BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51960.2
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485555 jgi|Araly1|485555|fgenesh2_kg.5__1547__AT3G51960.2 1066 0.0
> Ahg485555 jgi|Araly1|485555|fgenesh2_kg.5__1547__AT3G51960.2
Length=766
Score = 1066 bits (577), Expect = 0.0
Identities = 662/703 (94%), Gaps = 6/703 (1%)
Strand=Plus/Plus
Query 199 GATGAATGAGGAAGAAGATAAAGATCAAGATCGAGTAACGAGAGGATGTAGTCACACTCA 258
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GATGGATGAGGAAGAAGGTAAAGATCAAGATCGAGTAACGAGAGGATGTAGTCACACTCA 128
Query 259 TAGCTGTAACCCTCCAGGCCCAGAGGATGCTTCTCACTCCCACACATGCTTCCACGCTCA 318
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 129 CAGCTGTAACCCTCCAGGCCCAGAGGATGCTTTTCACTCCCACACATGCTTCCACGCTCA 188
Query 319 CACTCATCTCATCATCTCTCAGGATCAGCAAGAGAATGATCATTCTGACAGTAGCAACAA 378
|||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 189 CACTCATCTCATTATC-C-C-TGATCAGCAAGAGAATGATCATTCTGACAGTAGCAACAA 245
Query 379 GAAACGGTTATGTGGTAATAGAGAGGCAGTGAGGAAGTACAGGGAGAAGAAGAAGGCTCG 438
|||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GAAAAGGTCATGCGGCAATAGAGAGGCAGTGAGGAAGTACAGGGAGAAGAAGAAGGCTCG 305
Query 439 CACTGCATACCTTGAAGATGAAGTGATGAGATTGCAATCTCTGAATGAGCAATTCCTTAG 498
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 306 CACTGCGTACCTTGAAGATGAAGTGAAGAGATTGCAATCTCTGAATGAGCAAATGCTTAG 365
Query 499 AAAACTTCAGAGCCAAGAAATGGTGGAAACTGAATTGATCAGACTCCGGGCTCTTCTGGT 558
||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 366 AAAGCTTCAGAGCCAAGAAATGATGGAAACTGAATTGATCAGACTCCGGACTCTTCTGGT 425
Query 559 AGAGATGCAGGGGAAAATTGAAGTTGAACTTTGTAGTTTCTCGTTTCAGAAACAATGCAA 618
||||||||||||||||||||| |||||||||||| | ||||| |||||||| ||||||||
Sbjct 426 AGAGATGCAGGGGAAAATTGATGTTGAACTTTGTGGCTTCTCCTTTCAGAAGCAATGCAA 485
Query 619 CGGTTCTGGTTTTGTGTTCAAAGAAGATGGATGCAACT-TAGCAACAAGTAATATGATGT 677
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 486 CGGTTCTGGTTTTGTGTTCAAAGAAGATGGATGC-AGTGTAGCAACAAGTAATATGATGT 544
Query 678 GTGAAGCGGCAAGAGTGGAGTGCGAGGAGGGCCAAACACTTCATGATCCTATTCAATCTT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 545 GTGAAGCGGCAAGAGTGGAGTGCGAGGAGGGCCAAACACTTCATGATCCTATTCACTCCT 604
Query 738 TTGTTCCTCAACCACCACCATTCTCACGTTAAGCGTTTACGGGCTGTGGTATTGTGTGTA 797
||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 605 TTGTTCCTCAATCACCACCATTCTCACATTAAGCTTTTACGGGCTGTGGTATTGTGTATA 664
Query 798 TATATATACATATGGGTTTAATTAGGGGCATAGAGGTCGGATTCCAATATAGTTAACATA 857
|||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 665 TATATATACATATGGGTTCAATTAAGGGCATAGAGGTTGGATTCCAATATAGTTAACTTA 724
Query 858 TACACAGATTGGTAACTTATTCTACATATGTCTATTTTAAGGG 900
||||||||||| |||||||||| || |||||||||||||||||
Sbjct 725 TACACAGATTG-TAACTTATTCCACGTATGTCTATTTTAAGGG 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5