BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51940.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485551 jgi|Araly1|485551|fgenesh2_kg.5__1543__AT3G51940.1 2122 0.0
> Ahg485551 jgi|Araly1|485551|fgenesh2_kg.5__1543__AT3G51940.1
Length=1746
Score = 2122 bits (1149), Expect = 0.0
Identities = 1563/1748 (89%), Gaps = 88/1748 (5%)
Strand=Plus/Plus
Query 20 TCCAATTTCCAATTCGTTTGCTTCATCAGCTCCCAAATTCTCCCGCTGACCCCTAAGTTC 79
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||
Sbjct 6 TCCAATTTCCAATTCG-TTGCGTCTTCAGCTCCCAAATTCTCCCGCTGACCCCTAATTTC 64
Query 80 TACAAAATCCATCATCGTCGATTGAGA-TTCTTTATGGGAAAGTGGAATCATCGATCCAG 138
| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
Sbjct 65 TCCAAAATCCATCACCGTCGATTGAGATTTCTCAATGGGAAAGTGGAATCATCGATCCCG 124
Query 139 ACACCACCGTCGCAGGTCTCCTGAGCGGTGGTATAGCGGA-CGTCA---ATCTTCTTCTT 194
| ||||||||||||| ||||||||||| ||||||||| || |||| |||||||||||
Sbjct 125 ATACCACCGTCGCAGATCTCCTGAGCGATGGTATAGC-GAGTGTCATTCATCTTCTTCTT 183
Query 195 CTTCAGACGATGGGATTCCAG-TTTGGGAAAAGAGATTCTGTGAAGTGATTGGATCAGTA 253
||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 184 CTTCAGACGATGGGATTCC-GAAATGGGAAAAGAGATTCTGTGAGGTGATTGGATCAGTG 242
Query 254 CCATGGCAAAAAGTTGTTGAAGCTAAAGACTTTAAGAGCTGGTATAATGGTAATGTTATC 313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CCATGGCAAAAAGTTGTTGAAGCTAAAGACTTTAAGAGCTGGTATAATGGTAATGTTATT 302
Query 314 ACTTGGGATGATTCTGCTTGCGAAGACACTTTTCACAATGAGAAGAAGCGGTTTTGGTCA 373
|||||| |||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 303 ACTTGGAATGACTCTGCTTGCGAAGAGACTTTTCATAATGAGAAGAAGCGATTTTGGTCA 362
Query 374 CAAGTTAATGGTCTTCATTGTGATGTTTCTATTCCTGATCCTGATCTTTACATTAGTGAA 433
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 363 CAAGTTAATGGTCTTCATTGTGATGTGTCTCTTCCTGATCCTGATCTTTACATTAGTGAA 422
Query 434 GTAGATTGGGATACTTTTGTTGACCCGGAACTGATTAGAG-ATTTAGAAAAGGCTTACTT 492
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 423 GTAGATTGGGATACTTTTGTTGACCCGGAACTGATTA-AGGATTTAGAAAAGGCTTACTT 481
Query 493 TGCTCCTCCTGATGATGTGAATATTGGTTTTAAACGGGGGCGTGGGGATAAGAATTGGAG 552
||||||||||||||| |||||||||||||||||||| |||| | |||| |||||||||
Sbjct 482 TGCTCCTCCTGATGAAGTGAATATTGGTTTTAAACGACTGCGTCGAGATAGGAATTGGAG 541
Query 553 TGGTTGTGACACAGTGCCTG--A-GG---CTCGTATGTTAGAAACTCCATGGAAAAATAG 606
||||||||| | |||||||| | || |||||||||||||||||||||||||||||||
Sbjct 542 TGGTTGTGAAATAGTGCCTGTTAAGGAGGCTCGTATGTTAGAAACTCCATGGAAAAATAG 601
Query 607 TGATGACATT-AT--TGA-A----A-CGGGGAAGAAATCTAGTGGATGGAACCTAACAGA 657
||| | | | || || | | ||||||||||||| | ||||||||||||||||||
Sbjct 602 TGACGCCGTCCATGATGTTAGTGCATCGGGGAAGAAATCGAATGGATGGAACCTAACAGA 661
Query 658 -GG--GTA--G-TT--C---T---T-GGGA-AG--CT----AAG-C---CTT-GTTGTGT 690
|| ||| | || | | | ||| || || ||| | | | |||||||
Sbjct 662 AGGTAGTACTGATTATCCGATAGATAGGGGGAGTTCTTGGGAAGGCAAGCCTAGTTGTGT 721
Query 691 AAACGAGAAAGCAAATGATACAGCTTCAGGGGGTTGTTTGACGACTGAGGAATGGAGGGA 750
||||||||||| |||||||||| | || ||||| |||||||||||||||||||||| |||
Sbjct 722 AAACGAGAAAGTAAATGATACAACATCTGGGGGATGTTTGACGACTGAGGAATGGAAGGA 781
Query 751 GAATCAGTGGATAGCCAAAGATAGGGTTAATGACAGTTGGGAGTACTCGGGCCAGGGAAA 810
||| ||||||| | | |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 782 GAACCAGTGGAGAACAAAAGATAGGGTTAATGACTGTTGGGAGAACTCGGGCCAGGGAAA 841
Query 811 GGATGATGGATGGGATAAGTCAGGGCACCAAAACAAGAAAGTAAAAGGTTCTG-AAGAGT 869
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 842 CGATGATGGATGGGATAAGTCAGGGCACCAAAACAAGAAAGTAAAAGGTTCTGCAAGTGT 901
Query 870 ---A--T-AA-A--A-AGA-T-C--GACAATCCTTGGGAAGCCCAGCCTAGTTGTATAAA 915
| | || | | | | | | |||||||||||||||||||||||||||||||||||
Sbjct 902 CCCAGCTGAAGAGGATAAAATGCTCGACAATCCTTGGGAAGCCCAGCCTAGTTGTATAAA 961
Query 916 AGAGACAGCAAAAGATACCACTTGGGGAGGTTGCTCTGGTGAGGGATGGGAGGATAGAGG 975
||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 962 AGAGACAGCAAAAGACACCACTTGGGGAGGTTTCTCTGGTAAGGGATGGGAGGATAGAGG 1021
Query 976 TTGGAATAATGATTCTTGGGGCAGTGGGGGATGGGATAACCGGGATTTGGGAAATCAAGG 1035
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 1022 TTGGAATAATGATTCTTGGGGAAGTGGTGGATGGGAAAACCGGGATTTGGGAAATCAAGG 1081
Query 1036 TATGGAGATGAAGGAGTGGCGTGGTAAAGGATATAGTCGAGATTTTCGGGAGCCTAAGGG 1095
||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1082 TATAGAGATGAAGGAATGGCGTGGTAAAGGATATAGTCGAGATATTCGGCAGCCTAAGGG 1141
Query 1096 TTGTAATCCATGGAAAGGTGGGTTTGTGCCTGACAATGTAGCTTTCAGAGAATCTGGGGT 1155
|| |||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||
Sbjct 1142 TTATAATCCATGGAAAGGTGGCTATGTACCTGACAATGTAGCTTTCAGAGAAACTGGGGT 1201
Query 1156 AAATGCAGGCGGTTGGCAAACATGTAGAGGGAGTGAGACAAAGCAAATAAATTGGGATGT 1215
|||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 1202 GAATGCAGGTGGTTGGCAAACATGTAGAGGGCGCGAGACAAAGCAAAGAAATTGGGATGT 1261
Query 1216 GAAACGAGCCAGTGATGGTTGGGGTAGGCAAAATGACAATGCAGCTTTGAGAGAATATGG 1275
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1262 GAAACAAGCCAGTGATGGTTGGGGTAGGCAAAATGACAATGCAGCTCTGAGAGAATATGG 1321
Query 1276 GGCAAATGCAGGTGATTGGCAAAGACGTAGAGGGTGTGAGGGAAATCAAAGAAACTGGGA 1335
|||||||||||| ||||||||| |||||||| | |||||| ||||||| |||| |||||
Sbjct 1322 GGCAAATGCAGGCAATTGGCAAACACGTAGAGTGAGTGAGGCAAATCAACGAAATTGGGA 1381
Query 1336 CGCAAAACGAACGGGTGATGGTTGGGGTAGGCAAAATAAGGAAAGAGTTGACTCATATGG 1395
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1382 CGCAAAACGAACGAGTGATGGTTGGGGTAGGCAAAATAAGGAAAGAGATGACTCATATGG 1441
Query 1396 CTACCATTCTAACTACAAAAACTCATGGCCTAGAAGAGATGATTATCAGAACAGGAAGGT 1455
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1442 CTACCATTCTAACTACAAAAACTCATGGCCCAGAAGAGATGATTATCAGAACAGGAAGGT 1501
Query 1456 CAATTTCTCAACTAAGTAAACCAAATGATCCATTGTTTTTTGTTATGttttttttttttt 1515
|||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1502 CAATTTCTCAGCTAAGTAAACCAAATGATCCATTGTTTTTTGTGATGTGTTTTTTTTT-- 1559
Query 1516 tGTGTTTGAAGTCTTAGCTTGTTATGGTCTGTGCAGGCAGTGTAGTTTTAGCTTAGCCAT 1575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 -GTGTTTGAAGTCTTAGCTTGTTATGGTCTGTGCAGGCAGTGTAGTTTTAGCTTAGCCAT 1618
Query 1576 TGAC-TTCCATGTTAACTCAAA-AG-----G-CATGGTTTTGTGTTTCCACTTCAGAATT 1627
|||| |||||||||| |||||| || | ||||||||| ||||||||||||||||||
Sbjct 1619 TGACCTTCCATGTTATCTCAAAGAGTCAAAGGCATGGTTTTATGTTTCCACTTCAGAATT 1678
Query 1628 AGCATATGTAGAGTATATA---G--G----AGTACCCTTTTTGATGATAATGTCTCATAC 1678
|||||||||||| |||||| | | ||||||||||||||||||||||| ||||||
Sbjct 1679 AGCATATGTAGAATATATACAAGTAGTCGGAGTACCCTTTTTGATGATAATGTTTCATAC 1738
Query 1679 ATACTAAA 1686
||||||||
Sbjct 1739 ATACTAAA 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5