BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51890.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485546 jgi|Araly1|485546|fgenesh2_kg.5__1538__AT3G51890.1 1182 0.0
> Ahg485546 jgi|Araly1|485546|fgenesh2_kg.5__1538__AT3G51890.1
Length=896
Score = 1182 bits (640), Expect = 0.0
Identities = 821/901 (91%), Gaps = 41/901 (5%)
Strand=Plus/Plus
Query 149 ATGGCGGCGACGGAGGAAACTTCACGGCTTACGAGTCTCGATTCCAGTCGCAGCGGTTTG 208
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 8 ATGGTGGCGACGGAGGAAACTTCACGGTTTACGAGTCTCGATTCCAGTCGCAGCGGTTTG 67
Query 209 ACTCTTCCTTCTCTAATTTTGACTCCCAACCGGAGAAAGAGTCAGACTTACCATGCGGCG 268
|||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 68 ACTCGTCCTTCTCGAATTTTGACTCCCAACCAGAGAAAGAGTCAGACTTACCAGGCGACG 127
Query 269 ATTCATCT-C-C---T----C-----G----ACCCGAAACTCAATCTCCGCCGTCGATAA 310
|||| ||| | | | | | ||| ||||||||||||||||||| |||||
Sbjct 128 ATTCGTCTCCTCAATTAAACCAGAAGGAATTACCGGAAACTCAATCTCCGCCGTTGATAA 187
Query 311 ATAGTTTCGATGATACAAACGATTCGATCTTGCCGCCACCATCGGCCATGGAGAAAGAGG 370
| ||||| |||||||| |||| |||||||||||| || ||||||||||||||||||||||
Sbjct 188 ACAGTTTAGATGATACGAACGGTTCGATCTTGCCTCCTCCATCGGCCATGGAGAAAGAGG 247
Query 371 AAGGTTTCGCTCTTAGAGAGTGGCGAAGGCTAAATGCTCTGAGATTGgaagagaaagaaa 430
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AAGGTTTTGCTCTTAGGGAGTGGCGAAGGCTAAATGCTCTGAGATTGGAAGAGAAAGAAA 307
Query 431 aggaagagaaagaaaTGGTTCAACAAATTCTAGAAGCAGCAGAGCAATATAAGGCTGAGT 490
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 308 AGGAAGAGAAAGAAATGGTTCAACAAATTATAGAAGCAGCAGAGCAATACAAGGCTGAGT 367
Query 491 TCTATAGCAAGCGTAACGTTACTATTGAAAACAACAAGAAACTAAACCGCGAGAAAGAGA 550
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 368 TCTATAGCAAGCGTAACGTTACTATTGAAAACAACAAGAAATTGAACCGCGAGAAAGAGA 427
Query 551 AGttttttttGGAGAATCAAGAAAAGTTTTACGCTGAAGCTGACAAAAACAATTGGAAGG 610
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 428 AGTTGTTTTTGGAGAATCAAGAAAAGTTTTACGCTGAAGCGGACAAAAACAACTGGAAGG 487
Query 611 CGATTGCAGAACTCATTCCTCGTGAAGTGCCAGTTATAGAGAATAGAGGGAACAAGAAGA 670
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 488 CGATTGCGGAACTCATTCCTCGTGAAGTACCAGTTATAGAGAATAGAGGGAATAAGAAGA 547
Query 671 AAACAGCAACCATAACTGTAATCCAGGGACCAAAGCCAGGGAAGCCCACTGATCTGTCTC 730
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AAACAGCAACCATAACTGTGATCCAGGGACCAAAGCCAGGGAAGCCCACTGATCTGTCTC 607
Query 731 GTATGCGTCAAGTGCTCACGAAACTCAAGCACAATCCGCCAACTCATATGAAGCCAAAAC 790
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 608 GTATGCGTCAAGTGCTCACGAAGCTCAAGCACAATCCGCCAACTCATATGAAGCCAAAAT 667
Query 791 TGCCCTCACCATCTGGAGCTGACCCGAATGTGAGTGTGAGTGAACAGGTCACAGTTACAG 850
|||||||||||||||||||||||||||||||||||| | || ||||||||| |||||
Sbjct 668 TGCCCTCACCATCTGGAGCTGACCCGAATGTGAGTG--A---AA-AGGTCACAGATACAG 721
Query 851 AGAAGTTGTAGTT-GTGTATGTGACAAGTT-AACTTCTTCTTGATTGATGTT-AAA-CCG 906
||||||||||||| |||| ||||||| ||| |||||||| | ||| |||| ||| |||
Sbjct 722 AGAAGTTGTAGTTTGTGTTTGTGACA-GTTTAACTTCTT-T--ATT--TGTTGAAAACCG 775
Query 907 TCTTTACTTTGTTAGCTTCCCTCATGTTCAGTCTCGACTATTGTTTGTTTTGATTTCGTC 966
|||||||||||||||||||| |||||||||||||||| | |||||||||||| |||| ||
Sbjct 776 TCTTTACTTTGTTAGCTTCCTTCATGTTCAGTCTCGAATTTTGTTTGTTTTGGTTTCATC 835
Query 967 TTTGGTCTTACCA-TT------GTTGGTTTCCCACACAGTTTTCTACTTTGATGTATATA 1019
||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 836 TTTGGTCTTACCAATTACCATTGTTGGTTTCCCACACAGTTTTCAACTTTGATGTATATA 895
Query 1020 T 1020
|
Sbjct 896 T 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5