BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51710.1 Length=1431 Score E Sequences producing significant alignments: (Bits) Value Ahg323720 jgi|Araly1|323720|fgenesh1_pm.C_scaffold_5001264 2209 0.0 > Ahg323720 jgi|Araly1|323720|fgenesh1_pm.C_scaffold_5001264 Length=1419 Score = 2209 bits (1196), Expect = 0.0 Identities = 1326/1391 (95%), Gaps = 0/1391 (0%) Strand=Plus/Plus Query 1 ATGATGATGAAGTTCTATACGTTCACTTTCTTAATCTGCTTGTTCTCGAAGCTCCAAGGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGATGAAGTTCTATACGTTCACTTTCTTAATCTGCTTGTTCTCGAAGCTCCAAGGT 60 Query 61 CACTGCAAATCAGATATCAGCCTTGGCAATTCTCTGACGCTCACTTCTCCTCTAGAATAC 120 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 61 CACTGCAAATCAGATATCAGCCTTGGTAATTCCCTGACGCTCACTTCTCCTCTAGAATAC 120 Query 121 ACTCCAGGGTTTATGGGGAAAGCTTATATCATAGAGACAGAATCATCGTCAACAAGAGAA 180 ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 121 ACTCCCGGGTTTATGGGGAAAGCTTATATAATGGAGACAGAATCATCGTCAACAAGAGAA 180 Query 181 CCTGGTTTTAAAGCCGCGTTAACAATGGAATCAAGCGACAAAGATGATGGAAGATATTTA 240 || ||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct 181 CCCGGTTTCAAAGCCGCGTTAACGATGGAATCAAGTGACAAAGATGATGGACGATATTTG 240 Query 241 TGTTCCCTTCAAATTTTCCTTGGAGATGTAAGAGTTTGGAGCTCAGGGCATTACTCAAAG 300 |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct 241 TGTTCCCTTCAAGTTTTTCTTGGAGATGTAAGAGTATGGAGCTCAGGGCATTACTCGAAG 300 Query 301 ATGTACGTTTCTAGCAAATGCATCATTGAGCTCACGAAAGATGGAGACTTGAGACTCAAG 360 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| Sbjct 301 ATGTACGTTTCTAGCAAATGCATCATTGAGCTCACAAAAGATGGAGACTTGAGGCTAAAG 360 Query 361 AGTAGCTATAAACACGTTGGATGGAGAAGTGGAACCTCAGGACAAGGCGTTGAGAGGTTG 420 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 361 AGTAGCAATAAACACGTTGGATGGAGAAGTGGAACCTCAGGACAAGGCGTGGAGAGGTTG 420 Query 421 GAGATACAAAGCACAGGGAATCTAGTGTTGGTTGATGCTAAGAATCTGATCAAATGGCAA 480 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 421 GAGATACAAAGCACAGGGAATCTAGTGTTGGTTGATGCTAAGAATTTGATCAAATGGCAA 480 Query 481 AGTTTCAATTTCCCAACAGATGTGATGTTGAGTGGTCAGAGACTAGACGTGGCTACGCAA 540 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 481 AGTTTCAATTTCCCAACAGATGTGATGTTGAGTGGTCAGAAACTAGACGTGGCGACGCAA 540 Query 541 CTAACTTCATTCCCAAATGACTCGACTCTGTTCTATTCCTTTGAAGTCTTACGCGACAAG 600 ||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||||| Sbjct 541 CTAACTTCATTCCCAAATGACTCGACTTTGTTCTATTCATTTGAAATTTTACGCGACAAG 600 Query 601 ATTGCTCTGTTCCTAAATTTGAACAAGCTCAAGTACTCTTACTGGGAATACAAGCCTAGA 660 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | Sbjct 601 ATTGCTCTGTTCCTAAATTTGAACAAGCTCAAGTACTCCTACTGGGAATACGAGCCTATA 660 Query 661 GAGAAGAACACAACGGTCAACTTCGTGAGACTAGGGTTAAAGGGTCTTGACCTATTCGAC 720 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 661 GAGAAGAACACAACGGTCAACTTCGTGAGGTTGGGGTTAAAGGGTCTTGACCTATTCGAC 720 Query 721 GATAACAGTCGCATAATCGGAAGAATAGAGCAACCGTTGATCAGATTCTTGGCGCTTGGA 780 |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 721 GATAACAGCCACATAATCGGAAGAATCGAGCAACCGTTGATCAGATTCTTGGCGCTTGGG 780 Query 781 AACAGAACCGGTAATTTAGGACTCTATTCGTATAAACCGGAAAAGGGAAAGTTCGAGGCA 840 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 781 AACAGAACCGGTAATTTAGGACTCTACTCGTATAAACCGGAAAAGGGAAAGTTCGAGGCA 840 Query 841 ACGTTTCAAGCTGTGAGCGACACTTGTGATCTTCCTGTAGCGTGTAAACCATATGGAATC 900 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 ACGTTTCAAGCTGTAAGCGACACTTGTGATCTTCCTGTAGCGTGTAAACCATATGGAATC 900 Query 901 TGTACATTCTCAAAGTCTTGTTCTTGCATTAAGGTTGTAAGCAATGGATATTGCAGCAGC 960 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| Sbjct 901 TGTACATTCTCAAAGTCTTGTTCTTGCATTAAGGTTGTGAGCAATGGAGATTGTAGCAGC 960 Query 961 ATCAACGGGGAAGAAGCTGTTTCAGTGAAGAGGCTATGTGATCATGAGATGGTTGAGCTA 1020 ||||||| ||||||||| ||||| ||||||||| |||| || || ||||||||||||||| Sbjct 961 ATCAACGTGGAAGAAGCGGTTTCGGTGAAGAGGTTATGCGACCACGAGATGGTTGAGCTA 1020 Query 1021 AATGGAGTCACTACAGTGCTAAGAAACGGGACACAAGTGAGAAACATAAGCAAAGAAAGA 1080 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1021 AAAGGAGTTACTACAGTGCTAAGAAACGGGACACAAGTGAGAAACATCAGCAAAGAAAGA 1080 Query 1081 TGTGAAGAGTTGTGTAAGAAAGATTGTGAGTGTGGAGCTGCGAGTTACTCTGTTTCTGAA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 TGTGAAGAGTTGTGTAAGAAAGATTGTGAGTGTGGAGCTGCGAGTTACTCTGTTTCTGGT 1140 Query 1141 GAGAGTTGTGTCATGTATGGGATAGTGATGGGTGTTAAACAGATTGAGAGAGTTAGTGGA 1200 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1141 GAGAGTTGTGTCATGTATGGGATTGTGATGGGTGTTAAACAGATTGAGAGAGTGAGTGGA 1200 Query 1201 TTGAGTTATATGGTGAAGATTCCTAAAGGAGTGAGATTGAGTGATGAGAAATCTAATGTG 1260 |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct 1201 TTGAGTTATATGGTGAAGATTCCTAAAGGAGTGAGATTAAGTGATGAGAAACCGAATGTT 1260 Query 1261 AGAAAATGGGTGGTGGGATTAGTTGGAGGTATTGATGGTTTTGTGATTTTGTTGCTTATT 1320 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1261 AGAAAATGGGTTGTGGGATTAGTTGGAGGTATTGATGGTTTTGTGATTTTGTTGCTTCTT 1320 Query 1321 TCTGGATTTGCTTTTTATTTCATTCGGAAGCGACGGAAAAGCTTGTTACTGCCGCCACCG 1380 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1321 TCTGGATTTGCTTTTTATTTCATTCGGAAGCGACGGAAAAGCTTGTCACTGCCGCCACCT 1380 Query 1381 CCACCGCCACC 1391 ||||||| ||| Sbjct 1381 CCACCGCTACC 1391 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53516794225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5