BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51970.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485556 jgi|Araly1|485556|fgenesh2_kg.5__1548__AT3G51970.1 1622 0.0
> Ahg485556 jgi|Araly1|485556|fgenesh2_kg.5__1548__AT3G51970.1
Length=1194
Score = 1622 bits (878), Expect = 0.0
Identities = 1085/1185 (92%), Gaps = 13/1185 (1%)
Strand=Plus/Plus
Query 62 TTTGAGTTCAAGAAGCAAAAATGGCGAGTTTCATCAAGGCATGGGGTTTAGTGATCATCT 121
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 20 TTTGAATTCAAGAAGCAAAAATGGCAAGTTTCATTAAGGCATGGGGTTTAGTGATCATCT 79
Query 122 CACTGTGTTACACTTTTTTCATTGCCAAATTGGTTCCAAAAGGAATCAAAAGGCTCATAC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 80 CACTGTGTTACACTTTTTTCATTGCCAAATTGGTTCCAAAAGGAATCAAAAGGCTGATAC 139
Query 182 TATTTTTCCCTGTCTTCCTCATTTTCTTCATAGTACCTTTCTTGATATATTCCTTACATT 241
|| | ||||||||| |||| |||||||||||||| ||||||||||||| |||| |||||
Sbjct 140 TAATCTTCCCTGTCGTCCTTATTTTCTTCATAGTTCCTTTCTTGATATCTTCCATACATA 199
Query 242 TACTCGGCATCACGGCTTTCTTCATCGCTTGGCTAGCAAATTTCAAGCTC-TTATTATTT 300
||||||||||||||||||||||||| |||||||| || |||||||||||| || |||||
Sbjct 200 TACTCGGCATCACGGCTTTCTTCATTGCTTGGCTCGCGAATTTCAAGCTCGTT-CTATTT 258
Query 301 GCATTAGGGCGCGGTCCTCTCTCTTCAAACCATAAACCCCTATCTCTCCCTATTTTCTTA 360
|||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 259 GCATTAGGACGCGGTCCTCTCTCTTCAAACCCTAAACCTCTATCTCTCCCTATTTTCTTA 318
Query 361 GCTGTCTCTTGCTTGCCCATCAAGATTCAGCTGAGCCCAAAACCTACAAAAACTCACTCC 420
||||||||||||||||||||||||||||||| ||| || |||||| |||| ||||||||
Sbjct 319 GCTGTCTCTTGCTTGCCCATCAAGATTCAGCCGAGGCCTAAACCTCCAAATTCTCACTCC 378
Query 421 CATGAAGGATCCACAGAGGGTCCTTTGATTTATACCATAAAGGCAGT-TTTTGTGGTTC- 478
|||| ||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 379 CATGGAGGAT--TC----GGTCCTTTGATTTATACCATAAAGGCAGTGTTTT-TGGTTCT 431
Query 479 TCATCATCAAAGCCTACGAATACAGTACCAAATTGCCTGAGAAAGTCGTGCTGACTCTCT 538
|| ||||||||| ||||||||||| || |||| |||| |||||||||||| |||||||||
Sbjct 432 TC-TCATCAAAGTCTACGAATACAATAACAAACTGCCCGAGAAAGTCGTGTTGACTCTCT 490
Query 539 ACGCGATCCACATATATTTCGCCCTTGAGATCATCCTTGCCGCCACAGCTGCTGCGGTTC 598
||||||||||||||||| |||| || ||| ||||||| |||||||| ||||||| |||||
Sbjct 491 ACGCGATCCACATATATATCGCACTCGAGCTCATCCTAGCCGCCACGGCTGCTGTGGTTC 550
Query 599 GAGCCATGTCGGATCTTGAGCTCGAGCCACAGTTCAACAAGCCGTACCTAGCGACATCAC 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 551 GAGCCATGTCGGATCTTGAGCTCGAGCCACAGTTCAACAAGCCGTACCTCGCGACATCAC 610
Query 659 TTCAAGATTTCTGGGGGAGACGATGGAACCTGATGGTCACTGGAATCTTACGGCCAACCG 718
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 611 TTCAAGATTTCTGGGGGAGACGATGGAACCTGATGGTCACCGGAATCTTACGGCCAACCG 670
Query 719 TGTACGAACCGTCACTTCAACTGTTCTCGGTTTTGGGCCCGAACTATTCCCAGATTCTTG 778
| |||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||| ||
Sbjct 671 TATACGAACCGTTACTTCAACTGTTCTCGGTCTTGGGCCCGAACTTTTCCCAGTTTCCTG 730
Query 779 CAGCTTTCGGGACGTTTGTTGTCTCTGGGATAATGCACGAGCTCATCTTCTTCTACATGG 838
| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 731 CGGCTTTCGGGACGTTCGTTGTTTCTGGGATAATGCACGAGCTTATCTTCTTCTACATGG 790
Query 839 GACGGTTGAGGCCAGACTGGAAGATGATGTGGTTCTTCCTCATAAATGGATTTTGCACGA 898
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 GACAGTTGAGGCCGGACTGGAAGATGATGTGGTTCTTCCTCATAAATGGATTTTGCACGA 850
Query 899 CCGTGGAGATCGCCATCAAGAAAACCATTAACGGTAGGTGGAGATTCCCGAAAGCAATCA 958
||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||
Sbjct 851 CCGTGGAGATCGCCATCAAGAAAACAATTAACGGAAGGTGGAGAATCCCGAAAGTAATCA 910
Query 959 GTCAGGTTTTGACACTCACTTTTGTGATGGTGACGGCATTGTGGCTGTTCTTGCCCGAAT 1018
||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct 911 GTCGGGTTTTGACACTCGGGTTTGTGATGGTGACGGCATTGTGGTTGTTCTTGCCAGAAT 970
Query 1019 TTAATCGGTGCAACATAGTTGAGAAGGCTCTTGATGAGTACGCAGCCATAGGCGCATTTG 1078
|||| |||||||||||| |||||| |||||||||||| |||||||||||| || || |||
Sbjct 971 TTAACCGGTGCAACATAATTGAGAGGGCTCTTGATGAATACGCAGCCATAAGCACAGTTG 1030
Query 1079 CAGTCGAGGTCAGGAGGAAACTGACCGCATATCTTTTTTAACCCTGCCGTGTGACAAAGC 1138
||| |||| ||||||||| | | ||||||| |||||| ||||| | ||||||||||||||
Sbjct 1031 CAGCCGAGATCAGGAGGAGAGTAACCGCATCTCTTTTATAACCTTACCGTGTGACAAAGC 1090
Query 1139 TTGAGTGATCTCTATTTTAACTTAtttttttCTAACACTGTAAAACCGACATTTCTGCAA 1198
|||| ||| ||||||||| ||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 1091 TTGAATGAGCTCTATTTTGACTTATTTTTTTCCAACACTGTAAAACCGGCATTTTTGCAA 1150
Query 1199 CCCCATCATTTACATGGCACACGAATCAAGAAAATTGTGGAAGTT 1243
||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1151 CCC-ATCATTTACATGGAACACGAATCAAGAAAATTGTGGAAGTT 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5