BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51860.1
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485541 jgi|Araly1|485541|fgenesh2_kg.5__1533__AT3G51860.1 2261 0.0
Ahg482825 jgi|Araly1|482825|fgenesh2_kg.4__1885__AT2G38170.1 863 0.0
> Ahg485541 jgi|Araly1|485541|fgenesh2_kg.5__1533__AT3G51860.1
Length=1559
Score = 2261 bits (1224), Expect = 0.0
Identities = 1355/1418 (96%), Gaps = 10/1418 (1%)
Strand=Plus/Plus
Query 1 CAGATGTAGTAGAATC-AAA---ACGTCTTAAAAC-ATGGGAAGTATCGTGGAGCCATGG 55
|||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |
Sbjct 1 CAGATGTAGTAGAATCAAAACGTACGTCTTAGAACTATGGGAAGTATCGTGGAGCCAT-G 59
Query 56 GCAGCAATCGCCGAGAACGGAAACGCAAACGTGACCGCGAAAGGCTCGAGCAGGGAGCTG 115
| |||||||||||||||||||||||||||| |||||| ||||| | ||||| ||||||
Sbjct 60 G--GCAATCGCCGAGAACGGAAACGCAAACGCGACCGCAAAAGGGTTAAGCAGAGAGCTG 117
Query 116 CGACATGGGAGAACAGCACACAACATGTCTTCATCGTCGCTAAGGAAGAAATCAGACCTG 175
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 CGACATGGGAGAACAGCACACAACATGTCTTCATCGTCGCTAAGAAAGAAATCAGACCTG 177
Query 176 AGATTGGTTCAGAAAGTTCCATGCAAAACTCTCAAGAACATTCTCTCTAATCTTCAAGAA 235
|||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 178 AGATTGATTCAGAAAGTTCCATGCAAAACTCTTAAGAACATTCTCTCCAATCTTCAAGAA 237
Query 236 GTCATTCTTGGTACTAAGCTTACTCTCTTATTTCTCGCCATCCCTCTCGCCATTCTTGCC 295
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 238 GTCATTCTTGGTACTAAGCTTACTCTCTTGTTTCTCGCCATCCCTCTCGCCATTCTCGCC 297
Query 296 AATTCTTACAACTACGGTCGTCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCT 355
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AATTCTTACCACTACGCTCGTCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCT 357
Query 356 CTAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCTACACTGGTCCAACAGTG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCTACACTGGTCCAACAGTG 417
Query 416 GGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCGCGATACTAGCG 475
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 418 GGAGGTTTGTTGAACGCGACTTGTGGAAACGCAACGGAGCTGATAATCGCGATACTAGCG 477
Query 476 TTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGGGTTCAATTCTCTCAAAC 535
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 478 TTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGGGTTCAATCCTCTCGAAC 537
Query 536 CTTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCGCCAATATCCGCCGCGAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 538 CTTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCGCCAATATCCGAAGGGAG 597
Query 596 CAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGCTGCTTATGGGCCTGTTG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 CAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGCTGCTTATGGGTCTGTTG 657
Query 656 TGTCATTTGCTGCCATTATTGTTAAAATATGCAGCAACCGGCGAAGTATCGACCTCTATG 715
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| ||
Sbjct 658 TGTCATTTGCTGCCGTTATTGTTAAAATATGCAGCAACCGGTGAAGCATCGACCTCTCTG 717
Query 716 ATTAACAAAATGTCGCTCACTCTGTCGCGGACAAGCAGCATAGTTATGCTTATTGCTTAC 775
||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||
Sbjct 718 ATTAACAAAATGTCGCTTACTCTGTCGCGTACTAGCAGCATACTTATGCTTATTGCTTAC 777
Query 776 ATTGCTTATCTCATCTTCCAGCTCTGGACTCACCGCCAATTGTTTGAGGCACAACAGgat 835
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 778 ATTGCTTATCTCATCTTCCAGCTCTGGACTCACCGCCAATTTTTTGAGGCACAAGAGGAT 837
Query 836 gatgatgatgcatatgatgatgaGGTTAGTGTTGAAGAAACTCCAGTGATAGGATTCTGG 895
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 838 GATGATGATGCATATGATGATGAGGTTACTGTTGAAGAAACTCCAGTGATAGGATTCTGG 897
Query 896 AGCGGATTTGCTTGGCTCGTTGGGATGACAATAGTCATCGCATTGCTATCAGAGTATGTT 955
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 898 AGCGGATTTGCTTGGCTCGTTGGGATGACAATCCTCATAGCATTGCTATCAGAGTATGTT 957
Query 956 GTGGACACGATCGAGGATGCATCGGACTCATGGGGACTATCAGTGAGTTTCATAAGCATC 1015
|||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GTGGCCACTATTGAGGATGCATCGGACTCATGGGGACTATCAGTGAGTTTCATAAGCATC 1017
Query 1016 ATATTGCTTCCCATTGTTGGGAATGCGGCTGAGCATGCTGGAGCCATCATTTTCGCATTC 1075
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1018 ATATTGCTTCCCATTGTTGGGAACGCGGCTGAGCACGCTGGAGCCATCATTTTCGCATTC 1077
Query 1076 AAGAACAAGCTCGACATATCTCTAGGGGTTGCGTTGGGCTCTGCAACTCAGATTTCTTTG 1135
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 AAGAACAAGCTCGACATATCTCTAGGGGTTGCGTTGGGCTCTGCAACTCAAATTTCTTTG 1137
Query 1136 TTCGTGGTCCCATTGAGTGTTATCGTTGCGTGGATCCTGGGAATAAAAATGGATCTCAAC 1195
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1138 TTCGTGGTCCCATTGAGTGTTATCGTTGCGTGGATCCTAGGAATAAAAATGGATCTCAAC 1197
Query 1196 TTTAACATCCTTGAAACTAGCTCTCTAGCTTTGGCCATTATCATCACAGCCTTCACTTTA 1255
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 TTCAACATCCTTGAAACTAGCTCTCTAGCTTTGGCCATTATCATCACAGCCTTCACATTA 1257
Query 1256 CAGGATGGAACTTCTCATTACATGAAGGGACTGGTTCTATTGTTATGCTATGTCATCATC 1315
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 CAGGATGGAACTTCTCATTACATGAAGGGACTGGTTCTATTGTTGTGCTATGTCATCATC 1317
Query 1316 GCGGCGTGTTTCTTCGTCGACCAAATTCCCCAACCAAATGATTTGGACGTGGGACTTCAA 1375
||||| |||||||||||||||||||||||||| ||||||| | | |||||||||||||||
Sbjct 1318 GCGGCCTGTTTCTTCGTCGACCAAATTCCCCAGCCAAATGGTATAGACGTGGGACTTCAA 1377
Query 1376 CCCATGAACAATTTGGGAGAAGTTT-TCTCAGCTTAAA 1412
||||||||||||||||||||||||| || |||||||||
Sbjct 1378 CCCATGAACAATTTGGGAGAAGTTTATC-CAGCTTAAA 1414
Score = 171 bits (92), Expect = 2e-41
Identities = 143/164 (87%), Gaps = 18/164 (11%)
Strand=Plus/Plus
Query 1457 AAATTATGATTTGATTGATTCGTCATCCAAAAACGGAGAGACTTTGTCAGAGGGATTCCT 1516
||| |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 1412 AAA-TATGATTTGATTGATTCGTCATCCAAAA-CAGAG-GACTTTGTCAGAGGGATTCCT 1468
Query 1517 CAAGCATGAA--TGAGGGAGGGAGCTTGATGAAGACAGAGGTTCTTGGTGTTTAAGAAAT 1574
|||||||||| ||||||||||||||||||||||||| || | ||||| |
Sbjct 1469 CAAGCATGAAAATGAGGGAGGGAGCTTGATGAAGACA----TT-T--------AAGAAGT 1515
Query 1575 GATCACATTAAtttctgtttgctttctttttctgtttgttgttg 1618
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1516 GATCACATTAATTGCTGTTTGCTTTCTTTTTCTGTTTGTTGTTG 1559
> Ahg482825 jgi|Araly1|482825|fgenesh2_kg.4__1885__AT2G38170.1
Length=1782
Score = 863 bits (467), Expect = 0.0
Identities = 1076/1361 (79%), Gaps = 78/1361 (6%)
Strand=Plus/Plus
Query 68 GAGAACGGAAACGCAAACGTGACCGCGAAAGGCTCGAGCAGGGAGCTGCGACATGGGAGA 127
|||||||| ||||||| | |||| || ||||| ||||| || || ||| ||| ||| |||
Sbjct 144 GAGAACGGGAACGCAAGCATGACGGCCAAAGGATCGAGTAGAGAACTGAGACTTGGAAGA 203
Query 128 ACAGCACACAACATGTCTTCATCGTCGCTAAGGAAGAAATCAGACCTGAGATTGGTTCAG 187
||||| || | ||||||||| || || || ||||||||||||||||| || || ||||
Sbjct 204 ACAGCGCATAGCATGTCTTCTTCTTCTCTGAGGAAGAAATCAGACCTCCGAGTGATTCA- 262
Query 188 AAA-GTTCCATGCAAA--ACTCTCAAGAACATTCTCTCTAATCTTCAAGAAGTCATTCTT 244
||| ||||||| |||| ||| | ||| | ||||||||||||||||||||||||||||
Sbjct 263 AAAGGTTCCATACAAAGGACT-TAAAG-ATTTTCTCTCTAATCTTCAAGAAGTCATTCTC 320
Query 245 GGTACTAAGCTT-AC-TCTCTTATTTCTC-GCCAT-CCCTCTCGCCATT-CTTGCCAATT 299
|| || |||||| | | |||| |||| | ||||| ||| | ||||||| ||| || ||
Sbjct 321 GGAACAAAGCTTGCCAT-TCTT-TTTC-CGGCCATACCCGC-CGCCATTATTTG-CACTT 375
Query 300 CTTACAAC-TACGGTC-GTCCGTT-GATATTTGGACTGAGCTTGATAGGGCTGACACCTC 356
|| | | | ||| | || || |||||||||||| |||||| |||| ||||| |||
Sbjct 376 ATTGTGGCGT-CAGTCAG-CC-TTGGATATTTGGACTTAGCTTGCTAGGACTGACTCCTT 432
Query 357 TAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCTACACTGGTCCAACAGTGG 416
| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 433 TGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCTACACCGGTCCTACATTGG 492
Query 417 GCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCGCGATACTAGCGT 476
| ||||| |||||||| ||||||||||||||||| || |||||||||| || || || |
Sbjct 493 GTGGTTTATTGAACGCAACTTGTGGAAACGCGACTGAATTGATAATCGCAATTCTTGCTT 552
Query 477 TGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGGGTTCAATTCTCTCAAACC 536
|| |||||||||| || |||||||||||||| || || | ||||| ||| | || ||||
Sbjct 553 TGACCAATAACAAGGTCGCAGTGGTGAAATATTCGCTGCTAGGTTCGATTTTGTCGAACC 612
Query 537 TTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCGCCAATATCCGCCGCGAGC 596
|| | |||||||| || ||||| ||||||| ||| || ||||| |||||||| | ||||
Sbjct 613 TTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCGCTAATATCCGAAGGGAGC 672
Query 597 AGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGCTGCTTATGGGCCTGTTGT 656
|||||||||||||||||||||||||||||||||||||||| || || ||||| | ||||
Sbjct 673 AGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTACTTCTAATGGGTTTCTTGT 732
Query 657 GTCATTTGCTGCCATTATTGTTAAAATA--TGCAGCAACCGGCGAAGTA--TCGACCT-C 711
|||| ||||||||||| ||| | |||| || |||| ||| ||| | ||| || |
Sbjct 733 GTCACTTGCTGCCATTGTTGGTGGAATACTTG--GCAAACGG-AAAG-ACTTCG-GCTGC 787
Query 712 TATGATT-AACAAAATGTC-GCTCACTCTGTCGCG-GACAAGCAGCATAGTTATGCTT-A 767
| | || | | ||| | || | | | ||||| | | ||| || |||||| || |
Sbjct 788 TGT-TTTGTCCGACATG-CAACTGAGTATATCGCGAGGC-TTCAGTATTGTTATG-TTGA 843
Query 768 T-TGCTTACATTGCTTATCTCATCTTCCAGCTCTGGACTCACCGCCAATTGTTTGAGGCA 826
| | |||||| || ||||| | ||||| || |||||||||||||||||||| || |||
Sbjct 844 TCAG-TTACATCGCATATCTTGTTTTCCAACTTTGGACTCACCGCCAATTGTTCGATGCA 902
Query 827 CAACAGgatgatgatgatgca-tatgatgatgaGGTTAGTGTTGAAGAAACTC-CAGTGA 884
| | | ||| | || |||| | |||||||| || | | | | |||||||| | | || |
Sbjct 903 C-A-A-GATCAGGAGGATG-AGTATGATGACGATG-T-G-GAGGAAGAAAC-CGCGGTTA 954
Query 885 -TAGGATTCTGGAGCGGATTTGCT-TGGCTCGTTGGGATGACAATAGTCATCGCATTGCT 942
|| | || |||||||| |||| | ||| | |||||||||||| | |||||||||||||
Sbjct 955 TTA-GTTTTTGGAGCGGTTTTG-TCTGGTTGGTTGGGATGACACTCTTCATCGCATTGCT 1012
Query 943 ATCAGAGTATGTTGTGGACACGATCGAGGATGCATCGGACT-CATGGGGAC-TATCAGTG 1000
||| ||||||||||| | |||||| ||||| ||||| || | || || || ||||||||
Sbjct 1013 ATCGGAGTATGTTGTAGCCACGATTGAGGAAGCATCAGA-TAAAT-GGAACTTATCAGTG 1070
Query 1001 AGTTTCATAAGCATCATATTGCTTCCCATTGTTGGGAATGCGGCTGAGCATGCTGGAGCC 1060
|||||||||||||||||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct 1071 AGTTTCATAAGCATCATATTGCTTCCTATTGTTGGAAACGCAGCTGAACATGCTGGAGCC 1130
Query 1061 ATCATTTTCGCATTCAAGAACAAGCTCGACATATCTCTAGGG-GTTGCGTTGGGCTCTGC 1119
| ||||| || || ||||||||||||||||||||| | ||| ||||| || ||||||||
Sbjct 1131 GTTATTTTTGCCTTTAAGAACAAGCTCGACATATCTTT-GGGAGTTGCATTAGGCTCTGC 1189
Query 1120 AACTCAGATTT-CTTTGTTCGTGGTCCCATTGAGTGTTATCGTTGCGTGGATCCTGGGAA 1178
||||||||| ||| ||||| ||||| |||| | |||| || ||||| ||||||
Sbjct 1190 GACTCAGATTGGCTTA-TTCGTCGTCCCCTTGACCATCGTCGTGGCATGGATTTTGGGAA 1248
Query 1179 TAAAAATGGATCTCAACTTTAA--CATCCTTGAAACTAGCTCTCTAGCT-TTGGCCATTA 1235
| || ||||||||||| ||| | |||| |||||| ||| ||| ||| || ||||||
Sbjct 1249 TTAACATGGATCTCAA-TTTCGGTC-TCCTCGAAACTGGCTGTCTTGCTGTTT-CCATTA 1305
Query 1236 TCATCACAGCCTTCACTTTACAGGATGGAACTTCTCATTACATGAAGGGACTGGTTCTAT 1295
|||||||||||||||| ||||||||||| | |||||| ||||||||||||||||| || |
Sbjct 1306 TCATCACAGCCTTCACATTACAGGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCT 1365
Query 1296 TG-TTATGCTATGTCATCATCGCGGCGTGTTTCTTCGTCGACCAAA-TTCCCCA-AC-CA 1351
|| || |||||| |||| || || ||||||||||||||| ||| ||||||| | ||
Sbjct 1366 TGCTT-TGCTATTTCATTATTGCCATATGTTTCTTCGTCGAC-AAACTTCCCCAGAAACA 1423
Query 1352 AA-TGATTTGGACGTGGGACTTCAACCCATGAACAAT-TTG 1390
|| || | | || |||||| |||| | ||||||||| |||
Sbjct 1424 AAATGCTATACACTTGGGACATCAAGCGATGAACAATGTTG 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5