BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51850.1
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485540 jgi|Araly1|485540|fgenesh2_kg.5__1532__AT3G51850.1 3247 0.0
Ahg938735 jgi|Araly1|938735|scaffold_502926.1 403 2e-111
> Ahg485540 jgi|Araly1|485540|fgenesh2_kg.5__1532__AT3G51850.1
Length=2080
Score = 3247 bits (1758), Expect = 0.0
Identities = 2003/2115 (95%), Gaps = 41/2115 (2%)
Strand=Plus/Plus
Query 28 accgtacgcttcttcgatctacgcttctctctAGCTATAGCTTCCATTGTCACGATTCCT 87
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ACCGTACGCTTCTTCGATCTACGCTTCTCTCTAGCTATAGCTTCCATTGTTACGATTCCT 60
Query 88 CCCAAAGCGTAGAATGTGGAACCCTAGATACCTCAAATTCAGCTAGAGATCTATCTACTT 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCAAAGCGTAGAATGTGGAACCCTAGATACCTCAAATTCAGCTAGAGATCTATCTACTT 120
Query 148 TCACCTCTATTACTTTCTACTTCTGAAACCCCTCATCAGAGCTACACACAGTGATGGGAA 207
| |||||||||||||||||| | | | | || | ||||||||||||| |
Sbjct 121 TTACCTCTATTACTTTCTAC-T-T--------T--T--GA---A-ACACAGTGATGGGGA 162
Query 208 ACTGTTGCAGATCTCCCGCAGCAGTTGCTAGAGAAGACGTGAAATCCAACTATTCCGGCC 267
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 163 ACTGTTGCAGATCTCCCGCAGCTGTAGCTAGAGAAGACGTGAAATCGAACTATTCCGGCC 222
Query 268 ACGATCACGCCCGCAAAGACGCCGCCGGCGGTAAAAAATCGGCGCCGATTCGAGTTCTAA 327
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 223 ACGATCACGCCCGTAAAGACGCCGGCGGCGGTAAAAAATCGGCGCCGATTCGAGTTCTCA 282
Query 328 GCGATGTTCCCAAGGAAAACATCGAGGACCGTTACTTACTCGACAGAGAACTCGGCCGCG 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GCGATGTTCCCAAGGAAAACATCGAGGACCGTTACTTACTCGACAGAGAACTCGGCCGCG 342
Query 388 GCGAGTTTGGTGTCACTTACCTCTGTATCGAGAGGTCCTCGCGTGACCTACTCGCTTGCA 447
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 343 GCGAGTTTGGTGTCACTTACCTCTGTATCGAGAGGTCTTCGCGTGACCTACTCGCTTGCA 402
Query 448 AATCGATCTCCAAGAGGAAGCTTAGAACTGCTGTGGATATTGAAGATGTTAAAAGAGAAG 507
| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 403 AGTCGATCTCGAAGAGGAAGCTTAGGACTGCTGTGGATATTGAGGATGTTAAAAGAGAAG 462
Query 508 TAGCGATTATGAAGCATTTGCCTAAGAGTTCGAGTATTGTTACTTTGAAAGAAGCTTGTG 567
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 463 TGGCGATTATGAAGCATTTGCCTAAGAGTTCGAGTATTGTTACTTTGAAGGAAGCTTGTG 522
Query 568 AGGATGATAATGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGTGGCGAGCTTTTCGATC 627
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 523 AGGATGATAATGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGTGGTGAGCTTTTCGATC 582
Query 628 GGATTGTTGCGAGAGGTCATTATACGGAGCGTGCTGCTGCTGGTGTTACTAAGACTATTG 687
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 583 GGATTGTTGCGAGAGGGCATTATACGGAGCGTGCTGCTGCTGGGGTTACTAAGACGATTG 642
Query 688 TTGAGGTTGTGCAGCTTTGTCATAAGCATGGTGTGATTCATAGAGATTTGAAGCCCGAGA 747
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 643 TTGAGGTTGTGCAACTTTGCCATAAGCATGGTGTGATTCATAGAGATTTGAAGCCGGAGA 702
Query 748 ACTTTTTGTTTGCTAATAAGAAGGAGAACTCGCCTTTGAAAGCTATTGATTTTGGATTGT 807
| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 703 ATTTTTTGTTCGCTAACAAGAAGGAGAACTCGCCGTTGAAAGCTATTGATTTTGGATTGT 762
Query 808 CGATTTTCTTCAAGCCAGGTGAGAAATTCTCTGAGATTGTTGGGAGTCCATATTACATGG 867
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 763 CGATTTTCTTCAAGCCAGGTGAGAAGTTCTCCGAGATTGTTGGGAGTCCATATTACATGG 822
Query 868 CACCTGAGGTGCTTAAGCGGAATTATGGACCCGAAATAGATATTTGGAGTGCTGGAGTGA 927
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 823 CACCTGAGGTGCTTAAGCGGAACTATGGACCCGAAATAGATATTTGGAGTGCTGGAGTGA 882
Query 928 TTCTTTATATTCTCTTGTGTGGAGTTCCTCCGTTCTGGGCAGAGTCAGAACAGGGAGTTG 987
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 883 TTCTTTATATTCTGTTGTGTGGAGTTCCCCCATTCTGGGCAGAGTCAGAACAGGGAGTTG 942
Query 988 CTCAGGCTATTCTGCGTGGAGTAATTGATTTTAAGAGGGAACCGTGGCCAAACATTTCTG 1047
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CTCAGGCTATTCTGCGCGGGGTAATTGATTTTAAGAGGGAACCGTGGCCAAACATTTCTG 1002
Query 1048 AGACCGCTAAGAATCTAGTCAGACAAATGTTAGAGCCTGATCCAAAGCGTCGGCTGACTG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 AGACCGCTAAGAATCTAGTCAGACAAATGTTAGAGCCTGATCCAAAGCGTCGGCTGACTG 1062
Query 1108 CAAAGCAAGTGCTTGAGCACCCATGGATTCAGAACGCAAAGAAAGCTCCCAATGTTCCTC 1167
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CAAAACAAGTGCTTGAGCACCCATGGATTCAGAACGCAAAGAAAGCTCCCAATGTTCCTC 1122
Query 1168 TTGGAGATGTTGTGAAGTCGAGGTTGAAGCAATTTTCAGTGATGAACCGATTCAAGAGAA 1227
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1123 TTGGAGATGTTGTGAAGTCCAGGTTGAAGCAATTTTCAGTGATGAACAGATTCAAGAGAA 1182
Query 1228 AAGCTTTAAGGGTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAA 1287
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1183 AAGCTTTGAGGGTTATTGCCGAATTCTTATCTACCGAAGAAGTAGAAGACATCAAAGTAA 1242
Query 1288 TGTTCAACAAGATGGATACTGATAATGATGGTATAGTTTCCATTGAGGAGTTGAAAGCCG 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TGTTCAACAAGATGGATACTGATAATGATGGTATAGTTTCCATTGAGGAGTTGAAAGCCG 1302
Query 1348 GACTTCGTGATTTTAGTACACAGCTAGCGGAATCAGAAGTTCAGATGCTTATTGAAGCGG 1407
||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1303 GACTTCGCGATTTTGGTACACAGCTAGCGGAATCAGAAGTCCAGATGCTTATTGAAGCGG 1362
Query 1408 TGGATACTAAAGGAAAAGGAACTCTAGACTATGGAGAATTTGTAGCAGTGTCTCTCCACC 1467
||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct 1363 TGGATACTAAAGGGAAAGGAACTCTGGACTATGGGGAATTTGTTGCAGTTTCTCTCCACC 1422
Query 1468 TGCAAAAGGTAGCAAACGATGAGCATCTCCGCAAAGCCTTCTCTTACTTTGACAAGGATG 1527
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1423 TGCAAAAGGTAGCAAACGATGAGCATCTCCGCAAAGCCTTCTCATACTTTGACAAGGATG 1482
Query 1528 GAAATGGGTACATTTTGCCCCAGGAGCTTTGTGACGCCTTAAAGGAAGATGGAGGAGATG 1587
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GAAATGGGTACATTTTACCCCAGGAGCTTTGTGACGCCTTAAAGGAAGATGGAGGAGATG 1542
Query 1588 ACTGTGTGGATGTCGCCAATGATATATTCCAAGAAGTTGACACAGACAAGGATGGGAGAA 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1543 ACTGTGTGGATGTCGCCAATGATATATTCCAAGAAGTTGACACAGACAAGGATGGCCGAA 1602
Query 1648 TAAGCTACGAAGAGTTTGCGGCAATGATGAAAACAGGAACGGATTGGAGAAAGGCGTCTC 1707
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1603 TAAGCTACGAAGAGTTTGCGGCAATGATGAAAACAGGAACTGATTGGAGAAAGGCGTCTC 1662
Query 1708 GTCATTACTCAAGAGGGAGATTCAATAGCCTAAGCATCAAGCTAATGAAGGACGGGTCTT 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1663 GTCATTACTCAAGAGGGAGATTCAATAGCCTAAGCATCAAGCTAATGAAGGACGGATCTT 1722
Query 1768 TGAACCTAGGCAACGAATAGCGAATCAAAGTGAAGAAGCCGCAATAGGGTCTTTAGTGTC 1827
| |||||||||||||||||| |||||||||||||||||| ||| |||||| ||||| |||
Sbjct 1723 TAAACCTAGGCAACGAATAGGGAATCAAAGTGAAGAAGCTGCATTAGGGTTTTTAGAGTC 1782
Query 1828 TGTCTCTCACGCCAC--GTTCTCGTGCACGTCAAGTATTAAACCAAGAGAAGGTAAAACT 1885
||||||||||||||| || |||| ||||||||||||| | ||||||||||||||| ||
Sbjct 1783 TGTCTCTCACGCCACACGTCCTCGCCCACGTCAAGTATTCAGCCAAGAGAAGGTAAATCT 1842
Query 1886 TGGGATTCAGAATTCATATCTTTTTGTACATCTTTCGTTTTTTAACCTTTCTATTTTTGG 1945
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1843 TGGGATTCAGAATTCATATCTTTTTGTACATCTTTCGTTTTT-AACCTTTATATTTTTGG 1901
Query 1946 TGATTATGTTATCTGTGTTCttttttttATTGGTTTATGGGTTGAGTTGTGTTTGTTTAG 2005
|||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 1902 TGATTATGTTAT--GTGT----------ATTGGTTTATGGGCTGAGTTGTGTTTGTTTAG 1949
Query 2006 TTTGTTCT-G-G-TAGAAATCCAAAAGACATGAGAATCAGTGTTTGATGTGTAGAAGGaa 2062
|||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 TTTGTTGTTGTGGTAGAAATCCAAAAGACATGAGAATCAGTGTTTGATGTGTAGAAGGAA 2009
Query 2063 aaaaaaCCAAAGACCATTT-CTGGTAATGATGTTGTAATATTCTTTTGTCTTCCTTAACC 2121
|||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 2010 AAAAAA--A--GACCATTTTCTGGTAATGATTTTGTAATATTCTTTTGTCTTCCTTAACC 2065
Query 2122 TCTATAATGATATGA 2136
|||||||||||||||
Sbjct 2066 TCTATAATGATATGA 2080
> Ahg938735 jgi|Araly1|938735|scaffold_502926.1
Length=1659
Score = 403 bits (218), Expect = 2e-111
Identities = 633/829 (76%), Gaps = 46/829 (6%)
Strand=Plus/Plus
Query 441 GCTTGCAAATCGATCTCCAAGAGGAAGCTTAGAACTGCTGTGGATATTGAAGATGTTAAA 500
||||| |||||||| | |||| |||||| || || ||||| |||||||| |||||||
Sbjct 288 GCTTGTAAATCGATTTTGAAGAAGAAGCTGAGGACAGCTGTTGATATTGAGGATGTTAGG 347
Query 501 AGAGAAGTAGCGATTATGAAGCATTTGCCTAAG-AGTTCGAGTATTGTTACTTTGAAAGA 559
|||||||| | ||| |||| |||| ||||| || | | | | | ||||||||||| |||
Sbjct 348 AGAGAAGTTGAGATCATGAGGCATATGCCTGAGCA-TCCAAATGTTGTTACTTTG-AAGG 405
Query 560 AG-CTTGTGAGGATGATAATGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGTGGCGAGC 618
|| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 406 AGACTTTTGAGGATGACCATGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGTGGTGAAT 465
Query 619 T-TTTCGATCGGATTGTTGCGAGAGGTCATTATACGGAGCGTGCTGCTGCTGGTGTTACT 677
| ||| ||| ||||||| || ||||| |||||||| ||| | |||||||||| ||| |||
Sbjct 466 TGTTT-GATAGGATTGTGGCTAGAGGGCATTATACCGAGAGAGCTGCTGCTGCTGTCACT 524
Query 678 AAGACTATTGTTGAGGTTGTGCAGCTTTGTCATAAGCATGGTGTGATTCATAGAGATTTG 737
||||| || | || ||||| ||| | ||||| |||||||| || || || || || ||
Sbjct 525 AAGACCATCATGGAAGTTGTTCAGGTGTGTCACAAGCATGGGGTAATGCACAGGGACCTG 584
Query 738 AAGCCCGAGAACTTTTTGTTTGCTAATAAGAAGGAGAACT-CGCCTTTGAAAGCTATTGA 796
|| || |||||||| ||||||| || |||||||||| || | ||| | || || |||||
Sbjct 585 AAACCTGAGAACTTCTTGTTTGGAAACAAGAAGGAGA-CTGCACCTCTCAAGGCCATTGA 643
Query 797 TTTTGGAT-TGTC-GATTTTCTTCAAGCCAGGTGAGAAATTCT--CTGAGATTGTTGGGA 852
||| || | | || | ||||||| || ||||| |||| || | | || || ||||| |
Sbjct 644 TTTCGG-TCTCTCTG-TTTTCTTTAAACCAGGCGAGAGGTT-TGAC-GAAATCGTTGGTA 699
Query 853 GTCCATATTACATGGCACCTGAGGTGCTTAAGCGGAATTATGGACCCGAAATAGATATTT 912
|||| || |||||||| || |||||||| || ||||||||||| || ||| | || ||||
Sbjct 700 GTCCGTACTACATGGCTCCCGAGGTGCTAAAACGGAATTATGGTCCAGAAGTTGACATTT 759
Query 913 GGAGTGCTGGAGTGATTCTTTATATTCT-CTTGTGTGGAGTTCCTCCGTTCTGGGCAGAG 971
||||||| || || ||||| || || || || ||||| || || || |||||||||||
Sbjct 760 GGAGTGCCGGTGTAATTCTCTACATACTGCTC-TGTGGTGTCCCGCCTTTCTGGGCAGAA 818
Query 972 TCAGAACAGGGAGTTGCTCAGGCTATTC-TGCG-TGGAGTAATTGATTTTAAGA-GGGAA 1028
| ||||| |||||||| || || || | | || | ||| | || || | || ||||
Sbjct 819 ACTGAACAAGGAGTTGCACAAGCAAT-CATTCGATCT-GTACTGGACTTCA-GAAGGGAC 875
Query 1029 CCGTGGCC-AAACATTTCTGAGACCGCTAA-GAATCT-AGTCAG-ACAAATG-TTAGAGC 1083
|| ||||| ||| ||||||| | ||| || || || | |||| | ||||| || || |
Sbjct 876 CCATGGCCCAAAG-TTTCTGAAAACGCAAAAGAC-CTTA-TCAGGA-AAATGCTT-GATC 930
Query 1084 CTGATCCAAA-GCGTCGGCTGACTGCA-AAGCAAGTGCTTGAGCACCCATGGATT-CAGA 1140
|||| ||||| |||||| || || || || ||||| || || || || ||| || ||||
Sbjct 931 CTGA-CCAAAAGCGTCGTCTTACAGCTCAA-CAAGTCCTAGATCATCCGTGG-TTACAGA 987
Query 1141 ACGCAAAGAAAGCTCCCAATGT-TCCTCTTGGAGATGTTGTGAAGTCGAGGTTGAAGCAA 1199
| ||||||| |||||||||||| || | | || || |||| | | |||||||||||
Sbjct 988 ATGCAAAGACAGCTCCCAATGTATCAT-TGGGTGAAACAGTGAGGGCAAGGTTGAAGCAG 1046
Query 1200 TTTTCAGTGATGAACC-GATTCAAGAGAAA-AGCTTTAAGGGTTATTGC 1246
||| | || |||||| | | ||||| || ||| | |||||||||||
Sbjct 1047 TTTACCGTCATGAACAAGCT-CAAGA-AACGAGCACTCAGGGTTATTGC 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5