BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51840.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485539 jgi|Araly1|485539|fgenesh2_kg.5__1531__AT3G51840.1 2383 0.0
> Ahg485539 jgi|Araly1|485539|fgenesh2_kg.5__1531__AT3G51840.1
Length=1535
Score = 2383 bits (1290), Expect = 0.0
Identities = 1428/1493 (96%), Gaps = 16/1493 (1%)
Strand=Plus/Plus
Query 114 ATCACGAAGCCAAAGAACAATTTCTCCGTCACTATCATAACCATGGCGGTGCTTTCATCT 173
||||||||||||||| | ||||||||| |||| |||||| ||||| ||||||||||||||
Sbjct 33 ATCACGAAGCCAAAG-A-AATTTCTCCATCACGATCATAGCCATGACGGTGCTTTCATCT 90
Query 174 GCAGATCGAGCTAGTAATGAGAAGAAGGTGAAGAGTTCATACTTTGATTTGCCACCTATG 233
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 91 GCAGATCGAGCTAGTACTGAGAAGAAGGTGAAGAGTTCATATTTTGATTTGCCGCCTATG 150
Query 234 GAAATGTCTGTAGCATTTCCTCAAGCAACTCCAGCCTCTACATTTCCACCTTGTACTTCA 293
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 151 GAAATGTCTGTAGCATTTCCTCAAGCAACTCCAGCTTCTACATTTCCACCGTGCACTTCA 210
Query 294 GACTATTATCATTTCAATGATCTACTGACTCCGGAA-GAACAAGCTATCCGGAAGAAAGT 352
|||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||
Sbjct 211 GACTATTATCATTTCAATGATCTATTGACTCC-GAAGGAACAAGCCATCCGGAAGAAAGT 269
Query 353 GAGGGAATGCATGGAGAAAGAAGTTGCTCCAATAATGACAGAGTACTGGGAGAAAGCAGA 412
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 270 GAGGGAATGCATGGAGAAAGAAGTTGCCCCCATAATGACAGAGTACTGGGAGAAAGCAGA 329
Query 413 ATTTCCATTCCATATCACTCCAAAGCTTGGGGCTATGGGTGTTGCTGGTGGCTCGATCAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 330 ATTTCCATTCCATATCACTCCAAAGCTTGGGGCTATGGGTGTTGCTGGTGGCTCGATTAA 389
Query 473 GGGTTATGGATGTCCTGGTCTCTCCATCACCGCCAATGCAATTGCCACAGCAGAAATAGC 532
|||||||||||||||||| || |||||||||||||||||| ||||||| |||||||||||
Sbjct 390 GGGTTATGGATGTCCTGGCCTATCCATCACCGCCAATGCAGTTGCCACTGCAGAAATAGC 449
Query 533 TAGAGTTGATGCAAGTTGTTCGACTTTCATTTTGGTGCATTCTTCTTTGGGCATGCTCAC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TAGAGTTGATGCAAGTTGTTCGACTTTCATTTTGGTGCATTCTTCTTTGGGCATGCTCAC 509
Query 593 TATTGCACTCTGTGGATCAGAAGCACAGAAGGAGAAGTATTTGCCTTCTTTGGCTCAATT 652
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 510 TATTGCACTTTGTGGATCAGAAGCGCAGAAGGAGAAGTATTTACCTTCTTTGGCTCAATT 569
Query 653 GAATACTGTGGCTTGTTGGGCTTTGACAGAGCCCGACAATGGAAGCGATGCAAGTGGTCT 712
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GAATACCGTGGCTTGTTGGGCTTTGACAGAGCCCGACAATGGAAGCGATGCAAGTGGTCT 629
Query 713 AGGAACGACTGCAACAAAGGTTGAAGGAGGTTGGAAAATTAATGGACAAAAGCGTTGGAT 772
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 630 AGGAACGACTGCCACAAAGGTTGAAGGAGGTTGGAAAATTAAGGGACAAAAGCGTTGGAT 689
Query 773 TGGAAACAGCACCTTTGCAGATCTGTTGATCATCTTTGCGAGGAATACAACAACTAACCA 832
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 690 TGGAAACAGCACCTTTGCAGATCTGTTGATCATCTTTGCTAGGAATACAACAACTAACCA 749
Query 833 AATCAACGGATTCATAGTCAAGAAAGATGCGCCTGGCCTAAAGGCTACTAAGATCCCAAA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AATCAACGGATTCATAGTCAAGAAAGATGCGCCTGGCCTAAAGGCTACTAAGATCCCAAA 809
Query 893 TAAAATAGGTTTACGTATGGTTCAAAATGGAGATATTCTACTACAGAATGTCTTTGTTCC 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TAAAATAGGTTTACGTATGGTTCAAAATGGAGATATTCTACTACAGAATGTCTTTGTTCC 869
Query 953 AGATGAGGATCGGTTACCTGGGGTAAATTCTTTTCAGGACACCAGCAAGGTTCTGGCTGT 1012
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 870 AGATGAGGATCGGTTACCTGGGGTAAATTCTTTTCAGGACACCAGCAAGGTCCTGGCTGT 929
Query 1013 CTCACGTGTAATGGTGGCCTGGCAACCAATCGGCATATCAATGGGAATCTACGATATGTG 1072
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 930 CTCACGTGTAATGGTTGCCTGGCAACCAATCGGCATATCCATGGGAATCTACGATATGTG 989
Query 1073 CCACAGGTATCTGAAGGAGAGGAAACAGTTTGGAGCACCGTTGGCTGCTTTCCAGTTAAA 1132
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 990 TCACAGGTATCTGAAGGAGAGGAAACAGTTTGGAGCACCATTGGCTGCTTTCCAGTTAAA 1049
Query 1133 CCAACAGAAGCTTGTGCAGATGCTGGGTAACGTTCAAGCGATGTTTCTAATGGGTTGGCG 1192
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1050 CCAACAGAAGCTTGTGCAGATGCTGGGTAATGTTCAAGCGATGTTCCTAATGGGTTGGCG 1109
Query 1193 TCTCTGCAAGCTGTATGAGACGGGTCAGATGACTCCAGGTCAAGCCAGTTTAGGAAAGGC 1252
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CCTCTGCAAGCTATATGAGACGGGTCAGATGACTCCAGGTCAAGCCAGTTTAGGAAAGGC 1169
Query 1253 ATGGATTTCATCAAAAGCGAGAGAAACTGCTTCGCTAGGTCGGGAATTACTTGGTGGGAA 1312
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1170 ATGGATTACATCGAAAGCGAGGGAAACTGCTTCGCTAGGTCGGGAATTACTTGGTGGGAA 1229
Query 1313 TGGAATTCTAGCAGATTTTCTGGTAGCAAAGGCTTTCTGTGACCTTGAACCCATTTATAC 1372
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct 1230 TGGAATTCTAGCAGATTTTCTGGTGGCAAAGGCATTCTGTGACCTTGAACCTATTTACAC 1289
Query 1373 ATACGAAGGGACTTATGATATAAACACCTTAGTAACAGGGAGGGAAGTAACGGGTATTGC 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1290 ATACGAAGGGACTTATGATATAAACACCTTAGTAACAGGGAGGGAAGTAACGGGTCTTGC 1349
Query 1433 GAGTTTCAAACCGGCTACACGTAGCCGTCTCTAAGTTAAAAGGTTGTCCAT-TGTTTGTT 1491
||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||
Sbjct 1350 GAGTTTCAAACCGGCTACACGGAGCCGTCTCTAAGTTAAAAGGTTGTGC-TGTGTTTGTT 1408
Query 1492 GTTGTCTGTTGGTTAGTATTGATATTGTGATGTGGGGTTTACATCTACAAAT-------G 1544
||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1409 GTTA-CTGCTGGTTAGTATTGATATTGTAATGTGGGGTTTACATCTACAAATCACAAATG 1467
Query 1545 TGCCAAATAATCTGACCC-AAAAAGATTTAGGGTCCAATGGGGGAATAATATC 1596
||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1468 TGCCAAATAATCTGACCTTAAAAA-ATTTAGGGTCCAATGGGGGAATAATATC 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5