BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51800.2
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938043 jgi|Araly1|938043|scaffold_502234.1 1779 0.0
Ahg891509 jgi|Araly1|891509|Al_scaffold_0007_3495 254 2e-66
Ahg933138 jgi|Araly1|933138|scaffold_401126.1 163 3e-39
> Ahg938043 jgi|Araly1|938043|scaffold_502234.1
Length=1223
Score = 1779 bits (963), Expect = 0.0
Identities = 1160/1249 (93%), Gaps = 38/1249 (3%)
Strand=Plus/Plus
Query 126 TCGAGAGTTATCAGAGATGAGTTCGGACGATGAGAGAGACGAGAAGGAGCTGAGTCTTAC 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 TCGAGAGTTATCAGAGATGAGTTCGGACGATGAGAGAGACGAGAAGGAGCTGAGTCTTAC 65
Query 186 CTCTCCTGAAGTCGTCACCAAGTACAAGAGCGCCGCTGAGATCGTTAACAAGGCGTTACA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 CTCTCCTGAAGTCGTCACCAAGTACAAGAGCGCCGCTGAGATCGTTAACAAGGCGTTACA 125
Query 246 GGTTGTTTTAGCTGAATGCAAACCAAAAGCTAAGATTGTTGATATCTGTGAGAAAGGAGA 305
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 126 GGTTGTTTTAGCTGAATGCAAACCAAAAGCTAAGATTGTTGACATCTGCGAGAAAGGAGA 185
Query 306 CT-CTTTTATTAAAGAGCAAACAGCAAGCATGTACAAGAATTCTAAGAAGAAGATTGAGA 364
| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 186 -TGCTTTTATCAAAGAGCAAACAGCGAGCATGTACAAGAATGCTAAGAAGAAGATTGAGA 244
Query 365 GAGGTGTTGCGTTCCCTACATGCATTTCTGTGAACAACACTGTTGGTCATTTTTCACCGC 424
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 245 GAGGTGTTGCTTTCCCTACATGCATTTCTGTGAACAACACTGTTGGTCATTTCTCACCGC 304
Query 425 TTGCTAGTGATGAGTCTGTGTTGGAAGATGGTGACATGGTTAAAATCGATATGGGATGTC 484
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 305 TTGCCAGTGATGAGTCTGTGTTGGAAGATGGTGATATGGTTAAAATTGATATGGGATGCC 364
Query 485 ATATTGATGGGTTCATTGCCCTTGTTGGTCACACACATGTTCTTCAAGAAGGGCCTCTTA 544
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 365 ATATTGATGGGTTCATTGCTCTTGTTGGTCACACACATGTTCTTCAAGAAGGGCCTGTTA 424
Query 545 GTGGGCGTAAGGCTGATGTTAT-CGCTGCCGCAAATACTGCAGCTGATGTTGCTCTAAGG 603
||||||||| ||||||||||| || |||||| |||||||||||||| |||||| | |||
Sbjct 425 CTGGGCGTAAAGCTGATGTTATTCG-TGCCGCTAATACTGCAGCTGACGTTGCTTTGAGG 483
Query 604 CTCGTACGTCCTGGAAAAAAGAACACTGATGTAACTGAAGCTATTCAGAAGGTAGCT-GC 662
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 484 CTCGTACGTCCTGGAAAGAAGAACACTGATGTAACTGAAGCCATTCAGAAGGTGGCTAG- 542
Query 663 AGCTTATGACTGCAAAATTGTTGAAGGTGTTCTTTCCCACCAGCTGAAACAGCATGTGAT 722
||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 543 AGCTTATGACTGCAAAATTGTTGAAGGGGTTCTTTCCCACCAGATGAAGCAGCATGTGAT 602
Query 723 AGATGGAAACAAGGTTGTGCTTAGTGTATCCAGCCCTGAAACAACTGTTGACGAAGTGGA 782
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 603 AGATGGAAACAAGGTTGTGCTAAGTGTATCGAGCCCTGAAACAACTGTTGACGAAGTGGA 662
Query 783 ATTTGAAGAGAATGAAGTCTATGCAATAGATATTGTGGCAAGTACTGGTGATGGCAAGCC 842
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 663 ATTTGAAGAGAATGAAGTCTATGCAATAGATATTGTGGCAAGCACTGGTGATGGCAAGCC 722
Query 843 AAAGCTATTAGACGAGAAGCAAACAACTATTTACAAGAAAGATGAAAGTGTTAACTATCA 902
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 723 AAAGCTATTAGACGAGAAGCAAACAACTATTTACAAGAAAGATGAGAGTGTTAACTATCA 782
Query 903 GTTGAAGATGAAGGCCTCCAGATTCATAATCAGCGAAATTAAACAGAACTTCCCCCGTAT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GTTGAAGATGAAGGCCTCCAGATTCATAATCAGCGAAATTAAACAGAACTTCCCCCGTAT 842
Query 963 GCCATTCACTGCAAGGTCACTGGAGGAGAAAAGGGCACGGCTTGGACTTGTGGAGTGTGT 1022
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 843 GCCATTCACTGCAAGGTCACTGGAGGAGAAAAGGGCTCGTCTTGGTCTTGTGGAGTGTGT 902
Query 1023 GAACCATGGTCATTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGGCTCATGTCGTTT 1082
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 903 GAACCATGGTCATTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGGGG-AT-T--TT- 957
Query 1083 TGGTTTTCTACCAGGGGATTTTGTTGCTCAGATTAAGTTCACAGTTTTGCTGATGCCAAA 1142
| || | |||| ||| ||| | ||| || || | |||||||||||
Sbjct 958 -G-TTG-C--CCAG---ATTAAGTT-CACAG-TT---TT----G-----CTGATGCCAAA 995
Query 1143 TGGATCAGATAGGATCACTTCACATACACTTCAGGAACTTCCTAAAAAGACCA-TCGAAG 1201
|||||| ||||||||||||||||||||||||||||| ||| || |||| | | ||||
Sbjct 996 TGGATCGGATAGGATCACTTCACATACACTTCAGGAGCTTGGTACTAAGATTAGT-GAAG 1054
Query 1202 ACCCTGAGATCAAAGGGTGGTTAGCTTTGGGCATCaagaagaagaaaggtggtggaaaga 1261
||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1055 ACCCTGAGATCCAAGGGTGGTTAGCCTTGGGTATCAAGAAGAAGAAGGGTGGTGGAAAGA 1114
Query 1262 agaagaaagc--ccaa-aaggcgggagagaaaggagaggCTTCAACAGAGGCTGAGCCAA 1318
|||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1115 AGAAGAAAGCAGCCAAGAAGGCAGGAGAGAAAGGAGAGGCTTCAACAGAGGCTGAGCCAA 1174
Query 1319 TGGACGCAAGTAGTAATGCTCAAGAATGAGTAGGAAGATTTGTCTTTGT 1367
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGGACGCAAGTAGTAATGCTCAAGAATGAGTAGGAAGATTTGTCTTTGT 1223
> Ahg891509 jgi|Araly1|891509|Al_scaffold_0007_3495
Length=477
Score = 254 bits (137), Expect = 2e-66
Identities = 261/314 (83%), Gaps = 35/314 (11%)
Strand=Plus/Plus
Query 1035 TTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGGCTCATGTCGTTTTGGTTTTCTACC 1094
|||||||||||||||||||||||||||||||||||| | | | | || | |
Sbjct 198 TTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGG-T-AAG--G---AGG--AT-GA-- 245
Query 1095 AGGGGATTTTGTTGCTCAGATTAAGTTCACAGTTTTGCTGATGCCAAATGGATCAGATAG 1154
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 246 AGGGGATTTTGTTGCCCAGATTAAGTTCACAGTTTTGCTGATGCCAAATGGATCGGATAG 305
Query 1155 GATCACTTCACATACACTTCAGGAACTTCCTAAAAAGACCA-TCGAAGACCCTGAGATCA 1213
|||||||||||||||||||||||| ||| || ||||||| | ||||||||||||||||
Sbjct 306 GATCACTTCACATACACTTCAGGAGCTTGATACTAAGACCAGT-GAAGACCCTGAGATCA 364
Query 1214 AAGGGTGGTTAGCTTTGGGCATCaagaagaagaaaggtggtggaaagaagaagaaagccc 1273
|||||||||||| ||||| |||||||||||||||| || ||| | | |
Sbjct 365 TAGGGTGGTTAGCCTTGGGTATCAAGAAGAAGAAAGCC-----AA-GAA-A-G----C-- 410
Query 1274 aaaaggcgggagagaaaggagaggCTTCAACAGAGGCTGAGCCAATGGACGCAAGTAGTA 1333
| || |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 411 A---GG----AGAGAAAGGAGAGGCTTCAACAGAGGCTGAGCCAATGGACACAAGTAGTG 463
Query 1334 ATGCTCAAGAATGA 1347
||||||||||||||
Sbjct 464 ATGCTCAAGAATGA 477
> Ahg933138 jgi|Araly1|933138|scaffold_401126.1
Length=326
Score = 163 bits (88), Expect = 3e-39
Identities = 135/155 (87%), Gaps = 13/155 (8%)
Strand=Plus/Plus
Query 316 AAAGAGCAAACAGCAAGCATGTACAAGAATTCTAAGAAGAAGATTGAGAGAGGTGTTGCG 375
|||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 4 AAAG-GCAAACAGCGAGCATGTACAAGAATGCTAAGAAGAAGATTGAGAGAGATGTTGCT 62
Query 376 TTCCCTACATGCATTTCTGTGAACAACACTGTTGGTCATTTTTCACCGCTTGCTAGTGAT 435
||||||||||||||||||||| | | |||||| ||||||||||| ||||||
Sbjct 63 TTCCCTACATGCATTTCTGTG------A----T--TCATTTCTCACCGCTTGCCAGTGAT 110
Query 436 GAGTCTGTGTTGGAAGATGGTGACATGGTTAAAAT 470
||||||||||||||||||||||| |||||||||||
Sbjct 111 GAGTCTGTGTTGGAAGATGGTGATATGGTTAAAAT 145
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 652 AAGGTAGCTGCAGCTTATGACTGCAAAATTGTTGAAGGTG 691
||||| ||||||||||||||||||||||||||||||||||
Sbjct 146 AAGGTGGCTGCAGCTTATGACTGCAAAATTGTTGAAGGTG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5