BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G51750.1

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg348272 jgi|Araly1|348272|fgenesh1_pg.C_scaffold_5001664           446    1e-124


> Ahg348272 jgi|Araly1|348272|fgenesh1_pg.C_scaffold_5001664
Length=342

 Score =  446 bits (241),  Expect = 1e-124
 Identities = 312/344 (91%), Gaps = 13/344 (4%)
 Strand=Plus/Plus

Query  28   ATGGAAGAAGACGTTCCAGAAGCAGAGAAGCTCATGTGTCCaaaagaagtcgtagaaaag  87
            |||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  1    ATGGAAGAAGGCGTTCCAGAAGCAGAGAAGGTCGTGTGTCCAAAAGAAGTCGTAGAAAAG  60

Query  88   aacaaagataaacaag-a--agaagaagaagacgagaaagGAGCTAAAGGTGGGATTTTG  144
            |||||||||||||||| |  |||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AACAAAGATAAACAAGAACTAGAAGAAGAAGAAGAGAAAGGAGCTAAAGGTGGGATTTTG  120

Query  145  AACAATCTGATATCCAATTTTATGGATTGTA-CAACAACAACA---GTAGAGGGAAAATC  200
            ||||||||||||||||| ||||||||| | | |||||||||||   | ||||||||||||
Sbjct  121  AACAATCTGATATCCAACTTTATGGAT-GCAACAACAACAACAACAGCAGAGGGAAAATC  179

Query  201  TAGTGAAAACATTCAGAAATCTCTA-TGTGAAGATGAAGATGAGAAGGAACAAGAGAGC-  258
            | || |||||||||| |||| |  | |||||||||||| |||| |||||| |||||||| 
Sbjct  180  TGGTAAAAACATTCAAAAAT-TAGAATGTGAAGATGAAAATGACAAGGAAAAAGAGAGCT  238

Query  259  C--CAAGTGTTGGAATCTTAGAGAAGATTATTTCTCATCTGCCAGAAGACGTAGCTCCAA  316
            |  ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  239  CATCAAGTGTTGGAGTCTTAGAGAAGATTATTTCTCATCTGCCAGAAGACGCAGCTCCAA  298

Query  317  CAACAGACGAGGCAGCCATTTTGATCCACTCGGCGATTGACTGA  360
            ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  299  CAACAGAGGAGGCAGCCATTTTGATCCACTCTGCGATTGACTGA  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20565862471


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5