BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51780.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485533 jgi|Araly1|485533|fgenesh2_kg.5__1525__AT3G51780.1 1269 0.0
> Ahg485533 jgi|Araly1|485533|fgenesh2_kg.5__1525__AT3G51780.1
Length=970
Score = 1269 bits (687), Expect = 0.0
Identities = 806/860 (94%), Gaps = 21/860 (2%)
Strand=Plus/Plus
Query 103 TCTCATACTCCGATTCATTGTCGAAAAACGATGATGCATAATTCAACCGAAGAATCGGAA 162
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 TCTCATACTCCGATTCCTTGTCG-AAAACGATGATGCATAATTCAACCGACGAATCGGAA 59
Query 163 TGGGAGGTGAGACCTGGTGGTATGCTCGTCCAACGAAGAGACGACGCCGCTTCCTCCGAC 222
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 TGGGAGGTGAGACCTGGTGGTATGCTCGTCCAACGAAGAGACGACACCGCTTCCTCCGA- 118
Query 223 CACAAACCTCTCCAGGATCCCGACTCTGCTTCCGCCGCTTTTGCTCAAACCATCAGAATC 282
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 C-C-AACCTCTCCAGGATCCCGACTCTGCTTCCGCCGCTTTTGCTCAAACCATCAGAATC 176
Query 283 ACTGTTTCTCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGGG 342
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACTGTTTCTCATGGCTCATCCCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGGG 236
Query 343 GATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAATTGAAGATCTTG 402
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 237 GATGTGAAGAAAGCCCTTGTTCAAAAAACTGGGTTGGAAGCTAGTGAATTGAAGATCTTG 296
Query 403 TTCAGAGGAGTTGAGAGAGATGATGCTGAACAATTGCAAGCTGCTGGTGTTAAGGATGCG 462
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCAGGGGAGTTGAGAGAGATGATGCTGAACAATTGCAAGCTGCTGGTGTTAAGGATGCG 356
Query 463 TCTAAGCTTGTTGTTGTTGTTGAGGATACGAATAAGAGAGTGGAAC-------A-A-CAG 513
||||||| ||||| | |||||||||||||||||||||||||||| | | |||
Sbjct 357 TCTAAGC---TTGTTCTCGTTGAGGATACGAATAAGAGAGTGGAACAAGTTGAACAGCAG 413
Query 514 CCTCC--T-GTGGTAACTAAAGAGATGGAAAAAGCTATTGCTGCTGTTAACGCGGTTACA 570
||||| | |||||||| |||||||||| ||||||||||||||| || |||||||||
Sbjct 414 CCTCCTGTGGTGGTAACCAAAGAGATGGCAAAAGCTATTGCTGCACTTGTTGCGGTTACA 473
Query 571 GGAGAGGTCGATAAGCTCTCGGATAGAGTTGTTGCTTTAGAAGTTGCTGTGAATGGAGGG 630
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 474 GGAGAGGTCGATAAGCTCTCGGACAGGGTCGTTGCTTTAGAAGTTGCTGTGAATGGAGGG 533
Query 631 ACGCAA-GTTGCGGTGCGGGAGTTTGACATGGCTGCAGAGCTTCTTATGAGGCAGCTGCT 689
||| || |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 534 ACG-AACGTTGCGGTGCGGGAGTTTGACATGACTGCAGAGCTTCTCATGAGGCAGTTGCT 592
Query 690 CAAATTGGATGGCATTGAGGCTGAAGGGGACGCTAAAGTACAGCGTAAGGCTGAGGTACG 749
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 593 CAAATTGGATGGCATTGAGGCTGAAGGGGAAGCTAAAGTACAGCGTAAGGCAGAGGTACG 652
Query 750 TAGAATCCAAAACTTGCAGGAGGCTGTGGATAAGTTGAAGGCAAGATGTTCAAATCCGTT 809
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 653 TAGGGTCCAAAACTTGCAGGAGATTGTGGATAAGTTGAAGGCAAGATGTTCAAATCCGTT 712
Query 810 TGTGGATCAGAGCAAAGCTGCAGCTGTAAGCACTGAGTGGGAATCGTTCGGAAACGGTGT 869
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 713 TGTGGATCAGAGCAAAGCCGCAGCTGTAAGCACTGAGTGGGAATCATTCGGAAACGGTGT 772
Query 870 CGGAAGCTTGAACCCTCCTCCGCCAGCTTCGCCTTCGGCCAATGTAACTCAAGATTGGGA 929
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 GGGAAGCTTGAACCCTCCTCCGCCAGCTTCGCCTTCAGCCAATGTAACTCAAGATTGGGA 832
Query 930 GAAATTTGACTGACATTTTA 949
||||||||||||||||||||
Sbjct 833 GAAATTTGACTGACATTTTA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5