BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51660.1
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485520 jgi|Araly1|485520|fgenesh2_kg.5__1512__AT3G51660.1 819 0.0
> Ahg485520 jgi|Araly1|485520|fgenesh2_kg.5__1512__AT3G51660.1
Length=626
Score = 819 bits (443), Expect = 0.0
Identities = 568/622 (91%), Gaps = 34/622 (5%)
Strand=Plus/Plus
Query 63 GAGATCTTCTCTTCCACAACTTCCAAACACCATTTAAATCCCCTCTCATTTGGTTTCTTG 122
|||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||
Sbjct 23 GAGATCTTCTCTTCCACAACTTCCAAACTCCATATAAAT--CCTCTCTTTTGGTTTCTTG 80
Query 123 AGATTCTT-GCAAACAAAGCTTAACGGGCGTTAGTATTCACGGTGAGAAAATGCCTTGTC 181
|||||||| || ||| |||||||| || | |||||||||||||||||||||
Sbjct 81 AGATTCTTGGC-AAC-AAGCTTAA----CG---G-----ACGGTGAGAAAATGCCTTGTC 126
Query 182 TTTACATTACAACAAACGTCAATTTTGACGGCGTTAACACCGATCCGTTCTACTCCGAAG 241
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 127 TTTACATTACAACCAACGTCAATTTTGACGGCGTTAACACCGATCCATTCTACTCGGAAG 186
Query 242 TCACCAAAGCCGTCGCTTCCATCGTCGGACGACCTCAAAACTTAGTGATGGTGGTGTTGA 301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 187 TCACCAAAGCCGTCGCTTCCATCGTCGGACGACCTCAGAACTTAGTGATGGTGGTGTTGA 246
Query 302 AGGGATCAGTAGAGATAGTATTTGGAGGGAACAAAGAAGCAGCTGCATATGCAGAGATTG 361
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AGGGATCAGTAGAGATAGTGTTTGGAGGGAACAAAGAAGCAGCTGCATATGCAGAGATTG 306
Query 362 TGTCAATGGGAGGCATCACCAAACAAGTTAAGAGAGAACTCATAGCGACCGTTGGTTCTA 421
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 307 TGTCAATGGGAGGTATCACCAAACAAGTTAAGAGAGAACTTATCGCGACCGTTGGTTCTA 366
Query 422 TTCTTCACACTCATTTTTCTATTCATCCCACTCGTTTTATCTTTAAAGTTTTTGATATTA 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 367 TTCTTCACACTCATTTTTCTATTCATCCCACTCGTTTTATCTTTAAAGTTTTTGATATCA 426
Query 482 ATTCTTTGCCTCTTCCTTCTAAACTTTAGT---GTTATGATCTTTGTATTGTTCATCAAA 538
||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 427 ATTCTTTACCTCTTCCTTCTAAACTGTAGTACTGTTATGATCTTTGTATTGTTCATCAAA 486
Query 539 CACAAATTATATA-CA-----G--A-CT--CACATGTTATTCTTTTCTTTATGAGTCTTC 587
|||| |||||||| || | | | |||||||| |||||||||||||||||||||
Sbjct 487 CACACATTATATATCATTCAAGTTAACCAACACATGTTTTTCTTTTCTTTATGAGTCTTC 546
Query 588 TCTATTTTTATGTTTACAAATCTTTTACTATTATATCATCATTCA-TGTAGATCTTGACC 646
||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||||
Sbjct 547 TCTATTTTTATGTTTACAAG-CTTTTACTACTATATCATCATTCAAT-TAGATCTTGACC 604
Query 647 CTATAATCTTAATATAAAACTT 668
|||||||||||||||||||||
Sbjct 605 GTATAATCTTAATATAAAACTT 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5