BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51720.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485526 jgi|Araly1|485526|fgenesh2_kg.5__1518__AT3G51720.1 1766 0.0
> Ahg485526 jgi|Araly1|485526|fgenesh2_kg.5__1518__AT3G51720.1
Length=1400
Score = 1766 bits (956), Expect = 0.0
Identities = 1238/1364 (91%), Gaps = 59/1364 (4%)
Strand=Plus/Plus
Query 1 GAAAACAACAACAGTTTTGATCACTCTGTCTCTCTTACTCTATCTTCTTCCCAAGTTCTT 60
||||||||||||||||||||||||||| ||||| ||| || ||||||||||||
Sbjct 1 GAAAACAACAACAGTTTTGATCACTCTCTCTCT-TTA--CT-TCTTCTTCCCAA------ 50
Query 61 GTCTTTTGATGGCCGAAACCCTAGAACCCTCCCTCGTCGGGGAAATCGACACTTCTGCGC 120
| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 51 G-CTTTTGATGGCCGAGACCCTAAAACCCTCCCTCGTCGGGGAAATCGACACTTCTGCGC 109
Query 121 CTTTCGAGTCCGTGAGAGAAGCCGCCACTCGCTTTGGTGGATTTGGTTTCTGGAAACCTT 180
| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 110 CATTCGAGTCGGTGAGAGAAGCCGCCACTCGTTTTGGCGGATTTGGTTTCTGGAAACCTT 169
Query 181 CTTCCCTTAACATCTCCGAAGCTTCTCAGAACGAAGT---TG--GTA--TGGT-T--T-- 228
|||||||||||||||| |||||||||||||||||||| || ||| |||| | |
Sbjct 170 CTTCCCTTAACATCTCTGAAGCTTCTCAGAACGAAGTGGATGACGTAGCTGGTATGGTGG 229
Query 229 TGAAAGCGAGTGAGTTAGAGAAGGAACTGATTGAGAAAGAAGGAGAAACTTTGAAGGTGT 288
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 230 CGAAAGCGAGTGAGTTAGAGAAGGAACTGATTGCTAAAGAAGGAGAAACTTTAAAGGTGT 289
Query 289 TGAAGTCACTTGAGTCGACCAAAGCCATTGTTGAAGAGCTCAAATCAAAGATACAGAACA 348
|||||||||| ||||| |||||||| || ||||||||||| ||||||||| |||| ||||
Sbjct 290 TGAAGTCACTCGAGTCCACCAAAGCTATCGTTGAAGAGCTTAAATCAAAGCTACAAAACA 349
Query 349 AGGAGGATAAAGAAAATTGTGACATGAATGTTTTCAAGGAATTGAACCAAGCAAAGATGA 408
|||| || |||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 350 AGGAAGAGAAAGAAAACTGTGACATGAATGTTTTCAAGGAATTGAAACAAGCGAAGATGA 409
Query 409 ATCTGTGCAAGACGACAAAAGATTTGGCTGCTATTCGCGTGTCTGTTGGGTTACTAAACA 468
||||||||||||| || ||||||||||| |||||||| | |||||||| |||||| ||||
Sbjct 410 ATCTGTGCAAGACAACTAAAGATTTGGCAGCTATTCGTGAGTCTGTTGAGTTACTGAACA 469
Query 469 AGAGATTGGAAGAGGAAAGAGCTGCACTTGAGAAGACACGAGAGAGACTAAACTCTGAGA 528
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGAGACTGGAAGAGGAAAGAGCTGCACTTGAGAAGACACGAGAGAGACTAAACTCTGAGA 529
Query 529 ATGCAGCTGAAATGTCCATGGAGATTCAGAGACTAAGTTATGAAGCTAAGGAATTTAGTA 588
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 530 ATGCAGCTGAAATGTCCAAGGAGATTCAGAGACTAAGTTATGAAGCTAAGGAGTTTAGTA 589
Query 589 GAACAGGAGAGAATGTTCGGTATGCGGTTAATAAAGCTGTGGCTGAGATTGAACAAACGA 648
||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 590 GAACAGGAGAGAATGCTCGTTATGCGGTTGATAAAGCTGTGGTTGAGATTGAACAAACGA 649
Query 649 GAAACAAGATTGAAGCTGCTGAGATGCGTTTGATCGCTGCTAGAAAGATGAAGGAAGCTG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GAAACAAGATTGAAGCTGCTGAGATGCGTTTGATCGCTGCTAGAAAGATGAAGGAAGCTG 709
Query 709 CTAGAGCGGCTGAAGCAGTTGCAATCGCTGAAATCAAGGCGGTTACaagaagaggaagaa 768
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 710 CTAGAGCGGCTGAAGCAGTTGCAATCGCTGAAATCAAGGCCGTTACTAGAAGAGGAAGAA 769
Query 769 ggagaagaagaggaggaaatggtgaggagactatgcaggaggagaTTCTTGAGACGATTG 828
| ||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 770 GAAGAAGAAGAAGAGGAAATGATGATGAGACGCTGCAGGAGGAGATTCTTGAGACGATTC 829
Query 829 ATGAAACAGCAAGAGAAATCAGAAGCAGTAGGAGGACACTTGAAGAAGGTTTGGCCAAA- 887
| ||||| || |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 830 AAGAAACCGCGAGAGAAATCAGAAGCAGTAGGAGGACACTTGAGGAAGGTTTGGAGAAAG 889
Query 888 --A-T-----G---G---AAGCAGAAGAAGGAAATTGGTGGTGGACAGAACAGAGGAGGA 933
| | | | |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 890 TGAATATTACGAAAGTGGAAGCAGAAGAAGGAAAATGGCGGTGGACAGAACAGAGGAGGA 949
Query 934 GATCATCATGTTCGGCTAAGTTCAAGAACCCTCCTTATATGATGGATGTAAAAGGTCTGA 993
|||||||||||||| | ||||||||||||||| || ||||||||||||||| ||||| |
Sbjct 950 GATCATCATGTTCGTCCAAGTTCAAGAACCCT--TT-TATGATGGATGTAAATGGTCTAA 1006
Query 994 ATATGATGATGAATGGTGATGGGACATCATCCTCAGTTGCTGTCTTGAAACCAACAATGT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ATATGATGATGAATGGTGATGGGACATCATCCTCAGTTGCTGTCTTGAAACCAACAATGT 1066
Query 1054 CTATTGGGCAGATACTTAGTAGGAAACTACTTCTTGCTGATGAGTCAGCGATGATGATGA 1113
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1067 CGATTGGGCAGATACTTAGTAGGAAACTACTTCTTGCGGATGAGTCAGCGATGATGATGA 1126
Query 1114 ATGGGAGAGTTTCGTTGGGTCAGATTCTTGGAAAGACTAACTTTGGAGATAGA---G--- 1167
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1127 ACGGGAGAGTTTCGTTGGGTCAGATTCTTGGAAAGACTAACTTTGGAGATAGAAATGGTG 1186
Query 1168 A-G--AAGGA-AA--AAA---GGTTCAATGGGAAGAGGAAGCGGTTCGGATTCGCAAACT 1218
| | ||||| || ||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 1187 AAGGGAAGGAGAAGGAAAAAAGGTTGAATGGGAAGAGGAAGCGGTTTGGATTCGCAAACT 1246
Query 1219 TGTCTGTGATGTTAAATAaagagagtaagaagaagaataagaagaagaagaTAGCTTTGA 1278
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TGTCTGTGATGTTGAATAAAGAGAGTAAGAAGAAGAATAAGAAGAAGAAGATAGCTTTGA 1306
Query 1279 ACTTAA-GT--TGTTAAAAGAGTGATTGAAATGGTCTAATCTTT 1319
|||||| || |||||||| ||||||| ||||||||||||||||
Sbjct 1307 ACTTAATGTGATGTTAAAAAAGTGATTAAAATGGTCTAATCTTT 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5