BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51790.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485534 jgi|Araly1|485534|fgenesh2_kg.5__1526__AT3G51790.1 1567 0.0
> Ahg485534 jgi|Araly1|485534|fgenesh2_kg.5__1526__AT3G51790.1
Length=1159
Score = 1567 bits (848), Expect = 0.0
Identities = 1076/1179 (91%), Gaps = 43/1179 (4%)
Strand=Plus/Plus
Query 1 ATTTTTCCAGAAAACCCCATAAA-C-C-TCTCGC--TCTCGGGAATTTGATTGATTCCCA 55
||||||||||||||||||||||| | | |||| | |||| |||||||||||||||||||
Sbjct 1 ATTTTTCCAGAAAACCCCATAAACCTCTTCTCACTTTCTCCGGAATTTGATTGATTCCCA 60
Query 56 CGAGGAAAAATCAATCTTCCCGGAAAATGGCAGCTAGGTTATTGTTCCGTCGAAGTTCTC 115
||| | || || |||||||| ||||| || |||||||||||||||||||
Sbjct 61 CGA-G---AA--AA---------AAAATGGCGGCTAGATTGTTGTTCCGTCGAAGTTCTC 105
Query 116 AAATCCTCCGATCAATTCAACGAAATCCTCAAATCTCATCGTCATTCGAATCACCACCTT 175
||||||||||||| |||||| ||||||||||||||||||| |||||||||| | ||||
Sbjct 106 AAATCCTCCGATCTATTCAAAGAAATCCTCAAATCTCATCATCATTCGAAT---CTCCTT 162
Query 176 GCCCGATTTTTCACTCATTGACCACCGCCTCACCAGATCCATCGCGATTATCATCCTTAA 235
|||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 163 CCCCGATTTTTTATTCATTGACCACCGCTTCACCAGATCCATCGCGATTATCATCCTTAA 222
Query 236 CCTTCCTCCGATCTCTCTCCATCGCTCGTCGCGGTCCAACACGTCCTAAGAAAATCGATA 295
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 223 CCTTCCTCCGATCTCTCTCCATCGCTCGTCGTGGTCCAACGCGTCCTAAGAAGATCGATA 282
Query 296 TCGGAGCCAAAGCGCGTCAGATGCAGAATCGCCGTTTATGGACCTACGCGCTAACCTTCA 355
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 283 TAGGAGCCAAAGCGCGTCAGATGCAGAATCGCCGTTTGTGGACCTACGCTCTAACCTTCA 342
Query 356 GCTGCATCGCCGGATTCGTAGTTATCGTCCTTAACCAATTTCAGGATCAGCTTGTCTTCT 415
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 343 GCTGCATCGCCGGATTCGTAGTTATCGTCCTCAACCAATTCCAGGATCAGCTCGTCTTCT 402
Query 416 ACCTAACGCCATCAGACGCTATGGAGAAATTCGCAGAGAATCCAACAAAGAACAAATTCA 475
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 403 ACCTAACGCCATCTGACGCTATGGAGAAATTCGCAGAGAATCCAACCAAGAACAAATTCA 462
Query 476 GACTCGGTGGTTTGGTTCTAGAAGGTAGCGTTGCGCAGCCGGCGGCGTCACAGGAGATGG 535
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 463 GACTCGGTGGTTTGGTTCTAGAAGGTAGCGTTGCGCAACCGGCGGCGTCACAGGAGATGG 522
Query 536 AGTTTGTGATCACTGATCTGATCACTGATATTTTGGTTAGGTATAAAGGATCTTTGCCGG 595
| ||||||||||| |||||||| || |||||||||||||| || ||||||||||||||||
Sbjct 523 AATTTGTGATCACCGATCTGATTACAGATATTTTGGTTAGATACAAAGGATCTTTGCCGG 582
Query 596 ATCTGTTTAGGGAAGGTCATTCAGTTGTGGTTGAAGGATTCATTAAGCCGTATACAGATG 655
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 583 ATCTGTTTAGGGAAGGTCACTCAGTTGTTGTTGAAGGATTCATTAAGCCGTATACGGATG 642
Query 656 AAGTAAGGAAGGAAGTTTCTACAAAACCTATTTCGAAGAAAGCTAGGAACCTCGATTGTT 715
|||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 643 AAGTGAGGAAGGAAGTTTCTACAAAACCTGTTTCGCAGAAAGCTAGGAATCTCGATTGTT 702
Query 716 TCTTCTCGGCGACTGAAGTTTTGGCTAAGCATGATGAGAAGTATATGCCACAGGAAGTTG 775
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 703 TCTTCTCGGCGACGGAAGTTTTAGCTAAGCATGATGAGAAGTATATGCCACAGGAAGTTG 762
Query 776 CGGCGGCGATTGAGAAGAATAAGAAAATTATTGAAGCGGCGGCG------ACTGAACAAG 829
||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 763 CGGCGGCGATTGAAAAGAATAAGAAGATTATTGAAGCAGCGGCGGGGGCCACTGAACAAG 822
Query 830 CTGCTGAAGTTGCGGCTTCTTAGATTGGTATAAACTTCATTCTTTTT-AAGTTAATCAAA 888
|||||||||| | |||||||||| ||||||||||||||||||||||| ||||| ||| ||
Sbjct 823 CTGCTGAAGTAGTGGCTTCTTAGTTTGGTATAAACTTCATTCTTTTTTAAGTTTATCGAA 882
Query 889 ATTTTCCCCAAGTTCGAGCTTTTGGTGAGTATT---GTTCATCTTATAAGGTTATATTTG 945
|||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||
Sbjct 883 TTTTTCCCCAAGTTCGAGCTTTTGGTGGGTATTATTGTTCATCTTATAATGATATATTTG 942
Query 946 ATTATAGTTTCTGGAAAA-GAGTAGGAAGATTGGAATG-TTATATTCCTGGAAAACAGAG 1003
|||||||||| ||||||| || |||||||||||||||| || ||||||||||||||||||
Sbjct 943 ATTATAGTTTTTGGAAAAAGACTAGGAAGATTGGAATGGTT-TATTCCTGGAAAACAGAG 1001
Query 1004 ATTTGATTTTTGAGTCTATTTGAGAATTAAGTGGAGAAATGTGAT-A--CAC--TATACA 1058
|||||||||| |||||||||||||||||| | ||||||||||||| | ||| ||||||
Sbjct 1002 ATTTGATTTT-GAGTCTATTTGAGAATTAGGAGGAGAAATGTGATGATACACACTATACA 1060
Query 1059 ATAGCTTTGTTTGATTCCACAAAGCTATAAGCTAATCTACTTTCTTGTTGTGTTGATCAA 1118
|||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1061 ATAGTTTTGTTTGATCCCACAAAGCTATAAGCTAATCTACTTTCTTGTTATGTTGATCAA 1120
Query 1119 ATAAAGAA-CACTTTGACGAGGGATCAAATATGCTGCTT 1156
|||||||| ||||||||||||||||||||| ||||||||
Sbjct 1121 ATAAAGAAACACTTTGACGAGGGATCAAATTTGCTGCTT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5