BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51950.1
Length=2540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485553 jgi|Araly1|485553|fgenesh2_kg.5__1545__AT3G51950.1 4017 0.0
Ahg486853 jgi|Araly1|486853|fgenesh2_kg.5__2845__AT3G63450.1 331 1e-89
> Ahg485553 jgi|Araly1|485553|fgenesh2_kg.5__1545__AT3G51950.1
Length=2518
Score = 4017 bits (2175), Expect = 0.0
Identities = 2433/2550 (95%), Gaps = 48/2550 (2%)
Strand=Plus/Plus
Query 7 TTTGCTTTTTAAAAACAGTTTATTACACAAtctctctgtgttt-t-t-tctatctctctc 63
||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 1 TTTGCTTTTTAAAAACAGTTTATTACACAATCTCTCTGTGTTTCTCTCTCTCTCTCTCTC 60
Query 64 tttcttcttcCACTCGTGAAAGAAAGACCAGAGAGTTTTCTCCTGATCCacacaacaaca 123
||| ||||||||||||| |||||||||||||||||||||||||| | | || |||
Sbjct 61 TTTGTTCTTCCACTCGT----GAAAGACCAGAGAGTTTTCTCCTGAT---C-C-AC-ACA 110
Query 124 acaacacaGAGATCCCAAATCCGGAAGATATCTTCTTCTCTCATAACTCAGTTTACTCAG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 111 ACAACACAGAGATCCCAAATCCGGAAGATATCTTCTTCTCTCATAACTCAGTTTACTTAG 170
Query 184 ATTCACTGAAACATACAATTAAGTTAACCGTCAGTCTCTCACCTGCAGCAAAATTCACTC 243
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 171 ATCCACTGAAACATACAATTAAGTTAACCGTCAGTCTCACACCTGCAGAAAAAATCACTC 230
Query 244 TTCTGCTAATAATGTT-CTCCAC--AGAGATTCATCTATTGATCATTTTGACTTTTTCAG 300
|||| ||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 231 TTCTTCTAATAATGTTCCTCCACAGAGAGATTCATGTATCGATCATTTTGACTTTTTCAG 290
Query 301 GAACCAGAGATGAAAAATTATAGTT-AAGGTTAGTAGTAGTAGATAGGTTTAATAAATTT 359
|||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 291 GAACTAGAGATGAAAAATTATAGTTAAAGCTTAGAAGTAGTAGATAGGTTTAATAAATTT 350
Query 360 GTAGTTAAGTAACCCaaaaaaaTAACATTAAACTAAAATCCAACACTAGAAACCAGAGAG 419
||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 351 GTAGTTAAGAAAGCCAAAAAAAAAACATTAAACTAAAATCCAACACTAGAAACCAGAGAG 410
Query 420 ACCCTCTTAACGACAACAACCTCTCTGTACACAAGacaacaaacactctctacaaaaaca 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 A-CCTCTTAACGACAACAACCTCTCTGTACACAAGACAACAAACACTCTCTACAAAAACA 469
Query 480 ctactctttccttcttcttctctctactctattctaattctaAAGAGAGAGAGAAAAGCT 539
|||||| || | |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 470 CTACTC-TT-C--CTTCTTCTCTCTACTCTAATCTAATTCAAAAGAGAGAGAGAAAAGCC 525
Query 540 ATGGATGGATATGAAGCTACTAGGATTGTGCTCTCTAGAATCCAAAGCTTAGACCCTGAA 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ATGGATGGGTATGAAGCTACTAGGATTGTGCTCTCTAGAATCCAAAGCTTAGACCCTGAA 585
Query 600 AACGCATCAAAGATCATGGGTCTTCTCCTTCTTCAAGATCACGGTGAAAAAGAGATGATA 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 586 AACGCATCAAAGATCATGGGTCTTCTCCTTCTTCAAGATCACGGTGAGAAAGAGATGATA 645
Query 660 AGGCTAGCTTTTGGTCCAGAGACTCTTGTTCACTCTGTTATAGTGAAAGCCAAGAAAGAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGGCTAGCTTTTGGTCCAGAGACTCTTGTTCACTCTGTTATAGTGAAAGCCAAGAAAGAG 705
Query 720 TTAGGTCTCATGAACTGTTCAAGGTCTCCGTGGAGTCATCAAGATGAGTTGATTAGCCCT 779
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 706 TTAGGTCTCATGAACTGTTCAAGGTCTCCATGGAGTCATCAAGATGAGTTAATTAGCCCT 765
Query 780 AAGAACAACCGTGGCTCTTCACTCAATCCAGCTTCTTTGCCCTTTTACGCTAATGGAGGA 839
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 766 AAGAACAACCGTGGCTCTTCTCTCAATCCTGCTTCTTTGCCCTTTTACGCTAATGGAGGA 825
Query 840 AGATCTTCTAGGGATTTAACCAACGATTTCGAGCTCATGGATGATATGAACTCCAGAAGT 899
|||||||||||||||||||||||||| |||||||||||||||||| | || || |||||
Sbjct 826 AGATCTTCTAGGGATTTAACCAACGACTTCGAGCTCATGGATGATGTTAATTCAAGAAG- 884
Query 900 ACTGATTTTTTGGGCTCTGTGCATGCGAGAAGCGGTAGCTGCGTTTTGGACGGTTTAGGG 959
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 885 --TGACTTTTTGGGCTCTGTGCATGCGAGAAGCGGTAGCTGTGTTTTGGACGGTTTAGGG 942
Query 960 TATGGTGGTGATTCTGATTTAGGGTTTGGAGGTGTGCCCTGTTCTTACTTCGCTAGAGGC 1019
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 943 TATGGTGGTGATTCTGATTTAGGGTTTGGAGGTGTCCCCTGTTCTTATTTCGCTAGAGGC 1002
Query 1020 TTCTGCAAAAACGGAGCTAGCTGCAGATTCGTCCACAGTGATGGAGGAGCTGATTTGGTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TTCTGCAAAAACGGAGCTAGCTGCAGATTCGTCCACAGTGATGGAGGAGCTGATTTGGTT 1062
Query 1080 GGCTCCCCAAGCAGAATCGAGCTTCTTAGGTCTAACTCGGTACCCCCAAGACTTGCTCAC 1139
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1063 GGCTCTCCAAGCAGAATCGAGCTTCTTAGGTCTAACTCGGTACCTCCAAGACTTGCTCAC 1122
Query 1140 CACTTCATGACTCGCTCTTCTCTCCCTTCTTTTTCAACTAAAGGTGTTAACTTGCAGCAA 1199
||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct 1123 CACTTCATGACTCGCTCTTCTCTTCCTTCTTTTTCACCTAAAGCTGTTAACTTGCAGCAA 1182
Query 1200 AACGATGTTCAAAGAGCTGCTGCTGCTTTGATGATAGGAGATGAATTGCAGAAGCTTGGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AACGATGTTCAAAGAGCTGCTGCTGCTTTGATGATAGGAGATGAATTGCAGAAGCTTGGA 1242
Query 1260 AGATGGAGACCTGAAAGGATTGATCTTTCTGCTATGGCTTGTCCAGCTTCAAGACAGATC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 AGATGGAGACCTGAAAGGATTGATCTTTCTGCTATGGCTTGTCCAGCTTCAAGACAGATC 1302
Query 1320 TATCTGACATTCCCTGCCGACAGTAGGTTCAGGGAGGAAGATGTGTCCAATTACTTCAGT 1379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TATCTGACATTTCCTGCCGACAGTAGGTTCAGGGAGGAAGATGTGTCCAATTACTTCAGT 1362
Query 1380 ACTTTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGAATGTTTGGTTTT 1439
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1363 ACTTTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGGATGTTTGGTTTT 1422
Query 1440 GTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTCTCGCCAAAGGGAATCCTCACTTT 1499
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1423 GTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTCTTGCCAAAGGGAATCCTCACTTT 1482
Query 1500 GTGTGTGATTCCAGAGTTCTTGTCAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAA 1559
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1483 GTGTGTGATTCCAGAGTTCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAA 1542
Query 1560 TACAGAACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCCTTGATTCTAGCCCT 1619
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1543 TACAGAACTAACCAGACAACAGAGCGAGAATTGTCCCCAACAGGCCTTGATTCTAGCCCC 1602
Query 1620 AGGGACGTTCTAGGAGGGAGAGGGTTTTATAACAACACTCAAGATGTGTTGTGGAGGAGT 1679
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1603 AGGGATGTTCTAGGTGGGAGAGGGTTTTATAACAACACCCAAGATGTGTTGTGGAGGAGT 1662
Query 1680 AAGTTTGAAGAAGAGATTCTTGAACTTCAGAGCAGAAGGCTGATGAATCTGCAGCTTCTT 1739
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1663 AAGTTTGAAGAAGAGATTCTTGAGCTTCAGAGCAGAAGGCTGATGAATCTGCAGCTTCTT 1722
Query 1740 GACGTCAAGAAGCATTTCCAACTCAATTCCCCTACCAACATTCACTCTCCGAATCCTTTC 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 GACGTCAAGAAGCATTTCCAACTCAATTCCCCTACCAACATTCACTCTCCGAATCCTTTC 1782
Query 1800 AGCCAATCACTTATATCTCCACG-CCCATTGTCCGTGATCAAGAGAGAGTATGATGGAGG 1858
|||||||||||||||||||| || |||||||||| ||||||||||||||||||| |||||
Sbjct 1783 AGCCAATCACTTATATCTCC-CGGCCCATTGTCCATGATCAAGAGAGAGTATGAAGGAGG 1841
Query 1859 AGAGAAAGGGAAAGGAAGTTCTAAAGAAGGATCTGATGATGATACAATGAATCTACCAGA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AGAGAAAGGGAAAGGAAGTTCTAAAGAAGGATCTGATGATGATACAATGAATCTACCAGA 1901
Query 1919 GAGGTTGGAGGATAGCTTGCCAGATAGTCCGTTTGCATCGCCCGCTCATCATTTGCTTCT 1978
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1902 GAGGTTGGAGGATAGCTTGCCAGACAGTCCGTTTGCGTCGCCCGCCCATCATTTGCTTCT 1961
Query 1979 GTTTGCTGATTCTGCTGACAATAACGGATCGGATCTGTGGTCGCCTTCTTCTGATAATGA 2038
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1962 GTTTGCTGATTCTGCAGACAATAACGGATCGGATTTGTGGTCGCCTTCTTCTGATAATGA 2021
Query 2039 TGATAATTCTACTCCTTCTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCC 2098
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 2022 TGATAATTCTACTCCTTCTACACTCTCTGACTCCTTCAACTCTTTCAACTGCCAAATGCC 2081
Query 2099 AAGGTTACCGGCGATTGGAATGTTACCCGGTAGGGGTGGACCAACCTGTCGTGTTGGGAT 2158
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 GAGGTTACCGGCGATTGGAATGTTACCCGGTAGGGGTGGACCAACCTGTCGTGTTGGGAT 2141
Query 2159 ATAAACAGGAAGTGAAGTAAGAAAAGaaaaaaactgataaaatagagagacccttaataa 2218
|||||||||||| ||| |||||||| ||| ||||||| |||||||||||||||||||
Sbjct 2142 ATAAACAGGAAGAGAACTAAGAAAA-AAA----CTGATAATATAGAGAGACCCTTAATAA 2196
Query 2219 ccaaaaagatgcagaggtgtaaaaaataaaaaGCAGGAAATTTGATGTAAGAGATAGGAG 2278
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2197 CCAAAAAGATGCAGAGGTGTATAAAATAAAAAGCAGGAAATTTGATGTAAGAGATAGAAG 2256
Query 2279 AAGAGAAAGAAGGAAGATTGTTGTACCATTTCTCTAGTTTTAatgt-gttatgtgatgat 2337
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2257 AAGAGAAAGAAGGAAGATTGTTGTACCATTTCTCTAGTTTTAATGTTGTAATGTGATG-- 2314
Query 2338 ggaccacacaagatgatgtaatatgatatgatatgatatatataatataGGACAAGAAGT 2397
| |||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||
Sbjct 2315 G-ACCACACAAGATGATGTAATATGATATGATAT-ATATA-ATA-TA--GGACAAGAAGT 2368
Query 2398 GTAATCTCTCTAAAGATATACAAAAGAAAAGAGAGATTATCATTTGAGTTTGAAAAGTCA 2457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GTAATCTCTCTAAAGATATACAAAAGAAAAGAGAGATTATCATTTGAGTTTGAAAAGTCA 2428
Query 2458 ATATGTTCTTGTCCGTGCTAGTTATTACCCTCTCACTCTAACTA----CT-CTC-C-AAC 2510
|||||||||||||| |||||||| |||||||||||||||||||| || ||| | |||
Sbjct 2429 ATATGTTCTTGTCCTTGCTAGTTGTTACCCTCTCACTCTAACTAGTAACTACTCTCCAAC 2488
Query 2511 TTGGGAATCCAGAGATATCAGCTTTTGGTG 2540
|||||||||||||||||||| |||||||||
Sbjct 2489 TTGGGAATCCAGAGATATCAACTTTTGGTG 2518
> Ahg486853 jgi|Araly1|486853|fgenesh2_kg.5__2845__AT3G63450.1
Length=1350
Score = 331 bits (179), Expect = 1e-89
Identities = 331/402 (82%), Gaps = 20/402 (5%)
Strand=Plus/Plus
Query 1179 AAAGGTGTTAACTTGCAGCAAAACGATGTTC-AAAG-AGCTGCTGCTGCTTTGATGATAG 1236
|||||||||||||||||||| | || | | |||| || ||||||||| ||||||| |
Sbjct 352 AAAGGTGTTAACTTGCAGCAGAGTGAAG-CCAAAAGCAG-AGCTGCTGCTCTGATGATGG 409
Query 1237 GAGATGAATTGCAGAAGCTT-GGAAGATGGAGACCTGAAAGGATTGATCTTTCTGCTATG 1295
| ||||| ||||| ||| || ||||||||||| || || ||||| || ||||| || |||
Sbjct 410 GCGATGACTTGCACAAG-TTGGGAAGATGGAGGCCAGAGAGGATCGACCTTTCCGCCATG 468
Query 1296 GCTTGTCCAGCTTCAAGACAGATCTATCTGACATTCCCTGCCGACAGTAGGTTCAGGGAG 1355
|| || || ||||| ||||||||||||||||| ||||| || ||||||| ||||||||
Sbjct 469 GCCTGCCCGGCTTCCAGACAGATCTATCTGACTTTCCCGGCTGACAGTATCTTCAGGGAA 528
Query 1356 GAAGATGTGTCC-A--A-TT-A-C----T--T-CAGTACTTTTGGACCAGTTCAAGATGT 1402
|||||||| ||| | | || | | | | |||||| ||||| |||||||| || ||
Sbjct 529 GAAGATGTTTCCGACTACTTCAGCATGGTGGTGCAGTAC-TTTGGGCCAGTTCAGGACGT 587
Query 1403 GAGGATACCATATCAGCAAAAGAGAATGTTTGGTTTTGTGACATTTGTGTACCCTGAGAC 1462
||||||||| || ||||| ||||| |||||||| || ||||| || ||||||| || ||
Sbjct 588 GAGGATACCGTACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGATAC 647
Query 1463 TGTTAAGAGCATTCTCGCCAAAGGGAATCCTCACTTTGTGTGTGATTCCAGAGTTCTTGT 1522
|| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 648 GGTGAAGAGCATTCTGGCCAAAGGGAACCCTCACTTTGTGTGTGATTCCAGGGTTCTTGT 707
Query 1523 CAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAATACAG 1564
||||||||||||||||||||||||||||| ||||| |||||
Sbjct 708 TAAGCCTTACAAGGAGAAAGGCAAAGTCCCAGACAAGTACAG 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95758875930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5