BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51930.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485550 jgi|Araly1|485550|fgenesh2_kg.5__1542__AT3G51930.1 1971 0.0
> Ahg485550 jgi|Araly1|485550|fgenesh2_kg.5__1542__AT3G51930.1
Length=1392
Score = 1971 bits (1067), Expect = 0.0
Identities = 1313/1427 (92%), Gaps = 36/1427 (3%)
Strand=Plus/Plus
Query 12 TCCAAAATAGAAACGAAATCTTGAATCTCTTGATACGATGGTGAGATCAATCCAAGAAGG 71
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1 TCCAAAATAGAAACGAAATCTTGAATCTCTTGATGCGATGGTGAGATTAATCCAAGAAGG 60
Query 72 AGTCTTGATGTCTTCATCTTCTTCCTCAACCACAAGCAACAGCAACGACTCCGACGGTTC 131
||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||
Sbjct 61 AGTCTTGATGTCTTCATCTTCGTCCTCAACGACAAGCAACAGCAACGACTCTGACGATTC 120
Query 132 TCTCAGCCCATCTGCGTCCACCAAAAGCTTCGTCCTCAACACTCTCCGTCCGCCTATCAC 191
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CCTCAGCCCATCCGCCTCCACCAAAAGCTTCGTCCTCAACACTCTCCGTCCGCCAATCAC 180
Query 192 CGGCGCGTACAAGCCACTCGCTGTTCTCTCTGCTCATGTCGGCTCTGTTTCTTCCTTAGC 251
||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||| ||
Sbjct 181 CGGCGCGTACAAGCCGCTCGCAGTCCTCTCTGCTCACGTAGGCTCTGTTTCTTCCTTGGC 240
Query 252 GCTCTGTGGTGAGTTCTTGCTGAGTGCGTCTCAGGGAAAAGATATCATCGTTTGGCAACA 311
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GCTCTGTGGTGAGTTCTTGTTGAGTGCGTCTCAGGGAAAAGACATCATCGTTTGGCAACA 300
Query 312 GCCTGATCTCAAGATCTTTGCGAAATTCGGACAAGGTGATGGGTCTGTGAAGGCTTTGGT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GCCTGATCTCAAGATCTTTGCGAAATTCGGACAAGGTGATGGGTCTGTGAAGGCTCTGGT 360
Query 372 CAGCGTGGGAAGCAAAGTGTTCACGGCGCATCAAGATAGTAGAATCAGAGTTTGGAAAGT 431
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 CAGCGTGGGAAGCAAAGTGTTCACGGCGCATCAAGACAGTAGAATCAGAGTTTGGAAAGT 420
Query 432 TTCTCGGAGAAACTCTGAGAATGCTTTCAGGCTTGTTGATACACTTCCCACGACTAAAGA 491
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 421 TTCTCGGAGAAACTCTGAGAATGCTTTCAGGCTTGTCGACACGCTTCCCACGACTAAAGA 480
Query 492 CTATCTGGGGAAGTTTATGAAACAGAGCAATTACGTTCAGACGAGGAGGAACCATAAGCG 551
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 CTATTTGGGGAAGTTTATGAAACAGAGCAATTACGTTCAGACGAGGAGGAATCATAAGCG 540
Query 552 TCTCTGGATTGAACACGCCGATAGCATTTCGTGCCTTGCGGTACACGCTGGGATAATCTA 611
||||||||| |||||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct 541 TCTCTGGATCGAACACGCTGACAGCATTTCGTGCCTTGCGGTCCACGCCGGGATAATCTA 600
Query 612 CTCTGGATCGTGGGATAAGACTCTCAAAGTCTGGAGACTGTCGGATCTCAAGTGTCTTGA 671
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 601 CTCTGGATCGTGGGATAAGACTCTCAAAGTCTGGAGATTGTCGGATCTCAAGTGCCTTGA 660
Query 672 ATCGATCAAGGCTCATGATGACGCAATCAATGGTCTTGTCGCCGGAGATGGCAGGGTATA 731
||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||
Sbjct 661 ATCGATCAAGGCTCACGACGACGCAATCAATGGCCTTGTCGCCGGAGATGGCAGAGTATA 720
Query 732 CTCTGCTTCCGCAGATGGGAAGGTCAAGATATGGGGGAAAGAGAAGAGAAAGCAGATTGA 791
||||||||| ||||| |||||| ||||||| ||||||| ||| || ||||||||||||||
Sbjct 721 CTCTGCTTCTGCAGACGGGAAGATCAAGATTTGGGGGAGAGATAAAAGAAAGCAGATTGA 780
Query 792 GTCTACTTCTTCCTCTTCCTCTTCTTTACATGTTTTGAAGGCTACGTTGGAGGGTCGTGC 851
||||| | | ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 781 GTCTA---C-T--TCTTCCTCTTCTTTACATGTTCTGAAGGCTACATTGGAGGGTCGTGC 834
Query 852 AGAGGTGTCAGTGAACTCGGTGGTGGTTTCCGGTGACGGTAATTGGGTATACGGAGGAGG 911
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 835 AGAGGTTTCAGTGAACTCGGTGGTGGTTTCCGGTGACGGGAATTGGGTATACGGAGGAGG 894
Query 912 ATCAGACGGGTTTGTGATCGGATGGGAGAAGAAAGAGAAAGAAGG-AGACTTTGAGGAAT 970
|||||| ||||||||||| || |||||||||| |||||||| || |||||| |||||||
Sbjct 895 ATCAGATGGGTTTGTGATGGGGTGGGAGAAGAGAGAGAAAG-GGGAAGACTTGGAGGAAT 953
Query 971 GGAGATTAGGGTTTGAGACAAGAGGACATAACATGGCAGTTCTGTGTATGTGTGTAGTTG 1030
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GGAGATTAGGGTTTGAGATGAGAGGACATAACATGGCAGTTCTGTGTATGTGTGTAGTTG 1013
Query 1031 GGGAAATGGTATGCAGTGGATCGGCTGATAAGAGCATTGGGTTGTGGAGGAGAGAAGTGA 1090
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1014 GGGAAATGGTGTGTAGTGGATCCGCTGATAAGAGCATTGGGTTGTGGAGGAGAGAAACGA 1073
Query 1091 CTGGCATGCTCTGTAAATTCGGAGTCATACATGGCCATGAAGGTCCGGTCAAATGCTTAC 1150
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1074 GTGGCATACTCTGTAAATTTGGAGTCATACATGGCCATGAAGGTCCGGTCAAATGCTTGC 1133
Query 1151 AAGCGTCGCCAAACAATGTCGGTGCTGGCTTCATGCTTTACAGTGGAGGCCTTGACAAGA 1210
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AAGCTTCGCCTAACAATGTCGGTGCTGGCTTCATGCTTTACAGTGGAGGCCTTGACAAGA 1193
Query 1211 GTCTCAGGGTTTGGTGGGTACCAAAACAAGACAACTTAGAAGAGAAGAAATCAAGCTTTA 1270
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1194 GTCTCAGGGTTTGGTGGGTACCAAAACATGACAACTTAGAAGAGAAGAAATCAAGTTTTA 1253
Query 1271 AGACATTGTTGACGCAAAAGGAATGAGTGAAAGATATAGTACttttttttttttttttgg 1330
|||||||||||| |||||||| ||||||||||||| | || ||| | | |||| ||
Sbjct 1254 AGACATTGTTGATGCAAAAGGGATGAGTGAAAGAT-TGGT--TTTCATATACGTTTT-GG 1309
Query 1331 attggttttcatatacgttttggtttatatttgtaatttgttattcattttgTAAAGTCA 1390
|| | |||| || | | | |||||| | ||||||||||||||||||
Sbjct 1310 -TT--T----ATAT---TT--G-T--A-ATTTGT--T-----ATTCATTTTGTAAAGTCA 1346
Query 1391 TGAGGGATTTTTTCAAGAAATTATATGAATTGAATTCTTATTTTGTT 1437
|||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1347 TGAGGGATTTTTCCAAGAAAT-ATATGAATTGAATTCTTATTTTGTT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5