BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51710.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323720 jgi|Araly1|323720|fgenesh1_pm.C_scaffold_5001264 2209 0.0
> Ahg323720 jgi|Araly1|323720|fgenesh1_pm.C_scaffold_5001264
Length=1419
Score = 2209 bits (1196), Expect = 0.0
Identities = 1326/1391 (95%), Gaps = 0/1391 (0%)
Strand=Plus/Plus
Query 1 ATGATGATGAAGTTCTATACGTTCACTTTCTTAATCTGCTTGTTCTCGAAGCTCCAAGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGATGAAGTTCTATACGTTCACTTTCTTAATCTGCTTGTTCTCGAAGCTCCAAGGT 60
Query 61 CACTGCAAATCAGATATCAGCCTTGGCAATTCTCTGACGCTCACTTCTCCTCTAGAATAC 120
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 61 CACTGCAAATCAGATATCAGCCTTGGTAATTCCCTGACGCTCACTTCTCCTCTAGAATAC 120
Query 121 ACTCCAGGGTTTATGGGGAAAGCTTATATCATAGAGACAGAATCATCGTCAACAAGAGAA 180
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 ACTCCCGGGTTTATGGGGAAAGCTTATATAATGGAGACAGAATCATCGTCAACAAGAGAA 180
Query 181 CCTGGTTTTAAAGCCGCGTTAACAATGGAATCAAGCGACAAAGATGATGGAAGATATTTA 240
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 181 CCCGGTTTCAAAGCCGCGTTAACGATGGAATCAAGTGACAAAGATGATGGACGATATTTG 240
Query 241 TGTTCCCTTCAAATTTTCCTTGGAGATGTAAGAGTTTGGAGCTCAGGGCATTACTCAAAG 300
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 241 TGTTCCCTTCAAGTTTTTCTTGGAGATGTAAGAGTATGGAGCTCAGGGCATTACTCGAAG 300
Query 301 ATGTACGTTTCTAGCAAATGCATCATTGAGCTCACGAAAGATGGAGACTTGAGACTCAAG 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 301 ATGTACGTTTCTAGCAAATGCATCATTGAGCTCACAAAAGATGGAGACTTGAGGCTAAAG 360
Query 361 AGTAGCTATAAACACGTTGGATGGAGAAGTGGAACCTCAGGACAAGGCGTTGAGAGGTTG 420
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 AGTAGCAATAAACACGTTGGATGGAGAAGTGGAACCTCAGGACAAGGCGTGGAGAGGTTG 420
Query 421 GAGATACAAAGCACAGGGAATCTAGTGTTGGTTGATGCTAAGAATCTGATCAAATGGCAA 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GAGATACAAAGCACAGGGAATCTAGTGTTGGTTGATGCTAAGAATTTGATCAAATGGCAA 480
Query 481 AGTTTCAATTTCCCAACAGATGTGATGTTGAGTGGTCAGAGACTAGACGTGGCTACGCAA 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 481 AGTTTCAATTTCCCAACAGATGTGATGTTGAGTGGTCAGAAACTAGACGTGGCGACGCAA 540
Query 541 CTAACTTCATTCCCAAATGACTCGACTCTGTTCTATTCCTTTGAAGTCTTACGCGACAAG 600
||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||
Sbjct 541 CTAACTTCATTCCCAAATGACTCGACTTTGTTCTATTCATTTGAAATTTTACGCGACAAG 600
Query 601 ATTGCTCTGTTCCTAAATTTGAACAAGCTCAAGTACTCTTACTGGGAATACAAGCCTAGA 660
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
Sbjct 601 ATTGCTCTGTTCCTAAATTTGAACAAGCTCAAGTACTCCTACTGGGAATACGAGCCTATA 660
Query 661 GAGAAGAACACAACGGTCAACTTCGTGAGACTAGGGTTAAAGGGTCTTGACCTATTCGAC 720
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 661 GAGAAGAACACAACGGTCAACTTCGTGAGGTTGGGGTTAAAGGGTCTTGACCTATTCGAC 720
Query 721 GATAACAGTCGCATAATCGGAAGAATAGAGCAACCGTTGATCAGATTCTTGGCGCTTGGA 780
|||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 GATAACAGCCACATAATCGGAAGAATCGAGCAACCGTTGATCAGATTCTTGGCGCTTGGG 780
Query 781 AACAGAACCGGTAATTTAGGACTCTATTCGTATAAACCGGAAAAGGGAAAGTTCGAGGCA 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 AACAGAACCGGTAATTTAGGACTCTACTCGTATAAACCGGAAAAGGGAAAGTTCGAGGCA 840
Query 841 ACGTTTCAAGCTGTGAGCGACACTTGTGATCTTCCTGTAGCGTGTAAACCATATGGAATC 900
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACGTTTCAAGCTGTAAGCGACACTTGTGATCTTCCTGTAGCGTGTAAACCATATGGAATC 900
Query 901 TGTACATTCTCAAAGTCTTGTTCTTGCATTAAGGTTGTAAGCAATGGATATTGCAGCAGC 960
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 901 TGTACATTCTCAAAGTCTTGTTCTTGCATTAAGGTTGTGAGCAATGGAGATTGTAGCAGC 960
Query 961 ATCAACGGGGAAGAAGCTGTTTCAGTGAAGAGGCTATGTGATCATGAGATGGTTGAGCTA 1020
||||||| ||||||||| ||||| ||||||||| |||| || || |||||||||||||||
Sbjct 961 ATCAACGTGGAAGAAGCGGTTTCGGTGAAGAGGTTATGCGACCACGAGATGGTTGAGCTA 1020
Query 1021 AATGGAGTCACTACAGTGCTAAGAAACGGGACACAAGTGAGAAACATAAGCAAAGAAAGA 1080
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 AAAGGAGTTACTACAGTGCTAAGAAACGGGACACAAGTGAGAAACATCAGCAAAGAAAGA 1080
Query 1081 TGTGAAGAGTTGTGTAAGAAAGATTGTGAGTGTGGAGCTGCGAGTTACTCTGTTTCTGAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGTGAAGAGTTGTGTAAGAAAGATTGTGAGTGTGGAGCTGCGAGTTACTCTGTTTCTGGT 1140
Query 1141 GAGAGTTGTGTCATGTATGGGATAGTGATGGGTGTTAAACAGATTGAGAGAGTTAGTGGA 1200
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1141 GAGAGTTGTGTCATGTATGGGATTGTGATGGGTGTTAAACAGATTGAGAGAGTGAGTGGA 1200
Query 1201 TTGAGTTATATGGTGAAGATTCCTAAAGGAGTGAGATTGAGTGATGAGAAATCTAATGTG 1260
|||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 1201 TTGAGTTATATGGTGAAGATTCCTAAAGGAGTGAGATTAAGTGATGAGAAACCGAATGTT 1260
Query 1261 AGAAAATGGGTGGTGGGATTAGTTGGAGGTATTGATGGTTTTGTGATTTTGTTGCTTATT 1320
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 AGAAAATGGGTTGTGGGATTAGTTGGAGGTATTGATGGTTTTGTGATTTTGTTGCTTCTT 1320
Query 1321 TCTGGATTTGCTTTTTATTTCATTCGGAAGCGACGGAAAAGCTTGTTACTGCCGCCACCG 1380
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 TCTGGATTTGCTTTTTATTTCATTCGGAAGCGACGGAAAAGCTTGTCACTGCCGCCACCT 1380
Query 1381 CCACCGCCACC 1391
||||||| |||
Sbjct 1381 CCACCGCTACC 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5