BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51670.1
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485521 jgi|Araly1|485521|fgenesh2_kg.5__1513__AT3G51670.1 2270 0.0
> Ahg485521 jgi|Araly1|485521|fgenesh2_kg.5__1513__AT3G51670.1
Length=1465
Score = 2270 bits (1229), Expect = 0.0
Identities = 1410/1493 (94%), Gaps = 30/1493 (2%)
Strand=Plus/Plus
Query 13 CCAAcaaaatcaaaatcaagaaaacaaaaaagaaaaaCTCTCAAGAAACAATGGATGCTT 72
||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1 CCAACAAAAACAAAATCAAG-AAA-GAAAAA-AAAAACTCTCAAGAAACAATGGATGCTT 57
Query 73 CATTGTCTCCATTCGATCACCAAAAAACTCAAAACACAGAGCCAAAGAAAAGCTTCATTA 132
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 58 CATTGTCTCCATTCGATCACCAAAAAACTCAAAACACAGAACCAAAGAAAAGCTTCATAA 117
Query 133 CCTCACTAATCACTCTCCGTTCAAACAACATCAAAGAAGACACATACTTCGTCTCAGAAC 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCTCACTAATCACTCTCCGTTCAAACAACATCAAAGAAGACACATACTTCGTCTCAGAAC 177
Query 193 TCAAACCCACGGAGCAAAAATCACTTCAAGAACTCAAAGAAAAGCTCTCAGCTTCATCCT 252
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 178 TCAAACCCACCGAGCAAAAATCACTTCAAGAACTCAAAGAAAAGCTCAAAGCTTCATCTT 237
Query 253 CCAAAGCTTCTTCAATGTGGGGAGTCTCACTCCTCGGTGGAGACGACAAAGCTGACGTAA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCAAAGCTTCTTCAATGTGGGGAGTCTCACTCCTCGGTGGAGACGACAAAGCTGACGTAA 297
Query 313 TCCTCCTCAAGTTCCTCAGAGCAAGAGATTTCAAAGTAGCAGACTCTTTGAGAATGCTTG 372
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 298 TCCTCCTCAAGTTCCTCAGAGCAAGAGATTTCAAAGTAGCAGACTCTTTAAGGATGCTTG 357
Query 373 AGAAGTGTTTGGAGTGGAGAGAAGAGTTCAAAGCAGAGAAATTGACAGAAGAAGATCTGG 432
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 358 AAAAGTGTTTGGAGTGGAGAGAAGAGTTTAAAGCAGAGAAATTGACTGAAGAAGATCTGG 417
Query 433 GTTTTAAAGATTTGGAAGGTAAAGTTGCTTACATGAGAGGCTACGACAAAGAAGGACACC 492
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTTCAAAGATTTGGAAGGTAAAGTTGCTTACATGAGAGGCTACGACAAAGAAGGACACC 477
Query 493 CAGTTTGTTACAATGCTTATGGTGTGTTTAAAGAGAAAGAGATGTATGAGAGAGTGTTTG 552
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 CAGTTTGTTACAATGCTTATGGTGTGTTTAAAGAGAGAGAGATGTATGAGAGAGTGTTTG 537
Query 553 GTGATGAAGAGAAGCTTAACAAGTTTCTGAGATGGAGAGTTCAGGTTTTGGAGAGAGGTG 612
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 GTGATGAAGAGAAGCTTAACAAGTTTCTGAGATGGAGAGTTCAGGTCTTGGAGAGAGGTG 597
Query 613 TTAAAATGCTTCATTTTAAACCTGGTGGTGTTAATTCCATTATTCAAGTTACAGATCTTA 672
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 TTAAAATGCTTCATTTTAAACCTGGTGGTGTTAATTCTATTATTCAAGTTACAGATCTTA 657
Query 673 AAGATATGCCTAAGAGAGAGCTTAGAGTTGCTTCTAATCAGATCCTCTCTCTTTTTCAAG 732
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 658 AAGATATGCCTAAGAGAGAGCTTAGAGTTGCTTCTAATCAGATTCTCTCTCTTTTTCAAG 717
Query 733 ATAATTACCCTGAATTGGTTGCTACTAAGATATTCATAAACGTGCCTTGGTACTTCAGTG 792
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 ATAATTACCCTGAAATGGTTGCTACTAAGATATTCATTAACGTGCCTTGGTACTTCAGTG 777
Query 793 TGATCTACTCAATGTTCAGCCCATTCCTGACTCAGAGAACAAAGAGCAAGTTTGTGATGT 852
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 778 TAATCTACTCAATGTTCAGCCCTTTCCTGACTCACAGAACAAAGAGCAAGTTTGTGATGT 837
Query 853 CCAAAGAAGGCAATGCAGCAGAAACACTCTACAAGTTCATTAGGCCAGAAGATATTCCGG 912
| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 838 CTAAAGAAGGCAATGCAGCTGAAACACTCTACAAATTCATAAGGCCAGAAGATATTCCGG 897
Query 913 TGCAATACGGTGGTCTTAGCCGTCCTACTGATTCGCAAAACGGACCGCCAAAACCGGCGT 972
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 898 TGCAATATGGTGGCCTTAGCCGTCCAACTGATTCGCAAAACGGACCGCCAAAACCCGCGT 957
Query 973 CTGAATTCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAGGGTG 1032
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 CTGAATTCTCCATCAAGGGTGGTGAAAAAGTTAACATTCAGATTGAAGGCATTGAGGGTG 1017
Query 1033 GAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGTACAGTGCAGAGT 1092
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1018 GAGCAACCATAACATGGGATATTGTAGTTGGAGGATGGGATTTAGAGTACACTGCAGAGT 1077
Query 1093 TTGTTCCAAACGCTGAAGAGAGTTACGCGATCGTTGTCGAGAAACCGAAGAAGATGAAAG 1152
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1078 TTGTTCCAAACGCTGAAGAGAGTTACGCGATTGTGGTGGAGAAACCGAAGAAGATGAAAG 1137
Query 1153 CTACAGATGAAGCTGTTTGCAACTCTTTCACTACAGTAGAAGCTGGGAAGCTCATTCTCT 1212
|| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1138 CTTCAGATGAAGCTGTTTGCAACTCTTTCACAACAGTAGAAGCTGGGAAACTCATTCTCT 1197
Query 1213 CTGTTGACAATACTCTCTCTCGCAAGAAGAAAGTTGCTGCTTACCGTTACACTGTCCGGA 1272
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1198 CTGTTGACAATACTCTGTCTCGCAAGAAGAAAGTCGCTGCTTACCGTTACACTGTCCGGA 1257
Query 1273 AATCTACTACAACCGTCTAATCTATA-ACCGGTTTTTCAGAAGATTGGTTGCTTTCTTAC 1331
||||||||||||||| |||||||| | |||| |||||| ||||||||||| ||||||||
Sbjct 1258 AATCTACTACAACCGCCTAATCTA-AGACCGTTTTTTCGGAAGATTGGTTTCTTTCTTAT 1316
Query 1332 TACTACTTTTTGTGGGTGTGTTGAGGGGTTTTCTTTCTTGGGTTTGAGTACTAGGTTTGT 1391
||||||||||| ||||||||||||||| |||||||||||||||||| | | |
Sbjct 1317 TACTACTTTTTTTGGGTGTGTTGAGGG-TTTTCTTTCTTGGGTTTG-G-----G-T---- 1364
Query 1392 TTTGCTTACTCAACGGTTCATGTTGAACCGGAAATATCGATAAATTTGCGAGGAAATCAT 1451
||| | ||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1365 -------ACT-A--GGT-CATGTTGAACCGGAAATATCGAAAAATTTGCAAGGAAATCAT 1413
Query 1452 ATGTATAAAAACTATGATTTGTATGACATTTGA-TGTTTGGCCTTAATATTTT 1503
||||||||| || |||||||||||||||||||| | |||||| ||||||||||
Sbjct 1414 ATGTATAAATACAATGATTTGTATGACATTTGAATATTTGGC-TTAATATTTT 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59725504160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5