BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51650.1
Length=2979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323716 jgi|Araly1|323716|fgenesh1_pm.C_scaffold_5001260 3692 0.0
Ahg345632 jgi|Araly1|345632|fgenesh1_pg.C_scaffold_4001974 1005 0.0
> Ahg323716 jgi|Araly1|323716|fgenesh1_pm.C_scaffold_5001260
Length=2454
Score = 3692 bits (1999), Expect = 0.0
Identities = 2333/2489 (94%), Gaps = 43/2489 (2%)
Strand=Plus/Plus
Query 387 ATGCTACCTTGGTTTGTCATACCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCA 446
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTGCCTTGGTTTGTCATTCCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCA 60
Query 447 CCAGCTTTTCGTTTTGAGATTACTTCTCCCAGGCTTGCTTGTGTATTTGTGCTCTTGGTT 506
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 CCAGCTTTTCGTTTTGAGATTACTTCTCCAAGGCTTGCTTGTGTGTTTGTGCTCTTGGTT 120
Query 507 ACTTTGTTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGGGTACGTAGAAAT 566
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 121 ACTTTGTTCTGGTACGAGGTTTTGATGCCTCAGCTGTCTACTTGGAGGGTACGTAGAAAT 180
Query 567 GCCCAACTTAGGGAGAGAGAAAGATTAGAAGCTATTGAATTGCAAAAGTTGAAGAAAAAT 626
|||||||| ||||||||||| |||||||||||||||||| |||||||| | |||||||||
Sbjct 181 GCCCAACTCAGGGAGAGAGAGAGATTAGAAGCTATTGAACTGCAAAAGCTAAAGAAAAAT 240
Query 627 GCCACAAGGCGTTGTCGTAACTGCTCAA-ATCCTTACAGGGACCAAAATCCAGGTGGTGG 685
|| ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 241 GCGACAAGGCGTTGTCGTAACTGCTCAACA-CCTTACAGGGACCAAAATCCATGTGGTGG 299
Query 686 GAAATTTATGTGTTCGTATTGTGGACATGTATCAAAACGGCCTGTTTTAGACATGGCCTT 745
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 300 GAAATTTATGTGTTCGTATTGTGGGCATGTATCAAAACGCCCTGTTTTAGACATGGCCTT 359
Query 746 GTCTTCCGGATTAGAGATTTCTGGTTCAGGGATTTTGAAGGATCTTGTTGGAAGAGGTGG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 360 GTCTTCCGGATTAGAGATTTCTGGTTCAGGGATTTTGAAGGATCTTGTTGGAAAAAGTGG 419
Query 806 AAAGATGTTGAATGGGAAGGGATGGAGTGAGAATGGATATTTGCACAGGCAAGAGTGGTC 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAAGATGTTGAATGGGAAGGGATGGAGTGAGAATGGATATTTGCACAGGCAAGAGTGGTC 479
Query 866 TGACAACAGCACATGGACTAGCGGGTCAAGCTATTGGCGGAATAATAGTGGCGATACGTT 925
||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 480 TGACAGCAGCACATGGAATAGCGGGTCAAGCTATTGGCGGAATAATAGTGGTGGTACATT 539
Query 926 TGAAGGAGATGAAAATTGTTTGGTGGAGAAATCATATTCTGGTGGTGTTGTTTTTGCTTG 985
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 540 TGAAGGAGATGAAAATTGTTTGGTGGAAAAATCATACTCTGGTGGTGTTGTTTTTGCTTG 599
Query 986 CAGGTTGTTGACTTCTTTTTTCATGAGCATTTTGTGGCTTTGGAGAAAGATATTTAGATT 1045
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 CAGGTTGCTGACTTCTTTTTTCATGAGCATTTTGTGGCTTTGGAAAAAGATATTTAGATT 659
Query 1046 TAGCTCATCAGTTGGTGATTCATCACTTGACCCTGAGCAGAGGCGGATG-TTGGCTAGGC 1104
||||||||||| || |||||| |||||||||||||||||||||||| || | || |||||
Sbjct 660 TAGCTCATCAGCTGATGATTCGTCACTTGACCCTGAGCAGAGGCGGTTGCTAGG-TAGGC 718
Query 1105 AGGGTGAGAACGGGACAAGC-AGTCATGAAAGTAGGGTAGAAAAGGCACGTagaaaagca 1163
|||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 719 AGGGTGAGAACGGGACCAGCTA-TCATGAAAGTAGGGTAGAAAAAGCACGTAGAAAAGCA 777
Query 1164 gaggagaaaagacaagctaggctagagaaggagcattcagaggaggaagagagaaaacaa 1223
|||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||
Sbjct 778 GAGGAGAAAAGACAAGCTAGGCTAGAAAAAGAGCTTTCAGAGGAGGAAGAAAGAAAACAA 837
Query 1224 agagaggAAGTAGCAAGATTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGATACTTGAG 1283
||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGAGAAGAAGTCGCAAGACTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGATACTTGAG 897
Query 1284 GCCGAGAAATGCAGCAAATTTTCAGTGGCTGCTaaggagaaagacactaaggaggcagaa 1343
|||||||||||||||||||| ||||| | ||| | ||||||||||||||
Sbjct 898 GCCGAGAAATGCAGCAAATTATCAGT-G--GCT---------G---CTAAGGAGGCAGAA 942
Query 1344 aagaaacgtcaggagagaagaaaagagagagaTAGGGCCTCAAGTAAGAGCAATTCTGAT 1403
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 AAGAAGCGTCAGCAGAGAAGAAAAGAGAGAGATAGGGCCTCAAGTAAGAGCAATTCTGAT 1002
Query 1404 GGTGAAGAGGTTGACAAGAGAACAAGAAAGGAAACCGAGCAGAAGCGCGGGCTTAATAAG 1463
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1003 GGTGAAGAGGTTGACAAGAGAACAAGAAAGGAAACTGAGCAGAAGCGTGGGCTTAATAAG 1062
Query 1464 AGCGATCATCTGGAACATGAGAGGCACGCACCTGATAATTTAAGGGGCCCCAACATGGAA 1523
||||||||||| | || | ||||||||||||||||||||||||| ||||||||||
Sbjct 1063 AGCGATCATCT-G-----GA-A--CACGCACCTGATAATTTAAGGGGCCTCAACATGGAA 1113
Query 1524 AGGAGACATGGACATGGTTTAGAGAATAATGTCACTAGTAACGGTACAAAATCTGGTGGT 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AGGAGACATGGACATGGTTTAGAGAATAATGTCACTAGTAACGGTACAAAATCTGGTGGT 1173
Query 1584 AGGTACTTTGATCGAATGAAGAGTACAACTTTT-TCTTCTTCAAAGGCTTTTACTGATAG 1642
||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 1174 AGGTACTTTGATCGAATGAAGGGTACAT-TTTTGTCTTCTTCAAAGGCTTTTACTGATAG 1232
Query 1643 TCGTATATTTGGGAGAGGTGTTAATACTTCTGCTACATTTGCAAGAGAAAACAAGCCAAC 1702
|||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||| |
Sbjct 1233 TCGTTTATTTGGGAGAGGTGTTTATACTTCTGCTACAGTTGCAAAAGAAAACAAGCCCAT 1292
Query 1703 TGGTTCTGCAGATAATTCTCATACCTATGCTCATTCTAGTCATATTAATCCTCCTGACTT 1762
||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||| ||
Sbjct 1293 TGGTTCTGCAGATAATTCTCACACCTATGCTCATTC--G-CATATCAATCCTCCTGAATT 1349
Query 1763 CGTGGCTATGAAATCTGTCCCTAATGAAGAGGAGAGGAACACTAATAATCCAGTTGTTTC 1822
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1350 TGTGGCTATGAAATCTGTCCCTAATGAAGAGGAAAGGAACACTAATAATCCAGTTGTTTC 1409
Query 1823 TGAGCCAAAACCGAGTAGAGAACCTAGAAAATCATGGCACCAACTGTTTGCTCGTTCAAC 1882
|||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1410 TGAGCCAACGCCGAGTAGAGAACTTAGAAAATCATGGCACCAACTGTTTGCCCGTTCAAC 1469
Query 1883 TCCTGCTCCTGTTTCCTCAAATGTTAATACTATAAGTAGACCTAGCACGAATCCCCAGCC 1942
||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1470 TCCTGTTCCTGTTTCCTCGAATGTTAATACTATAAGTAGACCTAGTATGAATCCCCAGCC 1529
Query 1943 AAATGTTCAGATCTCACAGGTTCCCAGTCAAGTTTCCTCAATACGAACCTTCGACAATTC 2002
|| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1530 AATTGTTCAGAGCTCACAGGTTACCAGTCAAGTTTCCTCAATACGAACCTTCGACAATCC 1589
Query 2003 CATCAGTTTTGGGCTCCCATCGCCATTTACCATACCGGTGTACTCTAGTGGATCCACTAC 2062
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1590 CATCAGTTTTGGGCTCCCATCGCCATTCACCATACCGGTGTACTCTAGTGGATCCACTAC 1649
Query 2063 CAGTAGTTTAGGTTTCTCACCTCCAACAGA-ATTTGTTTTTCCTCAACCCGGTGAAGATG 2121
||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||
Sbjct 1650 CAGTAGTCTAGGTTTCTCACCTCCAACAGAGATT-GTTTTTCATCAACCCGGAGAAGATG 1708
Query 2122 AGCGTTTTGAAGATCCATGTTATGTTCCGGATCCGATATCTCTACTGGGACCTGTTTCAG 2181
|||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1709 AGCGTTTTGAAGATCCTTGTTATGTTCCGGATCCAATATCTCTTCTGGGACCTGTTTCAG 1768
Query 2182 AATCACTTGATTTAAGAGCTGCTGGGTATGAAACTGGCATAGGACAGGTAAAATACCATG 2241
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1769 AATCACTTGATTTAAGAGATGCTGGGTATGAAACTCGCATAGGACAGGTAAAATACCATG 1828
Query 2242 CGATGAAGAATACACCTTCTTGTGAAGCCAACAAGCCATCTCCAATTGAGTCTCCCTTGT 2301
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1829 CGATGAAGAATACACCTTCTTGTGAAGCCAACAAGCCGTCTCCAATTGAATCTCCCTTGT 1888
Query 2302 CTAGATCACGGGCTGCGGATGAAAAACAAGCTAATGATGGAAGCTGGCAAATGTGGAAGA 2361
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1889 CTAGATCACGGGCTGCGGATGAAAAGCAAGCTAATGATGGAAGCTGGCAAATGTGGAAGA 1948
Query 2362 GTCCTCTAGGCCAAAACGGTCTTGGTTTAGTTGGTGGGTCAGCAAACTGGGTTTTACCTT 2421
|||| |||||||||||| |||| |||||||||||||| |||||||||||| || ||||||
Sbjct 1949 GTCCCCTAGGCCAAAACAGTCTCGGTTTAGTTGGTGGTTCAGCAAACTGGATTATACCTT 2008
Query 2422 CTGAAATAAGTAGATCTATCGAGGAAAGTGATATGCATCACGCGCCTCAGCATAGAACAG 2481
|||||| ||||||||||| |||||||| || |||||| || | ||||||||| |||||||
Sbjct 2009 CTGAAACAAGTAGATCTAACGAGGAAATTGCTATGCACCATGTGCCTCAGCACAGAACAG 2068
Query 2482 AGTCATTATTTTCAAAAGAGGATTGCCAGCTTCATCAAGGTGCTTATTCACAAAGGAAGG 2541
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2069 AATCATTATTTTCAAAAGAGGATTGTCAGCTTCATCAAGGTGCTTATTCACAAAGGAAGG 2128
Query 2542 ACTATCTTGAACATGATCAGAGA-AGTGGCGTTTTCAGCCCCATTACTGGTCCAACCACT 2600
||| ||||||||||||||||||| | |||||||||||||||||| | |||||||||||||
Sbjct 2129 ACTGTCTTGAACATGATCAGAGAGA-TGGCGTTTTCAGCCCCATCAGTGGTCCAACCACT 2187
Query 2601 ACTGATCCTTGGTCACAGAAAATGTTCTTCCCTGCATTATCTGGTATTGAGAGTCCTTTT 2660
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 2188 ACTGATCCTTGGTCACAGAAAATGTTCTTCCCTGCATTAACTGGCATTGAGAGTCCTTTT 2247
Query 2661 TCTATCACCACACAAACAAAAAGCGTCTTGAACAATGCGGCAGG-GTACAGAAGTCCAAC 2719
||| |||||||||||||| ||||| |||||||||||| ||| || |||||||||||||||
Sbjct 2248 TCTTTCACCACACAAACAGAAAGCATCTTGAACAATGTGGC-GGCGTACAGAAGTCCAAC 2306
Query 2720 GGGATCTGGTCCAGACAATCCATTTGAACATCCTTCTCCTAATCACTGGCTCAAGAAGGT 2779
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2307 TGGATCTGCTCCAGACAATCCATTTGAACATCCGTCTCCTAATCACTGGCTCAAGAAGGT 2366
Query 2780 GAAGAGCTCAGGGGATGGGACTGGGAAGCAAGTTT-TGGCGGCCGGTGAAGTTGAGAACC 2838
|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct 2367 GAAGAGCTCAGGGGATGGGATTGGGAAGCAA-TTTGTGGCGGCCGGTGAAGTTGAGAACC 2425
Query 2839 ACCAAAAAGATGTAGAATCATTCTGGTAG 2867
|||||||||||||||||||||| ||||||
Sbjct 2426 ACCAAAAAGATGTAGAATCATTTTGGTAG 2454
> Ahg345632 jgi|Araly1|345632|fgenesh1_pg.C_scaffold_4001974
Length=2430
Score = 1005 bits (544), Expect = 0.0
Identities = 915/1089 (84%), Gaps = 45/1089 (4%)
Strand=Plus/Plus
Query 393 CCTTGGTTTGTCATACCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCACCAGCT 452
|||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 7 CCTTGGTTGGTCTTACCTTTGATTGGACTTTGGGCTCTGTCTCAGCTTCTTCCACCAGCT 66
Query 453 TTTCGTTTTGAGATTACTTCTCCCAGGCTTGCTTGTGTATTTGTGCTCTTGGTTACTTTG 512
||||||||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 67 TTTCGTTTTGAAATAACATCTCCGAGGCTAGCTTGTGTATTTGTGCTTTTGGTTACTTTG 126
Query 513 TTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGGGTACGTAGAAATGCCCA- 571
||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 127 TTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGTGTGCGGAGAAATGCT-AG 185
Query 572 ACTTAGGGAGAGAGAA-AGATTAGAAGCTATTGAATTGCAAAAG-TTGAAGAAAAATGCC 629
||||||||||||| || ||||| |||||||| ||| |||||||| || ||||||| |||
Sbjct 186 ACTTAGGGAGAGA-AAGAGATTGGAAGCTATGGAACTGCAAAAGCTT-AAGAAAACTGCT 243
Query 630 ACAAGGCGTTGTCGTAACTGCTCAAATCCTTACAGGGACCAAAATCCAGGTGGTGGGAAA 689
||| | ||||| ||||||||||||| |||||| ||||||||||||| |||||||| |||
Sbjct 244 ACACGACGTTGCCGTAACTGCTCAACGCCTTACCGGGACCAAAATCCTGGTGGTGGAAAA 303
Query 690 TTTATGTGTTCGTATTGTGGACATGTATCAAA-ACGGCCTGTTTTAGACATGGCCTTGT- 747
|||||||| || |||||||| ||| ||||||| | | ||||||||||||||| ||| ||
Sbjct 304 TTTATGTGCTCATATTGTGGGCATATATCAAAGA-GACCTGTTTTAGACATG-CCT-GTT 360
Query 748 CTTCC-GGATTAGAGA-TTTCTGGTTCAGGGATTTTGAAGGATCTTGTTGGAAGAGGTGG 805
| || || |||| || |||||||||| || || |||||||||||||| |||||||||||
Sbjct 361 CCCCCAGGGTTAG-GACTTTCTGGTTCTGGAATATTGAAGGATCTTGTAGGAAGAGGTGG 419
Query 806 AAAGATGTTGAATGGGAAGGGATGGAGTGAGAATGGATATTTGCACAGGCAAGAGTGGTC 865
||||| |||||||| |||||||||| ||||||||| | ||||| ||||||| |||||
Sbjct 420 TAAGATTTTGAATGGAAAGGGATGGAATGAGAATGGTTGGATGCACGGGCAAGAATGGTC 479
Query 866 TGACAACAGCACATGGACTAGCGGGTCAAGC-TATTGGCGGAATAATAGTGGC-GATACG 923
|| ||||||||||||||||||| |||| || |||||||||||| ||||||| | |||
Sbjct 480 AGAAAACAGCACATGGACTAGCGAGTCA-GCCTATTGGCGGAATCATAGTGGTAG-TACA 537
Query 924 TTTGAAGGAGATGAAAATTGTTTGGTGGAGAAATCATATTCTGGTGGTGTTGTTTTTGCT 983
|||| | |||||| ||||| |||| ||| ||||||||| ||||||| ||||||||||||
Sbjct 538 TTTGGTGAAGATGAGAATTGCTTGGGGGAAAAATCATATCCTGGTGGCGTTGTTTTTGCT 597
Query 984 TGCAGGTTG-TTGACTTCTTTTTTCATGAGCATTTTGTGGCTTTGGAGAAAGATATTTAG 1042
||| || || ||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 598 TGCCGGCTGCTTG-CTTCTTTTTTCATGAGCATTAGGTGGCTTTGGAGAAAGATTTTTAG 656
Query 1043 ATTTAGCTCATCAGTTGGTGATTCATCA-CTTGACCCTGAGCAGAGGCGGATGT--TGGC 1099
|||||||| || |||| ||| || ||| | || |||| ||||| || || | ||||
Sbjct 657 CTTTAGCTCTTCGGTTGATGAATCGTCAACC-GATGCTGACCAGAGACG-AT-TACTGGC 713
Query 1100 TAGGCAGGGTGAGAACGGGACAAGC-AGTCATGAAAGTAGGGTAGA-AAAGGCACGTaga 1157
||||||||||||||| ||||| ||| | |||||| |||||||| || |||| |||| |||
Sbjct 714 TAGGCAGGGTGAGAATGGGACCAGCTA-TCATGAGAGTAGGGTTGAGAAAG-CACGCAGA 771
Query 1158 aaagcagaggagaaaagacaagctaggctagagaaggagcattcagaggaggaagagaga 1217
||||| ||||||||||||||||||||||| || |||||||||| ||||| |||||||||
Sbjct 772 AAAGCCGAGGAGAAAAGACAAGCTAGGCTGGAAAAGGAGCATTTGGAGGAAGAAGAGAGA 831
Query 1218 aaacaaagagaggAAGTAGC-AAGATTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGAT 1276
|||||| |||||||||| || || | |||| ||||||||||||| | ||||||||||
Sbjct 832 AAACAACGAGAGGAAGTCGCGAA-ACTAGTGGAGGAACGGAGAAAATTAAGAGATGAGAA 890
Query 1277 -ACTTGAGGCCGAGAAATGCAGCAAATTTTCAG-TGGCTGCTaaggagaaagacactaa- 1333
| |||| ||||||| |||||||||| ||| || || | || || ||||| |||||
Sbjct 891 GA-TTGAAGCCGAGAGATGCAGCAAAGCATCATCTG-CTTCCAAAGAAAAAGATACTAAA 948
Query 1334 -ggagg-cagaaaagaa-acgtcaggagagaa-gaaaagagagagaTAGGGCCTCAAGTA 1389
|| || |||| ||||| | | |||||||||| |||| || |||||||| ||||| ||||
Sbjct 949 AGGGGGGCAGAGAAGAAGA-GCCAGGAGAGAAAGAAA-GAAAGAGATAGAGCCTCTAGTA 1006
Query 1390 AGAGCAATTCTGATGGT-GAAGAGGTTGACAAGAGAACAAGAAAGGAAACCGAGCAGAAG 1448
|||||||||| |||| | |||||| |||| ||||||| | |||| || || || || |||
Sbjct 1007 AGAGCAATTCCGATG-TCGAAGAGCTTGATAAGAGAATAGGAAAAGATACTGACCATAAG 1065
Query 1449 CGCGGGCTT 1457
|| | ||||
Sbjct 1066 CGTGAGCTT 1074
Score = 255 bits (138), Expect = 1e-66
Identities = 213/249 (86%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 2114 TGAAGATGAGCGTTTTGAAGATCCATGTTATGTTCCGGATCCGATATCTCTACTGGGACC 2173
|||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1728 TGAAGAAGAGCGTTTTGAAGATCCGTGTTATGTTCCGGATCCAATATCTCTTCTGGGACC 1787
Query 2174 TGTTTCAGAATCACTTGATTTAAGAGCTGCTGGGTATGAAACTGGCATAGGACAGGTAAA 2233
|||||||||||| |||||| |||| | ||||||| ||||||||| | ||| | |||
Sbjct 1788 TGTTTCAGAATCGCTTGATCTAAG-G--GCTGGGTTTGAAACTGGTGGAAGACTGAAAAA 1844
Query 2234 ATACCA-TGCGATGAAGAATACACCTTCTTGTGAAGCCAACAAGCCATCTCCAATTGAGT 2292
| ||| | | | ||||||||||||| |||||||| ||| ||||||||||| || || |
Sbjct 1845 ACCCCACT-TGTTAAAGAATACACCTTTTTGTGAAGTCAATAAGCCATCTCCGATAGAAT 1903
Query 2293 CTCCCTTGTCTAGATCACGGGCTGCGGATGAAAAACAAGCTAATGATGGAAGCTGGCAAA 2352
|||||||||| |||| ||| | ||| ||||||||||||| ||||||||||||||||||||
Sbjct 1904 CTCCCTTGTCAAGATTACGAGTTGCAGATGAAAAACAAGTTAATGATGGAAGCTGGCAAA 1963
Query 2353 TGTGGAAGA 2361
|||||||||
Sbjct 1964 TGTGGAAGA 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112480493485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5