BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51760.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938039 jgi|Araly1|938039|scaffold_502230.1 1181 0.0
> Ahg938039 jgi|Araly1|938039|scaffold_502230.1
Length=814
Score = 1181 bits (639), Expect = 0.0
Identities = 749/802 (93%), Gaps = 8/802 (1%)
Strand=Plus/Plus
Query 89 CTCAGATGATTTTGTATCTTACGGTTGAAGAAATGATGGATATTAACCGATCCCGAAGAT 148
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 16 CTCAAATGATTTTGTATCTTACCGTTGAAGAAATGATGGATATTAACCGATCCCGAAGGT 75
Query 149 TGAACTTCAATGCTCCATTCTTGTCGACGAAGCGCCATGTCACCCAAGAGAAGCTTCCGG 208
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 76 TGAACTTCAATGCTCCATTCTTGTCGACGAAGCGCCATGTCAGCCAAGAGAAGCTTCCGG 135
Query 209 GCCAGTTTCCGGAAGCTTCTGTTCCATTTTGCTGGGAAACCGCTCCCGGGATGCCCAAGA 268
| ||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||
Sbjct 136 GTCAGTTTCCGGAAGCTTCCGTCCCGTTTTGCTGGGAGACCGCTCCCGGGATGCCCAAGA 195
Query 269 ACTCGTCTCATTTGAAAAATGACGCTGAATCTGAAACGCCCCGGCTCAAACTACCTCCTG 328
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 196 ACTCGTCTCATTTGAAAAATGACGCTGAATCCGAGACGCCCCGCCTCAAACTACCTCCTG 255
Query 329 GAAGACTGAAGGTGCAAGTTACTGGTAAAAATGATGATC-TTGATGACGCAAGTGAGAGT 387
||||| |||||||||| |||| |||| |||| || || | |||||||||| |||||||||
Sbjct 256 GAAGATTGAAGGTGCACGTTAATGGTGAAAACGACGA-CTTTGATGACGCCAGTGAGAGT 314
Query 388 TTAACACCAGCTAAATTGTTGCATATGAAGAAACGCAACAATCAGGAATATTTCCATCAA 447
||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 315 TTAACACCAGCTAGATTGTTGCATATGAAGAAACGCAACAATCACGAACATTTCCATCAA 374
Query 448 ACCAACCAAGACGCGGTCGATGTCTTGTCTCTCACGCAAGCTATAGACATGGTCGAACTC 507
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 375 ACCAACCAAGACACGGTCGATGTCTTGTCTCTCACGCAAGCCATAGACATGGTCGAACTC 434
Query 508 CCAAAAGATAGCGTTTCAGAATCAGATGATGATAGAAGCAGCGTAGGAGGTGACTCAAAC 567
||||||||||||||||| ||||| | |||| | ||||||| || |||||||||||||
Sbjct 435 CCAAAAGATAGCGTTTCGGAATC-G--GATG---GGAGCAGCGGAGCAGGTGACTCAAAC 488
Query 568 GGGTACTTAACAATGGAGAGCACAGAGCGAAGCGAAGATATGTCACCGAGTTACATAATA 627
|| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 489 GGCTACTTAACAATGGAAAGCACAGAACGAAGCGAAGACATGTCACCGAGTTACATAATA 548
Query 628 GAGCGGTTTCTACCGGATGCAGCGGCTCTAGCAGCCGTGACATCAGCGGCTAGCCAAAGG 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GAGCGGTTTCTACCGGATGCAGCGGCTCTAGCAGCCGTGACATCAGCGGCTAGCCAAAGA 608
Query 688 AGGAAGAAGAAGCTCTCTTATTTGAGTGGTGAAACGGTGAGACAGTCTTGTTTTTCACCA 747
||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 609 AGGAAGAAGAAGCTCTCTTATTTGAGTGGTGCAACCGTGAGGCAGTCTTGTTTTTCACCA 668
Query 748 AAAGCTTGTGGATTACATGTATTGCTGCCTTGGAGCACTAAGCATAGAATCTGTGGCGTC 807
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 669 AAAGCTTGTGGCTTACATGTATTGCTGCCATGGAGCACTAAGCATAGAATCTGTGGCGTC 728
Query 808 AAAAACGCCTTTTCTCCATCTTCACACGTCCACTTGCAACCCAAGTTTATTACAAAAGAT 867
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 729 AAAAATGCATTTTCTCCATCTTCCCACGTCCACTTGCAACCCAAGTTTATTACAAAAAAT 788
Query 868 AACTAGATGAATTCAGGTACTT 889
|||||| || ||| ||||||||
Sbjct 789 AACTAGTTGGATTAAGGTACTT 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5