BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51910.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485548 jgi|Araly1|485548|fgenesh2_kg.5__1540__AT3G51910.1 1149 0.0
> Ahg485548 jgi|Araly1|485548|fgenesh2_kg.5__1540__AT3G51910.1
Length=837
Score = 1149 bits (622), Expect = 0.0
Identities = 735/790 (93%), Gaps = 6/790 (1%)
Strand=Plus/Plus
Query 34 CCACCACCACCACCACAACCAATGGAGGGTTTACACGAAAAT-GCTCCACCTCCATTTCT 92
|||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 46 CCACCACCACAACCACAACCAATGGAGGGTTTACACGAAATTGGC-CCACCTCCATTTCT 104
Query 93 GACCAAGACATTTGAGATGGTGGATGATCCAAACACTGACCACATCGTATCTTGGAACAG 152
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 105 GACCAAGACATTTGAGATGGTGGATGATCCAAATACTGACCACATCGTTTCTTGGAACAG 164
Query 153 AGGAGGAACAAGTTTTGTCGTCTGGGATTTGCATTCTTTCTCCACGATTCTCCTTCCTCG 212
|||||| || || |||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 165 AGGAGGCACTAGCTTTGTCGTTTGGGATTTGCATTCTTTCTCTACGATTCTTCTCCCTCG 224
Query 213 TCATTTCAAACACAGCAATTTCTCAAGTTTCATCAGACAACTCAATACTTATGGTTTCAG 272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ACATTTCAAACACAGCAATTTCTCAAGTTTCATCAGACAACTCAATACTTATGGTTTCAG 284
Query 273 AAAGATAGAAGCAGAGAGATGGGAATTTGCAAACGAAGAGTTTTTGTTAGGACAAAGACA 332
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 285 AAAGATAGAAGCAGAGAGATGGGAATTTGCAAACGAAGGGTTCTTGTTAGGACAAAGACA 344
Query 333 GTTGTTGAAGAACATCAAGAGGAGAA-ACCCTTT--TACTCCATCATCTTCACCAAGCCA 389
||||||||||||||||||||| |||| | ||||| |||| | |||||| ||||||||||
Sbjct 345 GTTGTTGAAGAACATCAAGAGAAGAACAACCTTTAGTACTTCTTCATCTCCACCAAGCCA 404
Query 390 TGACGCTTGCAACGAGCTTCGCAGAGAGAAGCAAGTGCTAATGATGGAGATAGTGAGTCT 449
|||||||||||||||||||||||| ||||| ||| ||||| |||||||| | || |||||
Sbjct 405 TGACGCTTGCAACGAGCTTCGCAGGGAGAAACAATTGCTATTGATGGAGCTGGTAAGTCT 464
Query 450 AAGACAGCAGCAACAAACAACGAAAAGCTACATCAAAGCTATGGAACAGAGGATAGAAGG 509
||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 465 GAGACAGCAGCAACAAACTACGAAAAGCTACGTCAAAGCTGTGGAACAGAGGATAGAAGG 524
Query 510 AACAGAGAGGAAACAGAGACAAATGATGTCGTTTCTGGCTAGAGCAATGCAGAGTCCTTC 569
| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 525 AGCAGAGAGGAAACAGAGACAAATGATGTCGTTTTTGGCTAGAGCAATGCAGACTCCTTC 584
Query 570 GTTTTTGCATCAGTTGTTGAAACAAAGAGATaaaaaaaTTAAGGAGCTTGAGGATAATGA 629
||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||
Sbjct 585 GTTTTTGCATCAGTTGTTGAAGCAGAGAGATAAAAAGATTAAGGAGCTTGAGGATGATGA 644
Query 630 GTCAGCAAAGAGGAAAAGAGGTTCTTCTTCGATGTCGGAATTGGAAGTTTTGGCTTTGGA 689
|||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 645 GTCAGCAAAGAGGAAAAGAGGTTCTTCTTCCATGTCGGAATTGGAGGCTTTGGCTTTGGA 704
Query 690 GATGCAAGGGCATGGAAAACAGAGGAATATGTTGGAAGAAGAGGATCATCAACTGGTGGT 749
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 705 GATGCAAGGGTATGGAAAACAGAGGAATATGTTGGAAGAAGAGGATCATCATTTGGTTGT 764
Query 750 AGAGAGAGAGTTGGATGATGGTTTCTGGGAAGAGTTGCTTAGTGATGAGAGTTTGGCTTC 809
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 765 AGAAAGAGAGTTGGATGATGGTTTTTGGGAAGAGTTACTTAGTGATGAGAGTTTGGCTTC 824
Query 810 CACCTCCTAA 819
|| || |||
Sbjct 825 TACTTC-TAA 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5