BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51740.1
Length=2919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485528 jgi|Araly1|485528|fgenesh2_kg.5__1520__AT3G51740.1 4333 0.0
> Ahg485528 jgi|Araly1|485528|fgenesh2_kg.5__1520__AT3G51740.1
Length=2889
Score = 4333 bits (2346), Expect = 0.0
Identities = 2737/2921 (94%), Gaps = 46/2921 (2%)
Strand=Plus/Plus
Query 1 ATAATTAGTCTTTTGCTACAACACTCACTCACTCACTTATTTCCATTACCTCTCTCACTA 60
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 1 ATAATTAGTCTTTTGCTACAACACTCACTCACTCACTT-GTT-CATTTCCTCTCTCACTA 58
Query 61 AAAATCAAAC-T-T-T-TCTCTGTCTC-A-CTC--TCTCC-AAAAACAGAGGAAGGAGAA 111
|||||||| | | | | ||||| |||| | ||| ||||| |||||||||||||| ||||
Sbjct 59 AAAATCAATCTTCTCTCTCTCTCTCTCTATCTCTATCTCCAAAAAACAGAGGAAGCAGAA 118
Query 112 CAAACCAAGAACTCAAGCTCCCCTGCtcttctcatctttcttcttcgttttcta-ttttc 170
||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 119 CAAACCAAGAACTCAAGCT-CCCTGCTCTTCTCATCTTTCTTCTACGTTTTCTATTTTTT 177
Query 171 tttcttctttattctttgattcttttGAAATGAATCATCTTTACAAAAACCCATTTCGCA 230
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 TTTCTTCTTTACTCTTTGATTCTTTTGAAATGAATCATCTTTACAAAAACCCATTTCGGA 237
Query 231 TTTATGAAATTAGTTTCCATTTCTGCGCGAGTCTACTCTTGTGTTTCTTACTCTTCTCTG 290
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 238 TTTATGAAATTAGTTTCCATTTCTGCATGAGTCTCCTCTTGTGTTTCTTACTCTTCTCTG 297
Query 291 CTCA-AGCTGTTGCAGGTGGTGGAGGTGGTGGTCACTCTTGGGATGGAATCGTGGTGACT 349
|| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 CT-AGAGCTGTTGCAGGTGGTGGTGGTGGTGGTCACTCTTGGGATGGAATCGTGGTGACT 356
Query 350 CAGGCGAACTATCAGGCACTCCAAGCTATCAAACACGAACTCATTGACTTCACCGGAGTT 409
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 CAGGCGAACTATCAGGCACTCCAAGCAATCAAACACGAACTCATTGACTTCACCGGAGTT 416
Query 410 CTCAAAAGCTGGAACAACTCTGCCTCCTCTCAAGTTTGCTCCGGCTGGGCTGGAATCAAA 469
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 CTCAGAAGCTGGAACAACTCTGCCTCCTCTGAAGTTTGCTCCGGCTGGGCTGGAATCAAA 476
Query 470 TGCCTCCGAGGTCAAGTGGTCGCCATTCAGCTCCCTTGGAAGGGACTTGGCGGTACTATC 529
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 477 TGTCTCCGAGGTCAAGTGGTCGCCATTCAGCTCCCTTGGAAGGGACTTGGTGGCACTATC 536
Query 530 TCTGAGAAGATTGGACAGCTTGGAAGTCTCAGAAAACTTAGCCTCCACAACAATGTTATC 589
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 537 TCCGAAAAGATTGGACAGCTTGGGAGTCTCAGAAAACTTAGCCTCCACAACAATGTTATC 596
Query 590 GCCGGTTCGGTTCCTCGTTCCCTTGGCTACCTCAAGAGCCTCCGTGGAGTCTATCTCTTC 649
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 597 GCCGGTTCGGTTCCTCGTTCCCTTGGCTACCTCAAGAGCTTGCGTGGAGTCTATCTCTTC 656
Query 650 AACAATCGTCTCTCGGGTTCCATCCCAGTCTCACTGGGTAACTGCCCTCTTCTCCAGAAT 709
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 AACAATCGCCTCTCCGGTTCCATCCCAGCCTCACTGGGTAACTGCCCTCTTCTCCAGAAT 716
Query 710 CTTGATCTCAGCAGTAACCAGCTAACTGGAGCCATCCC-GCCTAGCCTTACTGAATCCAC 768
|||||||| |||||||||||||||||||||| |||||| || ||| ||| ||||||||||
Sbjct 717 CTTGATCTTAGCAGTAACCAGCTAACTGGAGTCATCCCAGC-TAGTCTTGCTGAATCCAC 775
Query 769 GAGGCTCTATAGGCTCAATCTCAGCTTCAATTCACTTTCCGGTCCCCTTCCGGTTAGTGT 828
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 GAGGCTCTATAGGCTCAACCTCAGCTTCAATTCACTGTCCGGTCCCCTTCCGGTTAGTGT 835
Query 829 AGCCAGATCATATACCCTCACTTTTCTTGATCTTCAGCATAACAACCTATCTGGTTCGAT 888
||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 836 AGCCAGAGCATATACCCTCACTTTTCTCGATCTTCAGCATAACAACCTCTCTGGTTCGAT 895
Query 889 ACCTGACTTTTTCGTCAATGGCTCCCACCCTCTCAAAACGCTGAATCTTGACCACAATCG 948
||| |||||||| || |||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 896 ACCCGACTTTTTGGTTAATGGCTCCCACCCTCTCAAAACGATGAATCTTGACCATAATCT 955
Query 949 CTTCTCTGGAGCTGTTCCAGTGTCTCTCTGCAAGCATAGTCTGTTGGAAGAGGTTTCTAT 1008
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 956 CTTCTCTGGAGCTGTTCCTTTGTCTCTCTGCAAGCATGGTCTGTTGGAAGAGGTTTCTTT 1015
Query 1009 AAGCCATAACCAGCTCTCAGGTTCTATTCCCAGAGAATGTGGAGGTCTTCCACACCTCCA 1068
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1016 AAGCCATAACCAGCTCTCAGGTTCTATTCCCAGAGAATGTGGAGCTCTTCCACACCTCCA 1075
Query 1069 GAGCCTGGATTTCTCTTACAATTCAATCAACGGAACCATCCCAGACAGTTTCTCCAACCT 1128
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAGCCTTGATTTTTCTTACAATTCAATCAACGGAACCATCCCAGACAGTTTCTCCAACCT 1135
Query 1129 TTCATCTCTAGTTTCACTAAATCTCGAAAGCAACCACCTCAAAGGCCCAATCCCAGATGC 1188
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TTCATCTCTGGTTTCACTAAACCTCGAAAGCAACCACCTCAAAGGCCCAATCCCAGATGC 1195
Query 1189 CATTGATAGACTTCACAACCTGACAGAGCTTAACCTGAAGAGAAACAAGATCAATGGGCC 1248
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1196 CATTGATAGACTGCACAACCTGACAGAGCTTAACCTCAAGAGAAACAAGATCAATGGGCC 1255
Query 1249 AATCCCAGAAACAATAGGGAACATATCTGGAATCAAAAAGCTTGATCTGTCAGAAAACAA 1308
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1256 AATCCCAGAGACAATAGGGAACATATCTGGAATCAAACAGCTTGATCTGTCAGAAAACAA 1315
Query 1309 CTTCACAGGTCCAATCCCGCTCTCACTAGTCCACCTGGCGAAGCTTTCTTCATTCAACGT 1368
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1316 CTTCACAGGTCCAATCCCGCTGTCACTAGTCCACCTGGCGAACCTTTCTTCATTCAACGT 1375
Query 1369 CTCCTACAACACCCTCTCTGGTCCTGTTCCACCTGTCCTCTCCAAGAAGTTCAACTCAAG 1428
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1376 CTCCTACAACACCCTCTCTGGTCCTGTTCCACCTATTCTCTCCAAGAAGTTCAACTCAAG 1435
Query 1429 CTCTTTCTTGGGCAACATCCAGCTTTGTGGCTACAGCTCCTCAAATCCATGCCCTGCTCC 1488
||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1436 CTCTTTCGTGGGGAACATTCAGCTCTGTGGCTACAGCTCCTCAAATCCATGCCCTTCTCC 1495
Query 1489 TGATCAC-CACCATCCCCTCACCCTTTCACCTACCTCATCACAAGAACCAAGAAAACACC 1547
| | | || ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1496 AAAAC-CTCATCATCCACTCACCCTTTCACCGACCTCATCACAAGAACCAAGAAAACACC 1554
Query 1548 ACCACAGAAAACTCTCAGTGAAAGACGTAATCCTAATCGCCATCGGAGCTCTTCTAGCCA 1607
|| | |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1555 AC-A--GAAAACTCTCTTTGAAAGACATAATCCTAATCGCCATCGGAGCTCTTCTAGCCA 1611
Query 1608 TCCTCCTTCTACTATGCTGCATACTCCTCTGCTGCCTGATCAAGAAACGCGCCGCCTTGA 1667
|||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1612 TCCTCCTTGTATTATGCTGCATACTCCTCTGCTGTCTGATCAAGAAACGAGCCGCCTTGA 1671
Query 1668 AACAAAAAGATGGAAAGGACAAGACCTCAGAGAAGACAGTATCAGCAGGTGTCGCAGGAA 1727
||||||||||||||||||||||||| ||||||||||||||| | |||| || | |
Sbjct 1672 AACAAAAAGATGGAAAGGACAAGACATCAGAGAAGACAGTAACTGCAGCTG-CT--G--- 1725
Query 1728 CAGCATCAGCAGGAGGTGAAATGGGAGGCAAGCTAGTCCATTTCGATGGTCCGTTCGTGT 1787
|| ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1726 CA---TCAGCTGGAGGTGAAATGGGAGGAAAGCTGGTTCATTTCGATGGTCCGTTCGTGT 1782
Query 1788 TCACCGCCGATGATCTGCTCTGTGCCACAGCTGAGATCATGGGGAAAAGTACATATGGCA 1847
|||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 1783 TCACAGCCGATGATCTCCTCTGTGCCACAGCTGAGATCATGGGGAAAAGCACTTACGGCA 1842
Query 1848 CAGCATACAAGGCCACATTAGAAGACGGCAATGAAGTCGCTGTGAAGCGTCTGAGAGAGA 1907
|||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct 1843 CAGCATACAAAGCCACATTGGAGGACGGTAATGAAGTCGCTGTGAAGCGTCTAAGAGAGA 1902
Query 1908 AAACAACAAAAGGAGTCAAAGAATTCGAAGGAGAAGTCACAGCTTTAGGCAAGATTCGTC 1967
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1903 AAACAACCAAAGGAGTCAAAGAGTTCGAAGGAGAAGTCACAGCTTTAGGCAAGATTCGTC 1962
Query 1968 ATCAGAATCTTCTTGCACTAAGAGCTTACTACTTAGGACCTAAAGGAGAGAAGCTTCTCG 2027
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1963 ACCAGAATCTTCTTGCACTAAGAGCTTACTACTTAGGACCTAAAGGAGAGAAGCTACTCG 2022
Query 2028 TCTTTGATTACATGTCTAAAGGAAGCCTCTCTGCATTTCTTCACGCTCGAGGACCAGAAA 2087
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2023 TCTTTGATTACATGTCTAAAGGAAGTCTCTCTGCGTTTCTTCACGCTCGAGGACCAGAAA 2082
Query 2088 CCCTAATTCCGTGGGAAACAAGAATGAAGATAGCAAAAGGAATCAGTCGTGGTTTAGCTC 2147
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 CCCTAATTCCATGGGAAACAAGAATGAAGATAGCAAAAGGAATCAGTCGTGGTTTAGCTC 2142
Query 2148 ACCTTCACAGCAACGAGAACATGATCCATGAGAATCTCACAGCAAGCAACATTCTCCTCG 2207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 ACCTTCACAGCAACGAGAACATGATCCATGAGAATCTCACAGCAAGCAACATTCTCCTCG 2202
Query 2208 ACGAACAAACCAACGCACACATCGCCGATTACGGTCTCTCAAGACTCATGACCGCCGCCG 2267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2203 ACGAACAAACCAACGCACACATCGCCGATTACGGTCTCTCAAGACTCATGACCGCCGCCG 2262
Query 2268 CAGCAACAAACGTAATCGCAACCGCAGGAACATTAGGATACAGAGCACCGGAGTTTTCGA 2327
| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2263 CCGCCACAAACGTAATAGCAACCGCCGGAACATTAGGATACAGAGCACCGGAGTTTTCGA 2322
Query 2328 AAATCAAAAATGCAAGCGCTAAGACCGATGTCTACAGCTTAGGAATCATCATATTGGAGC 2387
| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2323 AGATCAAAAACGCAAGCACTAAGACCGATGTCTACAGCTTAGGGATCATCATATTGGAGC 2382
Query 2388 TTTTGACTGGGAAATCTCCAGGAGAGCCGACGAATGGGATGGATTTGCCACAATGGGTAG 2447
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2383 TTTTGACTGGGAAATCTCCAGGAGAGCCGACGAATGGGATGGATTTGCCTCAATGGGTAG 2442
Query 2448 CTTCGATTGTGAAAGAAGAGTGGACTAATGAAGTTTTTGATTTGGAGCTGATGAGAGAGA 2507
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2443 CTTCGATTGTGAAAGAAGAGTGGACTAATGAAGTTTTTGATCTGGAGCTCATGAGAGAGA 2502
Query 2508 CACAAAGCGTTGGTGATGAGCTTTTGAATACTTTGAAATTGGCTTTACATTGTGTTGATC 2567
| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2503 CTCAAAGCGTTGGTGATGAGCTTTTGAATACTCTGAAATTAGCTTTACATTGTGTTGATC 2562
Query 2568 CGTCGCCGGCGGCGAGGCCAGAAGCTAATCAGGTGGTGGAGCAGTTGGAGGAGATTAGGC 2627
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 2563 CGTCGCCGGCGGCGAGGCCAGAAGCTAATCAGGTGGTGAATCAGTTGGAGGAGATTAAGC 2622
Query 2628 CGGAGACTGAAGTGGAGACGGAGACGACGCCGTTTGGATCTGGTGGTGAAGGAGGTAAAG 2687
|||||||||||| ||||| ||||||||||| | |||||||||||||||||||||| ||||
Sbjct 2623 CGGAGACTGAAGCGGAGATGGAGACGACGCTGATTGGATCTGGTGGTGAAGGAGGAAAAG 2682
Query 2688 ATTTAGGGTCAAATGAGGAGTAAAGGAAAGTTTTGGGGTTTATGTGAAAGAGAATAAAGA 2747
||||||||||||| ||||| |||||||||||||||||| | | || | || |||||
Sbjct 2683 ATTTAGGGTCAAACGAGGATTAAAGGAAAGTTTTGGGG---A-G--AAT-A-AA-AAAGA 2733
Query 2748 AGAAGGGACCGATATACAAATACCACATTTAT-ATTTTCATTGTTTATTCTTTGATTCAG 2806
|| || ||| ||||||||||||||||||| | ||||||||| | |||||||||||||
Sbjct 2734 AG--GG-ACCTATATACAAATACCACATTTTTTATTTTCATTAAT-ATTCTTTGATTCAA 2789
Query 2807 GTAATTTGTAGATAAAAATGGTTTGAAGTTTGGGCTAGTAATGTAATGTAATTTGATTAT 2866
|||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2790 GTAAAT-GTAGATAAAAATGGTTTGAAGTTTGTGCTAGTAATGTAATGTAATTTGATTAT 2848
Query 2867 TCATTCTTTTTTGGTTGAAGAAGTAATACGAGAATTGATTT 2907
||||||||||||| ||||||||||||||| | |||||||||
Sbjct 2849 TCATTCTTTTTTGTTTGAAGAAGTAATACAATAATTGATTT 2889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110195078785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5