BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51990.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938068 jgi|Araly1|938068|scaffold_502259.1 1845 0.0
> Ahg938068 jgi|Araly1|938068|scaffold_502259.1
Length=1126
Score = 1845 bits (999), Expect = 0.0
Identities = 1088/1131 (96%), Gaps = 5/1131 (0%)
Strand=Plus/Plus
Query 92 CTTCTTCTTCCCTCGATTCAATGGGTTATCTCTCCTGCAAAGCTGGATCCGCCGTCGCAA 151
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTCTCTCGATTCAATGGGTTATCTCTCCTGCAAAGCTGGATCCGCCGTCGCAA 60
Query 152 TCGCCGTTTCATCTGCCGCATCAACCTCCGGATCCACCTCCAGCAAAGCTTCTGCTCCTC 211
||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 61 TCGCCGTCTCATCTTCCGCATCGACCTCAGGATCCTCCTCCAGCAAAGCTTCTGCTCCTC 120
Query 212 CCGAATCTCCCATTGAAGACCGTCCTAGACTTCGTCGTTTCCTCCATCGCGATCTCGAAT 271
|||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |
Sbjct 121 CCGAGTCTCCCATTGAAGACCGCCCTAGACTTCGCCGTTTCCTGCATCGCGATCTTGACT 180
Query 272 CAGCCACAGGAGGTTTCGACATCAACAATCTCCTCGGACGTGGAAGCCATGGAAGCGTTT 331
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CAGCCACAGGAGGATTCGACATCAACAACCTCCTCGGACGTGGAAGCCATGGAAGCGTTT 240
Query 332 ACAAAGCTGTCATCGGTTCACGTCACATCGCGGTCAAGAGACCTTCGAAATCTCGAGAAA 391
||||||| |||||||||||||||| | | || ||||||||||||||||||||||| ||||
Sbjct 241 ACAAAGCGGTCATCGGTTCACGTCTCGTTGCCGTCAAGAGACCTTCGAAATCTCGTGAAA 300
Query 392 TCAGCCGTGAGTTCCACAACGAATTCGAGATTCTCTCCAGAATCCGTAGCCCTAGGTTTG 451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TCAGCCGTGAGTTCCACAACGAATTCGAGATTCTCTCCAGAATCCGTAGCCCTAGGTTCG 360
Query 452 TGAATCTCTTAGGTTTTAGCGCCGATAACTCCAAAGAACCACTTCTCGTTGTTGAATTCA 511
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TGAATCTCTTAGGTTTTAGCGCCGATAACTCCAAAGAACCTCTTCTCGTTGTTGAATTCA 420
Query 512 TGGGAAACGGAAGCTTATACGACGTGATTCACTCAGATACCGTTTTAAACTCCGGTGCGA 571
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 421 TGGGAAACGGAAGCTTATACGACGTGATTCACTCAGATTCCGTTTTAAATTCCGGTGCGA 480
Query 572 TTTCGAGCTGGAGTAAGAGAATCAAAATCGCTCTTCAGATTGCAAAAGCCGTACATCTTC 631
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTCGAGCTGGAGCAAGCGAATCAAAATCGCTCTTCAGATTGCAAAAGCCGTACATCTTC 540
Query 632 TACATTCTCAAGAGACACCGATCATACACAGAGATATAAAATCAGCAAACGTATTGATGG 691
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TACATTCACAGGAGACACCGATCATACACAGAGATATCAAATCAGCAAACGTATTGATGG 600
Query 692 ATAAGAATCTAAACGCGAAGCTAGGCGATTTCGGATTAGCGATCAGATGCAATGTTGATG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 ATAAGAATCTAAACGCGAAGCTAGGCGATTTCGGATTAGCGATCAGATGCAATGTAGATG 660
Query 752 ATCAAAAAGTGAAATCAACACCACCTGCAGGAACAATGGGTTACTTAGATCCAGATTACG 811
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 ATCAAAAAGTGAAATCAACACCACCTGCAGGAACAATGGGGTACTTAGATCCAGATTACG 720
Query 812 TAACGGCTGATAGATTAAGCACGAAAACTGATGTGTTTAGCTTCGGGATCTTGTTGTTAG 871
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 721 TAACGGCTGATAGATTAAGCACCAAAACAGATGTGTTCAGCTTCGGGATCTTGTTGTTAG 780
Query 872 AGATAATCAGCGGAAGAAAAGCAATCGACGTTAGATATTCGCCGTCGTTTATAGTAGATT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGATAATCAGCGGAAGAAAAGCAATCGACGTTAGATATTCGCCGTCGTTTATAGTAGATT 840
Query 932 GGGCGATTCCGATGATAAAAAGAGGCAAAATCGGTGGGATTTATGATCCGAGAATCGGAC 991
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 GGGCGATTCCGATGATAAAAAGAGGCAAAATCGGTGGAATTTATGATCCGAGAATCGGAC 900
Query 992 CACCGATTGATGTAAGTGTGAGGAATCATTTGGGGTTAGTGGCGGCTAAGTGTGTGAGAA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CACCGATTGATGTAAGTGTGAGGAATCATTTGGGGTTAGTGGCGGCTAAGTGTGTGAGAA 960
Query 1052 CGTGTAGAGAGAAACGGCCGGGGATGGAGGAAGTGGTTGGGTGGCTCACGGGGTTGACTA 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGTGTAGAGAGAAACGGCCGGGGATGGAGGAAGTGGTTGGGTGGCTCACGGGGTTGACTA 1020
Query 1112 AGTCGGTTAGGTCACGACGGTGGGATGAGTTAAGCATTGGAAACCCGTGTATGATGGTCG 1171
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1021 AGTCTGTTAGGTCACGACGGTGGGATGATTTAAGCATTGGAAACCCGTGTATGATGGTCG 1080
Query 1172 AGACGGTGGGTGGTCGACCCGTGGAATGATTTTTTATTTGTTTAAAATCAA 1222
||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1081 AGACGGTGGGT---CGACCCGTGGAATGATTTTTT-TTC-TTTAAAATCAA 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5