 1828
Query 2296 CGATGAAGAATACACCTTCTTGTGAAGCCAACAAGCCATCTCCAATTGAGTCTCCCTTGT 2355
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1829 CGATGAAGAATACACCTTCTTGTGAAGCCAACAAGCCGTCTCCAATTGAATCTCCCTTGT 1888
Query 2356 CTAGATCACGGGCTGCGGATGAAAAACAAGCTAATGATGGAAGCTGGCAAATGTGGAAGA 2415
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1889 CTAGATCACGGGCTGCGGATGAAAAGCAAGCTAATGATGGAAGCTGGCAAATGTGGAAGA 1948
Query 2416 GTCCTCTAGGCCAAAACGGTCTTGGTTTAGTTGGTGGGTCAGCAAACTGGGTTATACCTT 2475
|||| |||||||||||| |||| |||||||||||||| |||||||||||| |||||||||
Sbjct 1949 GTCCCCTAGGCCAAAACAGTCTCGGTTTAGTTGGTGGTTCAGCAAACTGGATTATACCTT 2008
Query 2476 CCGAAATAAGTAGATCTATCGAGGAAAGTGATATGCATCACGCGCCTCAGCATAGAACAG 2535
| |||| ||||||||||| |||||||| || |||||| || | ||||||||| |||||||
Sbjct 2009 CTGAAACAAGTAGATCTAACGAGGAAATTGCTATGCACCATGTGCCTCAGCACAGAACAG 2068
Query 2536 AATCATTATTTTCAAAAGAGGATTGCCAGCTTCATCAAGGTGCTTATTCACAAAGGAAGG 2595
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2069 AATCATTATTTTCAAAAGAGGATTGTCAGCTTCATCAAGGTGCTTATTCACAAAGGAAGG 2128
Query 2596 ACTATCTTGAACATGATCAGAGA-AGTGGCGTTTTCAGCCCCATTACTGGTCCAACCACT 2654
||| ||||||||||||||||||| | |||||||||||||||||| | |||||||||||||
Sbjct 2129 ACTGTCTTGAACATGATCAGAGAGA-TGGCGTTTTCAGCCCCATCAGTGGTCCAACCACT 2187
Query 2655 ACTGATCCTTGGTCTCAGAAAATGTTCTTCCCTGCATTATCTGGTATTGAGAGTCCTTTT 2714
|||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 2188 ACTGATCCTTGGTCACAGAAAATGTTCTTCCCTGCATTAACTGGCATTGAGAGTCCTTTT 2247
Query 2715 TCTA-CTACCACACAAACAAAAAGCGTCTTGAACAATGCGGCAGG-GTACAGAAGTCCAA 2772
||| | |||||||||||| ||||| |||||||||||| ||| || ||||||||||||||
Sbjct 2248 TCTTTC-ACCACACAAACAGAAAGCATCTTGAACAATGTGGC-GGCGTACAGAAGTCCAA 2305
Query 2773 CGGGATCTGGTTCAGACAATCCATTTGAACATCCTTCTCCTAATCACTGGCTCAAGAAGG 2832
| ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2306 CTGGATCTGCTCCAGACAATCCATTTGAACATCCGTCTCCTAATCACTGGCTCAAGAAGG 2365
Query 2833 TGAAGAGCTCAGGGAATGGGAGTGGGAAGCAAGTTT-TAGCGGCCGGTGAAGTTGAGAAC 2891
|||||||||||||| |||||| |||||||||| ||| | |||||||||||||||||||||
Sbjct 2366 TGAAGAGCTCAGGGGATGGGATTGGGAAGCAA-TTTGTGGCGGCCGGTGAAGTTGAGAAC 2424
Query 2892 CACCAAAAAGATGTAGAATCATTCTGGTAG 2921
||||||||||||||||||||||| ||||||
Sbjct 2425 CACCAAAAAGATGTAGAATCATTTTGGTAG 2454
> Ahg345632 jgi|Araly1|345632|fgenesh1_pg.C_scaffold_4001974
Length=2430
Score = 1027 bits (556), Expect = 0.0
Identities = 928/1103 (84%), Gaps = 43/1103 (4%)
Strand=Plus/Plus
Query 447 CCTTGGTTTGTCATACCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCACCAGCT 506
|||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 7 CCTTGGTTGGTCTTACCTTTGATTGGACTTTGGGCTCTGTCTCAGCTTCTTCCACCAGCT 66
Query 507 TTTCGTTTTGAGATTACTTCTCCCAGGCTTGCTTGTGTATTTGTGCTCTTGGTTACTTTG 566
||||||||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 67 TTTCGTTTTGAAATAACATCTCCGAGGCTAGCTTGTGTATTTGTGCTTTTGGTTACTTTG 126
Query 567 TTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGGGTACGTAGAAATGCCCA- 625
||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 127 TTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGTGTGCGGAGAAATGCT-AG 185
Query 626 ACTTAGGGAGAGAGAA-AGATTAGAAGCTATTGAATTGCAAAAG-TTGAAGAAAAATGCC 683
||||||||||||| || ||||| |||||||| ||| |||||||| || ||||||| |||
Sbjct 186 ACTTAGGGAGAGA-AAGAGATTGGAAGCTATGGAACTGCAAAAGCTT-AAGAAAACTGCT 243
Query 684 ACAAGGCGTTGTCGGAACTGCTCAAATCCTTACAGGGACCAAAATCCTGGTGGTGGCAAA 743
||| | ||||| || |||||||||| |||||| |||||||||||||||||||||| |||
Sbjct 244 ACACGACGTTGCCGTAACTGCTCAACGCCTTACCGGGACCAAAATCCTGGTGGTGGAAAA 303
Query 744 TTTATGTGTTCGTATTGTGGACATGTATCTAAACG-G-CCTGTTTTAGACATGGCCTTGT 801
|||||||| || |||||||| ||| |||| ||| | | ||||||||||||||| ||| ||
Sbjct 304 TTTATGTGCTCATATTGTGGGCATATATC-AAA-GAGACCTGTTTTAGACATG-CCT-GT 359
Query 802 -CTTCC-GGATTAGAGA-TTTCTGGTTCAGGGATTTTGAAGGATCTTGTTGGAAGAGGTG 858
| || || |||| || |||||||||| || || |||||||||||||| ||||||||||
Sbjct 360 TCCCCCAGGGTTAG-GACTTTCTGGTTCTGGAATATTGAAGGATCTTGTAGGAAGAGGTG 418
Query 859 GAAAGATGTTGAATGGGAAGGGATGGAGTGAGAATGGATATTTGCACAGGCAAGAGTGGT 918
| ||||| |||||||| |||||||||| ||||||||| | ||||| ||||||| ||||
Sbjct 419 GTAAGATTTTGAATGGAAAGGGATGGAATGAGAATGGTTGGATGCACGGGCAAGAATGGT 478
Query 919 CTGACAACAGCACATGGACTAGCGGGTCAAGC-TATTGGCGGAATAATAGTGGC-GATAC 976
| || ||||||||||||||||||| |||| || |||||||||||| ||||||| | |||
Sbjct 479 CAGAAAACAGCACATGGACTAGCGAGTCA-GCCTATTGGCGGAATCATAGTGGTAG-TAC 536
Query 977 GTTTGAAGGAGATGAAAATTGTTTGGTGGAGAAATCATATTCTGGTGGTGTTGTTTTTGC 1036
|||| | |||||| ||||| |||| ||| ||||||||| ||||||| |||||||||||
Sbjct 537 ATTTGGTGAAGATGAGAATTGCTTGGGGGAAAAATCATATCCTGGTGGCGTTGTTTTTGC 596
Query 1037 TTGCAGGTTGCT-GACTTCTTTTTTCATGAGCATTTTGTGGCTTTGGAGAAAGATATTTA 1095
|||| || |||| | |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 597 TTGCCGGCTGCTTG-CTTCTTTTTTCATGAGCATTAGGTGGCTTTGGAGAAAGATTTTTA 655
Query 1096 GATTTAGCTCATCAGTTGGTGATTCATCA-CTTGACCCTGAGCAGAGGCGGATGT--TGG 1152
| |||||||| || |||| ||| || ||| | || |||| ||||| || || | |||
Sbjct 656 GCTTTAGCTCTTCGGTTGATGAATCGTCAACC-GATGCTGACCAGAGACG-AT-TACTGG 712
Query 1153 CTAGGCAGGGTGAGAACGGGACAAGCTGTCATGAAAGTAGGGTAGA-AAAGGCACGTaga 1211
|||||||||||||||| ||||| |||| |||||| |||||||| || |||| |||| |||
Sbjct 713 CTAGGCAGGGTGAGAATGGGACCAGCTATCATGAGAGTAGGGTTGAGAAAG-CACGCAGA 771
Query 1212 aaagcagaggagaaaagacaagctaggctagagaaggagcattcagaggaggaagagaga 1271
||||| ||||||||||||||||||||||| || |||||||||| ||||| |||||||||
Sbjct 772 AAAGCCGAGGAGAAAAGACAAGCTAGGCTGGAAAAGGAGCATTTGGAGGAAGAAGAGAGA 831
Query 1272 aaacaaagagaggAAGTAGC-AAGACTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGAT 1330
|||||| |||||||||| || || |||||| ||||||||||||| | ||||||||||
Sbjct 832 AAACAACGAGAGGAAGTCGCGAA-ACTAGTGGAGGAACGGAGAAAATTAAGAGATGAGAA 890
Query 1331 -ACTTGAGGCCGAGAAATGCAGCAAATTATCAG-TGGCTGCTaaggagaaggacactaa- 1387
| |||| ||||||| |||||||||| |||| || || | || || || || |||||
Sbjct 891 GA-TTGAAGCCGAGAGATGCAGCAAAGCATCATCTG-CTTCCAAAGAAAAAGATACTAAA 948
Query 1388 -ggagg-cagaaaagaagcgtcaggagagaa-gaaaagagagagaTAGGGCCTCAAGTAA 1444
|| || |||| |||||| | |||||||||| |||| || |||||||| ||||| |||||
Sbjct 949 AGGGGGGCAGAGAAGAAGAGCCAGGAGAGAAAGAAA-GAAAGAGATAGAGCCTCTAGTAA 1007
Query 1445 GAGCAATTCTGATGGT-GAAGAGGTTGACAAGAGAACAAGAAAGGAAACCGAGCAGAAGC 1503
||||||||| |||| | |||||| |||| ||||||| | |||| || || || || ||||
Sbjct 1008 GAGCAATTCCGATG-TCGAAGAGCTTGATAAGAGAATAGGAAAAGATACTGACCATAAGC 1066
Query 1504 GTGGGCTTTATAAGAGTGATCAT 1526
||| |||| | || | |||||||
Sbjct 1067 GTGAGCTTGAGAAAAATGATCAT 1089
Score = 255 bits (138), Expect = 1e-66
Identities = 212/248 (85%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 2168 TGAAGATGAGCGTTTTGAAGATCCATGTTATGTTCCGGATCCGATATCTCTACTGGGACC 2227
|||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1728 TGAAGAAGAGCGTTTTGAAGATCCGTGTTATGTTCCGGATCCAATATCTCTTCTGGGACC 1787
Query 2228 TGTTTCAGAATCACTTGATTTAAGAGCTGCTGGGTATGAAACTGGCATAGGACAGGTAAA 2287
|||||||||||| |||||| |||| | ||||||| ||||||||| | ||| | |||
Sbjct 1788 TGTTTCAGAATCGCTTGATCTAAG-G--GCTGGGTTTGAAACTGGTGGAAGACTGAAAAA 1844
Query 2288 ATACCAGGCGATGAAGAATACACCTTCTTGTGAAGCCAACAAGCCATCTCCAATTGAGTC 2347
| ||| | | ||||||||||||| |||||||| ||| ||||||||||| || || ||
Sbjct 1845 ACCCCACTTGTTAAAGAATACACCTTTTTGTGAAGTCAATAAGCCATCTCCGATAGAATC 1904
Query 2348 TCCCTTGTCTAGATCACGGGCTGCGGATGAAAAACAAGCTAATGATGGAAGCTGGCAAAT 2407
||||||||| |||| ||| | ||| ||||||||||||| |||||||||||||||||||||
Sbjct 1905 TCCCTTGTCAAGATTACGAGTTGCAGATGAAAAACAAGTTAATGATGGAAGCTGGCAAAT 1964
Query 2408 GTGGAAGA 2415
||||||||
Sbjct 1965 GTGGAAGA 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117394135090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5