BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51950.1 Length=2540 Score E Sequences producing significant alignments: (Bits) Value Ahg485553 jgi|Araly1|485553|fgenesh2_kg.5__1545__AT3G51950.1 4017 0.0 Ahg486853 jgi|Araly1|486853|fgenesh2_kg.5__2845__AT3G63450.1 331 1e-89 > Ahg485553 jgi|Araly1|485553|fgenesh2_kg.5__1545__AT3G51950.1 Length=2518 Score = 4017 bits (2175), Expect = 0.0 Identities = 2433/2550 (95%), Gaps = 48/2550 (2%) Strand=Plus/Plus Query 7 TTTGCTTTTTAAAAACAGTTTATTACACAAtctctctgtgttt-t-t-tctatctctctc 63 ||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||| Sbjct 1 TTTGCTTTTTAAAAACAGTTTATTACACAATCTCTCTGTGTTTCTCTCTCTCTCTCTCTC 60 Query 64 tttcttcttcCACTCGTGAAAGAAAGACCAGAGAGTTTTCTCCTGATCCacacaacaaca 123 ||| ||||||||||||| |||||||||||||||||||||||||| | | || ||| Sbjct 61 TTTGTTCTTCCACTCGT----GAAAGACCAGAGAGTTTTCTCCTGAT---C-C-AC-ACA 110 Query 124 acaacacaGAGATCCCAAATCCGGAAGATATCTTCTTCTCTCATAACTCAGTTTACTCAG 183 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 111 ACAACACAGAGATCCCAAATCCGGAAGATATCTTCTTCTCTCATAACTCAGTTTACTTAG 170 Query 184 ATTCACTGAAACATACAATTAAGTTAACCGTCAGTCTCTCACCTGCAGCAAAATTCACTC 243 || ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| Sbjct 171 ATCCACTGAAACATACAATTAAGTTAACCGTCAGTCTCACACCTGCAGAAAAAATCACTC 230 Query 244 TTCTGCTAATAATGTT-CTCCAC--AGAGATTCATCTATTGATCATTTTGACTTTTTCAG 300 |||| ||||||||||| |||||| |||||||||| ||| |||||||||||||||||||| Sbjct 231 TTCTTCTAATAATGTTCCTCCACAGAGAGATTCATGTATCGATCATTTTGACTTTTTCAG 290 Query 301 GAACCAGAGATGAAAAATTATAGTT-AAGGTTAGTAGTAGTAGATAGGTTTAATAAATTT 359 |||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| Sbjct 291 GAACTAGAGATGAAAAATTATAGTTAAAGCTTAGAAGTAGTAGATAGGTTTAATAAATTT 350 Query 360 GTAGTTAAGTAACCCaaaaaaaTAACATTAAACTAAAATCCAACACTAGAAACCAGAGAG 419 ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 351 GTAGTTAAGAAAGCCAAAAAAAAAACATTAAACTAAAATCCAACACTAGAAACCAGAGAG 410 Query 420 ACCCTCTTAACGACAACAACCTCTCTGTACACAAGacaacaaacactctctacaaaaaca 479 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 A-CCTCTTAACGACAACAACCTCTCTGTACACAAGACAACAAACACTCTCTACAAAAACA 469 Query 480 ctactctttccttcttcttctctctactctattctaattctaAAGAGAGAGAGAAAAGCT 539 |||||| || | |||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 470 CTACTC-TT-C--CTTCTTCTCTCTACTCTAATCTAATTCAAAAGAGAGAGAGAAAAGCC 525 Query 540 ATGGATGGATATGAAGCTACTAGGATTGTGCTCTCTAGAATCCAAAGCTTAGACCCTGAA 599 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 ATGGATGGGTATGAAGCTACTAGGATTGTGCTCTCTAGAATCCAAAGCTTAGACCCTGAA 585 Query 600 AACGCATCAAAGATCATGGGTCTTCTCCTTCTTCAAGATCACGGTGAAAAAGAGATGATA 659 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 586 AACGCATCAAAGATCATGGGTCTTCTCCTTCTTCAAGATCACGGTGAGAAAGAGATGATA 645 Query 660 AGGCTAGCTTTTGGTCCAGAGACTCTTGTTCACTCTGTTATAGTGAAAGCCAAGAAAGAG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 AGGCTAGCTTTTGGTCCAGAGACTCTTGTTCACTCTGTTATAGTGAAAGCCAAGAAAGAG 705 Query 720 TTAGGTCTCATGAACTGTTCAAGGTCTCCGTGGAGTCATCAAGATGAGTTGATTAGCCCT 779 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 706 TTAGGTCTCATGAACTGTTCAAGGTCTCCATGGAGTCATCAAGATGAGTTAATTAGCCCT 765 Query 780 AAGAACAACCGTGGCTCTTCACTCAATCCAGCTTCTTTGCCCTTTTACGCTAATGGAGGA 839 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 766 AAGAACAACCGTGGCTCTTCTCTCAATCCTGCTTCTTTGCCCTTTTACGCTAATGGAGGA 825 Query 840 AGATCTTCTAGGGATTTAACCAACGATTTCGAGCTCATGGATGATATGAACTCCAGAAGT 899 |||||||||||||||||||||||||| |||||||||||||||||| | || || ||||| Sbjct 826 AGATCTTCTAGGGATTTAACCAACGACTTCGAGCTCATGGATGATGTTAATTCAAGAAG- 884 Query 900 ACTGATTTTTTGGGCTCTGTGCATGCGAGAAGCGGTAGCTGCGTTTTGGACGGTTTAGGG 959 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 885 --TGACTTTTTGGGCTCTGTGCATGCGAGAAGCGGTAGCTGTGTTTTGGACGGTTTAGGG 942 Query 960 TATGGTGGTGATTCTGATTTAGGGTTTGGAGGTGTGCCCTGTTCTTACTTCGCTAGAGGC 1019 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 943 TATGGTGGTGATTCTGATTTAGGGTTTGGAGGTGTCCCCTGTTCTTATTTCGCTAGAGGC 1002 Query 1020 TTCTGCAAAAACGGAGCTAGCTGCAGATTCGTCCACAGTGATGGAGGAGCTGATTTGGTT 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1003 TTCTGCAAAAACGGAGCTAGCTGCAGATTCGTCCACAGTGATGGAGGAGCTGATTTGGTT 1062 Query 1080 GGCTCCCCAAGCAGAATCGAGCTTCTTAGGTCTAACTCGGTACCCCCAAGACTTGCTCAC 1139 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1063 GGCTCTCCAAGCAGAATCGAGCTTCTTAGGTCTAACTCGGTACCTCCAAGACTTGCTCAC 1122 Query 1140 CACTTCATGACTCGCTCTTCTCTCCCTTCTTTTTCAACTAAAGGTGTTAACTTGCAGCAA 1199 ||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| Sbjct 1123 CACTTCATGACTCGCTCTTCTCTTCCTTCTTTTTCACCTAAAGCTGTTAACTTGCAGCAA 1182 Query 1200 AACGATGTTCAAAGAGCTGCTGCTGCTTTGATGATAGGAGATGAATTGCAGAAGCTTGGA 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1183 AACGATGTTCAAAGAGCTGCTGCTGCTTTGATGATAGGAGATGAATTGCAGAAGCTTGGA 1242 Query 1260 AGATGGAGACCTGAAAGGATTGATCTTTCTGCTATGGCTTGTCCAGCTTCAAGACAGATC 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1243 AGATGGAGACCTGAAAGGATTGATCTTTCTGCTATGGCTTGTCCAGCTTCAAGACAGATC 1302 Query 1320 TATCTGACATTCCCTGCCGACAGTAGGTTCAGGGAGGAAGATGTGTCCAATTACTTCAGT 1379 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1303 TATCTGACATTTCCTGCCGACAGTAGGTTCAGGGAGGAAGATGTGTCCAATTACTTCAGT 1362 Query 1380 ACTTTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGAATGTTTGGTTTT 1439 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1363 ACTTTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGGATGTTTGGTTTT 1422 Query 1440 GTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTCTCGCCAAAGGGAATCCTCACTTT 1499 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1423 GTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTCTTGCCAAAGGGAATCCTCACTTT 1482 Query 1500 GTGTGTGATTCCAGAGTTCTTGTCAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAA 1559 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1483 GTGTGTGATTCCAGAGTTCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAA 1542 Query 1560 TACAGAACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCCTTGATTCTAGCCCT 1619 |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1543 TACAGAACTAACCAGACAACAGAGCGAGAATTGTCCCCAACAGGCCTTGATTCTAGCCCC 1602 Query 1620 AGGGACGTTCTAGGAGGGAGAGGGTTTTATAACAACACTCAAGATGTGTTGTGGAGGAGT 1679 ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1603 AGGGATGTTCTAGGTGGGAGAGGGTTTTATAACAACACCCAAGATGTGTTGTGGAGGAGT 1662 Query 1680 AAGTTTGAAGAAGAGATTCTTGAACTTCAGAGCAGAAGGCTGATGAATCTGCAGCTTCTT 1739 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1663 AAGTTTGAAGAAGAGATTCTTGAGCTTCAGAGCAGAAGGCTGATGAATCTGCAGCTTCTT 1722 Query 1740 GACGTCAAGAAGCATTTCCAACTCAATTCCCCTACCAACATTCACTCTCCGAATCCTTTC 1799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1723 GACGTCAAGAAGCATTTCCAACTCAATTCCCCTACCAACATTCACTCTCCGAATCCTTTC 1782 Query 1800 AGCCAATCACTTATATCTCCACG-CCCATTGTCCGTGATCAAGAGAGAGTATGATGGAGG 1858 |||||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||| Sbjct 1783 AGCCAATCACTTATATCTCC-CGGCCCATTGTCCATGATCAAGAGAGAGTATGAAGGAGG 1841 Query 1859 AGAGAAAGGGAAAGGAAGTTCTAAAGAAGGATCTGATGATGATACAATGAATCTACCAGA 1918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1842 AGAGAAAGGGAAAGGAAGTTCTAAAGAAGGATCTGATGATGATACAATGAATCTACCAGA 1901 Query 1919 GAGGTTGGAGGATAGCTTGCCAGATAGTCCGTTTGCATCGCCCGCTCATCATTTGCTTCT 1978 |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 1902 GAGGTTGGAGGATAGCTTGCCAGACAGTCCGTTTGCGTCGCCCGCCCATCATTTGCTTCT 1961 Query 1979 GTTTGCTGATTCTGCTGACAATAACGGATCGGATCTGTGGTCGCCTTCTTCTGATAATGA 2038 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1962 GTTTGCTGATTCTGCAGACAATAACGGATCGGATTTGTGGTCGCCTTCTTCTGATAATGA 2021 Query 2039 TGATAATTCTACTCCTTCTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCC 2098 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 2022 TGATAATTCTACTCCTTCTACACTCTCTGACTCCTTCAACTCTTTCAACTGCCAAATGCC 2081 Query 2099 AAGGTTACCGGCGATTGGAATGTTACCCGGTAGGGGTGGACCAACCTGTCGTGTTGGGAT 2158 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2082 GAGGTTACCGGCGATTGGAATGTTACCCGGTAGGGGTGGACCAACCTGTCGTGTTGGGAT 2141 Query 2159 ATAAACAGGAAGTGAAGTAAGAAAAGaaaaaaactgataaaatagagagacccttaataa 2218 |||||||||||| ||| |||||||| ||| ||||||| ||||||||||||||||||| Sbjct 2142 ATAAACAGGAAGAGAACTAAGAAAA-AAA----CTGATAATATAGAGAGACCCTTAATAA 2196 Query 2219 ccaaaaagatgcagaggtgtaaaaaataaaaaGCAGGAAATTTGATGTAAGAGATAGGAG 2278 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 2197 CCAAAAAGATGCAGAGGTGTATAAAATAAAAAGCAGGAAATTTGATGTAAGAGATAGAAG 2256 Query 2279 AAGAGAAAGAAGGAAGATTGTTGTACCATTTCTCTAGTTTTAatgt-gttatgtgatgat 2337 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2257 AAGAGAAAGAAGGAAGATTGTTGTACCATTTCTCTAGTTTTAATGTTGTAATGTGATG-- 2314 Query 2338 ggaccacacaagatgatgtaatatgatatgatatgatatatataatataGGACAAGAAGT 2397 | |||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||| Sbjct 2315 G-ACCACACAAGATGATGTAATATGATATGATAT-ATATA-ATA-TA--GGACAAGAAGT 2368 Query 2398 GTAATCTCTCTAAAGATATACAAAAGAAAAGAGAGATTATCATTTGAGTTTGAAAAGTCA 2457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2369 GTAATCTCTCTAAAGATATACAAAAGAAAAGAGAGATTATCATTTGAGTTTGAAAAGTCA 2428 Query 2458 ATATGTTCTTGTCCGTGCTAGTTATTACCCTCTCACTCTAACTA----CT-CTC-C-AAC 2510 |||||||||||||| |||||||| |||||||||||||||||||| || ||| | ||| Sbjct 2429 ATATGTTCTTGTCCTTGCTAGTTGTTACCCTCTCACTCTAACTAGTAACTACTCTCCAAC 2488 Query 2511 TTGGGAATCCAGAGATATCAGCTTTTGGTG 2540 |||||||||||||||||||| ||||||||| Sbjct 2489 TTGGGAATCCAGAGATATCAACTTTTGGTG 2518 > Ahg486853 jgi|Araly1|486853|fgenesh2_kg.5__2845__AT3G63450.1 Length=1350 Score = 331 bits (179), Expect = 1e-89 Identities = 331/402 (82%), Gaps = 20/402 (5%) Strand=Plus/Plus Query 1179 AAAGGTGTTAACTTGCAGCAAAACGATGTTC-AAAG-AGCTGCTGCTGCTTTGATGATAG 1236 |||||||||||||||||||| | || | | |||| || ||||||||| ||||||| | Sbjct 352 AAAGGTGTTAACTTGCAGCAGAGTGAAG-CCAAAAGCAG-AGCTGCTGCTCTGATGATGG 409 Query 1237 GAGATGAATTGCAGAAGCTT-GGAAGATGGAGACCTGAAAGGATTGATCTTTCTGCTATG 1295 | ||||| ||||| ||| || ||||||||||| || || ||||| || ||||| || ||| Sbjct 410 GCGATGACTTGCACAAG-TTGGGAAGATGGAGGCCAGAGAGGATCGACCTTTCCGCCATG 468 Query 1296 GCTTGTCCAGCTTCAAGACAGATCTATCTGACATTCCCTGCCGACAGTAGGTTCAGGGAG 1355 || || || ||||| ||||||||||||||||| ||||| || ||||||| |||||||| Sbjct 469 GCCTGCCCGGCTTCCAGACAGATCTATCTGACTTTCCCGGCTGACAGTATCTTCAGGGAA 528 Query 1356 GAAGATGTGTCC-A--A-TT-A-C----T--T-CAGTACTTTTGGACCAGTTCAAGATGT 1402 |||||||| ||| | | || | | | | |||||| ||||| |||||||| || || Sbjct 529 GAAGATGTTTCCGACTACTTCAGCATGGTGGTGCAGTAC-TTTGGGCCAGTTCAGGACGT 587 Query 1403 GAGGATACCATATCAGCAAAAGAGAATGTTTGGTTTTGTGACATTTGTGTACCCTGAGAC 1462 ||||||||| || ||||| ||||| |||||||| || ||||| || ||||||| || || Sbjct 588 GAGGATACCGTACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGATAC 647 Query 1463 TGTTAAGAGCATTCTCGCCAAAGGGAATCCTCACTTTGTGTGTGATTCCAGAGTTCTTGT 1522 || ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 648 GGTGAAGAGCATTCTGGCCAAAGGGAACCCTCACTTTGTGTGTGATTCCAGGGTTCTTGT 707 Query 1523 CAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAATACAG 1564 ||||||||||||||||||||||||||||| ||||| ||||| Sbjct 708 TAAGCCTTACAAGGAGAAAGGCAAAGTCCCAGACAAGTACAG 749 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95758875930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5