BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51680.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323719 jgi|Araly1|323719|fgenesh1_pm.C_scaffold_5001263 1349 0.0
> Ahg323719 jgi|Araly1|323719|fgenesh1_pm.C_scaffold_5001263
Length=909
Score = 1349 bits (730), Expect = 0.0
Identities = 850/908 (94%), Gaps = 7/908 (1%)
Strand=Plus/Plus
Query 7 GCCCAAGTGATCGCTGAGCAGACCACCTTTCACTCCGTCCACGACACCATTATGGAGGAG 66
|||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 7 GCCCAAGTGATCTCTGAGCAG---ACCTTTCACTCCATCCACGACACCAGGATGGAGGAG 63
Query 67 ACGAATACAACTTTATATCCTAAGAGGTTGGAAGGAAAAGTAGCCATCATAACCGGAGGC 126
||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 64 ACGAATACAACTTTATATCATAAGAGGTTGGAAGGAAAAGTAGCCATTATCACCGGAGGC 123
Query 127 GCACATGGAATAGGCAAAGCAACCGTCATGTTATTCGCTAGACACGGTGCCACAGTGGTG 186
||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 124 GCACATGGAATAGGCAAAGCAACTGTCATGCTATTCGCTAGACACGGTGCCACGGTGGTG 183
Query 187 ATTGCTGACGTGGACAACGTAGCTGGCTCTTCCCTGGCTAAGTCACTCTCATCCCACAAA 246
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 184 ATTGCTGACGTGGACAATGTAGCTGGCTCTTCCCTGGCTAAGTCACTTTCATCCCACTTA 243
Query 247 ACCTCC-CCGATGGTGGCATTCATTAGCTGCGATGTCTCCGTAG-AAGCCGACGTGGAAA 304
||| || | | |||| |||||||||||||||||||||| || | ||| |||||||||||
Sbjct 244 ACCGCCTTC-ACGGTGACATTCATTAGCTGCGATGTCTCAGTCGAAAG-CGACGTGGAAA 301
Query 305 ACCTTGTGAACGTAACCGTTGCACGGTACGGTAGGCTTGACATTCTATTCAACAACGCGG 364
|||| ||||||| ||| || || || |||||||||||||||||||||||||||||||| |
Sbjct 302 ACCTCGTGAACGCAACGGTCGCGCGCTACGGTAGGCTTGACATTCTATTCAACAACGCAG 361
Query 365 GAGTTCTCGGAGATCAGAAGAAACACAAAAGCATATTAGACTTCGACGCGGACGAGTTTG 424
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 362 GAGTTCTCGGAGACCAGAAGAAACACAAAAGTATATTAGACTTCGACGCGGACGAGTTCG 421
Query 425 ACCACGTGATGCGTGTGAACGTACGTGGCGTAGGACTCGGCATGAAACACGGGGCACGCG 484
||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |
Sbjct 422 ACCGCGTGATGCGTGTGAACGTGCGTGGCATAGGACTCGGCATGAAACACGCGGCACGTG 481
Query 485 CTATGATCAAGAGAGGATTCAAAGGCTGCATAATCTCCACGGCGAGTGTAGCCGGTGTGA 544
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 CCATGATCAAGAGAGGGTTCAAAGGTTGCATAATCTCCACGGCGAGTGTAGCCGGTGTGA 541
Query 545 TGGGTGGAATGGGACCACACGCTTACACAGCCTCGAAACATGCGATCGTTGGTTTGACCA 604
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 542 TGGGTGGAATGGGACCACACGCTTACACGGCCTCGAAACATGCGATCGTTGGTTTGACCA 601
Query 605 AGAACGCAGCGTGTGAGCTAGGCAAGTATGGGATTAGGGTTAATTGTATATCACCGTTTG 664
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 602 AGAACGCAGCGTGTGAGCTAGGCAAGTATGGGATTAGGGTTAACTGTATATCACCGTTTG 661
Query 665 GAGTTGCCACGTCGATGCTGGTTAACGCGTGGCGAAAGACGAGTGGTGGTGACGTGGAAG 724
| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 662 GTGTTGCCACGTCAATGCTGGTTAATGCGTGGCGAAAGACGAGTGGTGGTGACGTGGAAG 721
Query 725 ATGATGACGTGGAGGAGATGGAGGAGTTTGTGAGGAGTTTGGCTAATTTGAAAGGAGAGA 784
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 722 ATGATGAAGTGGAGGAGATGGAAGAGTTTGTGAGGAGTTTGGCTAATTTGAAAGGAGAGT 781
Query 785 CATTGAGAGCGAATGATATAGCTGAAGCAGCGTTATATTTGGCGAGTGATGAGTCTAAGT 844
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 782 CTTTGAGAGCGAATGATATAGCTGAAGCAGCGTTATATTTGGCAAGTGATGAGTCTAAAT 841
Query 845 ATGTGAACGGACATAATCTTGTCGTTGACGGTGGTGTTACGACTGCAAGAAACTGTGTTG 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ATGTGAACGGACATAATCTTGTCGTTGACGGTGGTGTTACGACTGCAAGAAACTGTGTTG 901
Query 905 GTTTGTGA 912
| || |||
Sbjct 902 GCTTATGA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5