BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51920.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938059 jgi|Araly1|938059|scaffold_502250.1 797 0.0
> Ahg938059 jgi|Araly1|938059|scaffold_502250.1
Length=496
Score = 797 bits (431), Expect = 0.0
Identities = 477/499 (96%), Gaps = 4/499 (1%)
Strand=Plus/Plus
Query 144 ACTTTTCTTTGTGATCGAAGATATGGCGGATGCTTTCACAGATGAACAGATCCAAGAGTT 203
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ACTTTTCTTTGTGATCGAAG--ATGGCTGATGCTTTCACAGATGAACAGATCCAAGAGTT 58
Query 204 TTACGAAGCCTTCTGTCTCATAGACAAAGATTCCGATGGGTTCATCACGAAGGAGAAGCT 263
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 59 TTACGAAGCATTCTGTCTCATCGACAAAGATTCCGATGGGTTTATCACGAAGGAGAAGCT 118
Query 264 AACGAAAGTGATGAAGTCGATGGGGAAGAATCCAAAGGCGGAACAACTGCAACAGATGAT 323
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 119 AACGAAAGTGATGAAGTCGATGGGGAAGAATCCGAAGGCGGAACAACTCCAACAGATGAT 178
Query 324 GAGCGATGTTGACATCTTTGGCAACGGTGGCATCACTTTTGATGATTTCTTGTATATTAT 383
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAGTGATGTCGACATCTTCGGCAACGGTGGCATCACTTTTGATGATTTCTTGTATATTAT 238
Query 384 GGCTCAAAACACTTCTCAGGAATCAGCATCGGATGAGTTAATTGAGGTATTCAGAGTGTT 443
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 239 GGCTCAAAACACTTCTCAGGAATCGGCATCGGATGAGTTAATAGAGGTATTCAGAGTGTT 298
Query 444 CGACAGAGACGGAGATGGTCTCATATCTCAACTTGAGTTGGGAGAAGGAATGAAGGACAT 503
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 299 CGACAGAGACGGAGATGGTCTCATATCTCCACTTGAGTTGGGAGAAGGAATGAAAGACAT 358
Query 504 GGGGATGAAGATAACAGCAGAAGAAGCGGAGCATATGGTCCGAGAAGCCGACCTTGATGG 563
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 GGGGATGAAGATAACAGCGGAAGAAGCGGAGCATATGGTCCGAGAAGCCGACCTCGATGG 418
Query 564 CGATGGTTTTCTTTCTTTCCACGAATTCTCTAAAATGATGATTGCTGCCTCTTATTAGCA 623
||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 CGATGGTCTTCTTTCATTCCACGAATTCTCTAAAATGATGATCGCTGCCTCTTATTAGCA 478
Query 624 TTTTGTGAAATGCCATGAT 642
|| |||||||||||||||
Sbjct 479 TT--GTGAAATGCCATGAT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5