BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51810.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898078 jgi|Araly1|898078|Al_scaffold_0005_2044 649 0.0
> Ahg898078 jgi|Araly1|898078|Al_scaffold_0005_2044
Length=459
Score = 649 bits (351), Expect = 0.0
Identities = 424/460 (92%), Gaps = 2/460 (0%)
Strand=Plus/Plus
Query 71 ATGGCGTCAAAGCAACTGAGCAGAGAAGAGCTTGATGAGAAGGCGAAGCAAGGAGAGACC 130
||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCAAAGCAACTTAGCCGAGAAGAGCTCGATGAGAAGGCGAAGCAAGGAGAGACC 60
Query 131 GTCGTCCCAGGTGGCACCGGTGGCCACAGCCTCGAAGCTCAAGAGCATCTTGCTGAAGGA 190
||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GTCGTCCAAGGTGGCACCGGCGGCCACAGCCTCGAAGCCCAAGAGCATCTTGCTGAAGGA 120
Query 191 AGGAGCAAGGGAGG-GCAGACGAGGAAGGAGCAGCTAGGACATGAAGGTTATCAGGAGAT 249
|||||||| ||||| | |||||||||| ||||||||||| || || ||||||||||||||
Sbjct 121 AGGAGCAAAGGAGGAG-AGACGAGGAAAGAGCAGCTAGGGCACGAGGGTTATCAGGAGAT 179
Query 250 CGGTCACAAAGGTGGAGAGGCGAGGAAGGAGCAGTTAGGGCACGAGGGTTATCAGGAGAT 309
|| || ||||| ||||| ||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 180 GGGACATAAAGGAGGAGAAGCGAGGAAGGAGCAGCTAGGGCAGGAGGGTTATCAGGAAAT 239
Query 310 GGGTCACAAAGGTGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATCAGGAGAT 369
||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 240 GGGACATAAAGGTGGAGAGACGAGGAAGGAGCAGCTAGGGCACGAGGGCTATCAGGAGAT 299
Query 370 GGGACACAAAGGAGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATAAGGAGAT 429
||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 300 GGGACGTAAAGGAGGAGAGGCGAGAAAGGAGCAGCTAGGTCACGAGGGTTATCAGGAGAT 359
Query 430 GGGACGTAAAGGAGGACTCAGTACGATGGAAAAATCTGGTGGAGAGCGTGCGGAGGAAGA 489
||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 360 GGGGCGCAAAGGAGGACTCAGTACAATGGAAAAATCTGGTGGAGAGCGTGCCGAGGAAGA 419
Query 490 AGGGATTGAGATCGATGAGTCAAAGTTCACCAACAAGTGA 529
||||||||||||||| ||||| ||||||||||||||||||
Sbjct 420 AGGGATTGAGATCGACGAGTCCAAGTTCACCAACAAGTGA 459
Score = 268 bits (145), Expect = 4e-71
Identities = 175/190 (92%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 256 CAAAGGTGGAGAGGCGAGGAAGGAGCAGTTAGGGCACGAGGGTTATCAGGAGATGGGTCA 315
|||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 126 CAAAGGAGGAGAGACGAGGAAAGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACA 185
Query 316 CAAAGGTGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACA 375
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 186 TAAAGGAGGAGAAGCGAGGAAGGAGCAGCTAGGGCAGGAGGGTTATCAGGAAATGGGACA 245
Query 376 CAAAGGAGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATAAGGAGATGGGACG 435
||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 246 TAAAGGTGGAGAGACGAGGAAGGAGCAGCTAGGGCACGAGGGCTATCAGGAGATGGGACG 305
Query 436 TAAAGGAGGA 445
||||||||||
Sbjct 306 TAAAGGAGGA 315
Score = 185 bits (100), Expect = 4e-46
Identities = 120/130 (92%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 316 CAAAGGTGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACA 375
|||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 126 CAAAGGAGGAGAGACGAGGAAAGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACA 185
Query 376 CAAAGGAGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATAAGGAGATGGGACG 435
||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 186 TAAAGGAGGAGAAGCGAGGAAGGAGCAGCTAGGGCAGGAGGGTTATCAGGAAATGGGACA 245
Query 436 TAAAGGAGGA 445
|||||| |||
Sbjct 246 TAAAGGTGGA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5