BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G51700.1

Length=1256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938032 jgi|Araly1|938032|scaffold_502223.1                        191    1e-47


> Ahg938032 jgi|Araly1|938032|scaffold_502223.1
Length=225

 Score =  191 bits (103),  Expect = 1e-47
 Identities = 147/167 (88%), Gaps = 7/167 (4%)
 Strand=Plus/Plus

Query  25   ATTCACAAACCGCTACAATAATGGCCCTAATT-GACATACACTCCTCTCCTGCTTCTCTC  83
            |||| || ||||||||||||||||||||  || | || | ||| || | |||||||||||
Sbjct  1    ATTCGCAGACCGCTACAATAATGGCCCTGGTTCG-CAAAAACT-CT-T-CTGCTTCTCTC  56

Query  84   GATGAGATCAAACCATGGAAGATCAACA-TGCATATAGTTAGAACTTGGAAGGGAAATGA  142
            |||||||||||||||||||||||||| | |||| || |||||||| ||||||||  || |
Sbjct  57   GATGAGATCAAACCATGGAAGATCAA-AGTGCAGATTGTTAGAACGTGGAAGGGTGATAA  115

Query  143  CAAAGAATCAGGCAACTCCATCGACATGGTTTTACTCGATTCATCGG  189
            ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  116  CAAAGAATCAGGCAACTCCGTCGACATGGTTTTACTCGATTCATCGG  162



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46929310827


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5