BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51830.1
Length=2071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485538 jgi|Araly1|485538|fgenesh2_kg.5__1530__AT3G51830.1 2013 0.0
> Ahg485538 jgi|Araly1|485538|fgenesh2_kg.5__1530__AT3G51830.1
Length=2039
Score = 2013 bits (1090), Expect = 0.0
Identities = 1243/1313 (95%), Gaps = 25/1313 (2%)
Strand=Plus/Plus
Query 710 AAGTTACCAAGTTGCTGAGCTAAAGCTCAAGAATTCTCCTGCTGTGGTATCGATAATGTC 769
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 730 AAGCTACCAAGTTGCTGAGCTAAAGCTCAAGAATTCTCCTGCTGTGATATCGATAATTTC 789
Query 770 CAGGCGCTGTACACGACGTCTAGGTACACGTATGTGGAGAAGAGGAGCCAATCTTGAAGG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CAGGCGCTGTACACGACGTCTAGGTACACGTATGTGGAGAAGAGGAGCCAATCTTGAAGG 849
Query 830 GGACGCTGCTAATTTTGTCGAATCTGAACAAATAGTGGAGATTAATGGTTTCAAGTTCTC 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GGACGCTGCTAATTTTGTCGAATCTGAACAAATAGTGGAGATTAATGGTTTCAAGTTCTC 909
Query 890 ATTATTGCAGGTTCGAGGTTCAATCCCACTTCTTTGGGAGCAGATCGTTGATTTGAGTTA 949
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 910 ATTATTGCAGGTTCGAGGTTCAATCCCACTTATTTGGGAGCAGATCGTTGATTTGAGCTA 969
Query 950 TAAGCCACGGCTTAAGATAAATAAGCATGAAGAGACGCCAAAAGTTGTACAGCGCCATTT 1009
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TAAGCCAGGGCTTAAGATAAATAAGCATGAAGAGACGCCAAAAGTTGTACAGCGCCATTT 1029
Query 1010 CCATGATCTTTGCCAAAGATATGGAGAAATTATGGCAGTTGACCTAACAGATCAGCATGG 1069
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1030 CCATGATCTTTGCCAAAGATATGGAGAAATTATTGCAGTTGACCTAACAGATCAGCATGG 1089
Query 1070 AGATGAAGGTGCATTAAGCAAAGCATATGCCACCGAGATGGAGAAGCTTCCTGATGTGAG 1129
||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1090 AGATGAAGGTGAATTAAGCAAAGCATATGCCACTGAAATGGAGAAGCTTCCAGATGTGAG 1149
Query 1130 ATATGTCTCCTTTGACTTCCATCAAGTCTGTGGAACTACAAACTTCGACAACCTGGGGGT 1189
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 1150 ATATGTCTCCTTTGACTTCCATCAAATCTGTGGAACTACAAACTTTGACAACCTGAGGGT 1209
Query 1190 ACTGTATGAGCAGATTGGGGATGAATTTGAAAAGCAAGGATATTTCCTTGTAGACGCAGA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 ACTGTATGAGCAGATTGGGGATGAATTTGAAAAGCAAGGATATTTCCTTGTAGACGCAGA 1269
Query 1250 CGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGA 1329
Query 1310 CCGCACAAATGTTACCCAGAGTTTCATGGGCCAAAAAAGTCTGAATCTACAACTTCAAAG 1369
||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||
Sbjct 1330 CCGCACAAATGTTACCCAGAGTTACATGGGCCAGAAAAGTGTGAATCTACAACTTCAAAG 1389
Query 1370 GATCGGAGTGTGCGATTCCACAGAGTGTATATCCACGTTCGAAGATGATTACACAAAGTT 1429
||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1390 GATCGAAGTGTTTGATTCCACAGATTGTATATCCACGTTTGAAGATGATTACACAAAGTT 1449
Query 1430 CAGAACAATTTGGGCTGAGCAAGGGGACGAGGTTAGTTTGCAATATGCCGGGACATATGC 1489
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1450 CAGAACAATTTGGGCTGAGCAAGGGGACGAAGTTAGTTTGCAATATGCCGGGACCTATGC 1509
Query 1490 TCTTAAGGGCGACCTCGTAAGGTACGGGAAACAGACTATGACTGGAGCTATCAAAGATGG 1549
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1510 TCTTAAGGGCGACCTCGTAAGGTACGGGAAGCAGACTATGACTGGAGCCATCAAAGATGG 1569
Query 1550 CCTCAGTGCAATGTCGAGATATTATCTGAATAATTTCCAAGATGGTGTAAGGCAGGATGC 1609
|||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1570 TCTCAGTGCGATGTCGAGATATTATCTGAATAATTTCCAAGATGGTG-A--------TGC 1620
Query 1610 TTTGGACCTCATAAGTGGTCGCTACACAGTGGGCACACACAGCCCTTCACAACTCCAGCC 1669
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1621 TTTGGATCTCATAAGTGGTCGCTACACAGTGGGCACTCACAGCCCTTCACAACTCCAGCC 1680
Query 1670 CATTGGATCACAACCGTCTTTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAAC 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CATTGGATCACAACCGTCTTTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAAC 1740
Query 1730 AGTGACATCTTTCACAATTCATCAAGCGGGAAGAAACACGCAGCAGTATCTGGCGTCGGC 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1741 AGTGACATCTTTCACAATTCATCAAGCGGGAAGAAACACGCAGCAGTATCTGGCGTCAGC 1800
Query 1790 TTTGTGGGCTGGAGTGACTGCAGGAGTTGTGGCGATGATCAAAGCCAATGGAAGGCACTT 1849
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1801 ATTGTGGGCTGGAGTGACTGCAGGAGTTGTGGCAATGATCAAAGCCAATGGAAGGCACTT 1860
Query 1850 GACTTCAAGGCCTCGTCTTTGCCATCTAATTTGATTCCAT-TTGAATTGAGATTATTTGC 1908
| |||||||||||||||||||||||| |||||||| || || | |||||||| | ||
Sbjct 1861 GTGTTCAAGGCCTCGTCTTTGCCATCTCATTTGATTA-ATATT-ATTTGAGATTCTCTGT 1918
Query 1909 GTCTCACATTCTTCCCAAAACCCACACCCACTGTCCCTCTTTGCTTTCTCGTTCAACGTC 1968
||||||||||||||||||||||||| |||||||||||||||| | | ||||||
Sbjct 1919 GTCTCACATTCTTCCCAAAACCCACGCCCACTGTCCCTCTTT--T--C------AACGTC 1968
Query 1969 CGCACAAACCAAAAATCGAACTAAAAGTCTATATTACTGAACTTCTTTA-TTC 2020
|||||||| |||| |||||||||||||| ||| ||||||||||||||| |||
Sbjct 1969 CGCACAAA--AAAATTCGAACTAAAAGTCCATAGTACTGAACTTCTTTAGTTC 2019
Score = 1022 bits (553), Expect = 0.0
Identities = 663/713 (93%), Gaps = 20/713 (3%)
Strand=Plus/Plus
Query 1 TTTCTCCTGATCCAGTTCTTAATTGAACAAACTCCAACAGcatcatcatcatcatcatcC 60
||||||||||||||||| || |||||||||||||||||| | ||| ||||||||||||
Sbjct 1 TTTCTCCTGATCCAGTTATTGATTGAACAAACTCCAACA--A-CAT--TCATCATCATCC 55
Query 61 TTCAAATTATTTTTCCTATTTTGAAAAATTTATTTG-AAATCTCATAATTTACGTTAATG 119
||| | | |||||| |||||||||||| |||||||| ||||| ||||||||
Sbjct 56 TTC--A--A--------ATTTTGGAAAATTTATTTGAAAATCTCAGAATTTGCGTTAATG 103
Query 120 GAGATTGCTCCATCTACAAGTAGATTCAAGCTCTACGATCAATTCGAGCTTCTGGAGTTT 179
||||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 104 GAGATCGTTCCATCTTCAAGTAGATTCAAGCTCTACGATCAATTCGAGCTTCTAGAGTTT 163
Query 180 CCTGACAAGTACGTCGTCAAACCCATCGAATCGCCTGAGGAAGGCTTCTCCGTCAATCGG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 164 CCTGACAAGTACGTCGTCAAACCCATCGAATCGCCTGAGGAAGGCTTCTCCGTCGATCGG 223
Query 240 CGCGATGGCAATATCAAACCTCTTGATGAAAACGCATCTTCTGGGAGTCCTACTAGAGTC 299
||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 224 CGCGATGGCAACATCAAACCTCTTGATGAAAACGCATCTTCTGGGAATCCTACTAAAGTC 283
Query 300 TCTACTATCTATGGCGTAGGAGGAACTATTAGGCTCTTAGCAGGAACATACTTGCTAGTT 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TCTACTATATATGGCGTAGGAGGAACTATTAGGCTCTTAGCAGGAACATACTTGCTAGTT 343
Query 360 ATAACGTCTCGGGAGGAAGTTGGAAATTTTCTCGGTTTACCGATTTTTAGAGTTACGGCT 419
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 344 GTAACGTCTCGGGAAGAAGTTGGGAATTTTCTCGGTTTTCCGATTTTTAGAGTTACGGCT 403
Query 420 ATGAAATTCT-TACCTTGCAATGAGGCTTTGAGGTTTGCTACTGCTCAAGaaaaaaaGGA 478
||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 404 ATG-AATTTTCTACCTTGCAATGAGGCTGTGAGGTTTGCTACTGCTCAAGAAAAAAAGGA 462
Query 479 CGAAACATATTTTAGGACTCTGTTACAAGCACTTGAGACAACCCCTGGATTGTATTTTTC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CGAAACATATTTTAGGACTCTGTTACAAGCACTTGAGACAACCCCTGGATTGTATTTTTC 522
Query 539 GTATGAAACAGATCTAACATTGAATCTTCAAAGAAGGTGCAAGCTAGCTGAAGGTTGGAA 598
|||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 523 ATATGAAACTGATCTTACATTAAACCTGCAAAGAAGGTGCAAGCTAGCTGAAGGTTGGAA 582
Query 599 TCGTAAGCCTATGTGGAAGCAGGCTGACCCTCGATATGTTTGGAACTGGCATCTTTTGGA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 583 GCGTAAGCCTATGTGGAAGCAGGCTGACCCTCGATATGTTTGGAACTGGCATCTTCTGGA 642
Query 659 GGACTTAATTGAATGCAAACTGGATGGTTTTATTATTCCTATACTTCAAGGAA 711
||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 643 GGAGTTAATTGAATGCAAACTGGATGGTTTTATTATTCCTCTACTTCAAGGAA 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77894551025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5