BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52000.1
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323748 jgi|Araly1|323748|fgenesh1_pm.C_scaffold_5001292 2102 0.0
Ahg348300 jgi|Araly1|348300|fgenesh1_pg.C_scaffold_5001692 1526 0.0
Ahg485559 jgi|Araly1|485559|fgenesh2_kg.5__1551__AT2G05850.1 765 0.0
Ahg938069 jgi|Araly1|938069|scaffold_502260.1 307 1e-82
> Ahg323748 jgi|Araly1|323748|fgenesh1_pm.C_scaffold_5001292
Length=1446
Score = 2102 bits (1138), Expect = 0.0
Identities = 1352/1455 (93%), Gaps = 15/1455 (1%)
Strand=Plus/Plus
Query 62 ATGGGAAAACGACAAGATTGGTCTGTGACTGCTTGTATTTTCCTGTTCTTGTCTTTGGCA 121
|||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATGGGACAACGACAAGATTGGTCCGTGACTGCTTGTGTTTTCCTATTCTTGTCTTTGGCA 60
Query 122 TCACAAATCCATTGTAGGAGCCACATACCTTTTCCAAGCCCTAAGCGAGGGGTTAGTTCG 181
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||
Sbjct 61 TCACAAATCCATTGTAGGAGCCAAATACTTTTTCCAAGCCATAAGCGAGGGGTTGGTTCG 120
Query 182 TCAGGTGACACGAGCCACTTCAATGTGATTCAACGCGAAAGTGTGCCTTCGCCAAAGGAC 241
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 121 TCAGGCGACACGAGCCACTTCAATGTGATTCGTCGTGAAAGTGTGCCTTCGCCAAAGGAG 180
Query 242 AAAGATCTAATTC-AGCAGCTCCCCGGACAACCTTCTGACGTTACTTTCAAACAGTACGG 300
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 181 AAAGATCTAA-TCAAGCAGCTCCCCGGACAACCTTCCGACGTTACTTTCAAACAGTATGG 239
Query 301 TGGTTATGTGGCCGTAAACAAACCAGCCGGTCGGTTTTTGTACTATTATTTCGTTGAAAC 360
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |
Sbjct 240 CGGTTATGTGGCCGTAAACGAACCAGCCGGTAGGTTTTTGTACTATTATTTCGTGGAAGC 299
Query 361 CATCAAACCCGGTAACA-CTACTCCTCTTGTGATCTGGTTCAACGGAGGACCGGGCTGCT 419
|||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CATCAAACCCAGTAA-ATCTACTCCTCTTGTGATCTGGTTCAACGGAGGACCGGCCTGCT 358
Query 420 CATCTCTAGGTGGGGCATTTAAAGAGCTTGGTCCATTCCGCGTACATAGCGACGGCAAAA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 CATCTCTAGGTGGGGCATTTAAAGAGCTTGGTCCATTCCGCGTACATAGCGATGGCAAAA 418
Query 480 CTCTTTTCCGCAATCCTTATTCATGGAACAACGAGGCGAACGTGTTGTTCTTAGAAACGC 539
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGCTGTTCCGCAATCCTTATTCATGGAACAACGAGGCGAACGTGTTGTTCTTAGAAACGC 478
Query 540 CGGTAGGGACAGGGTTCTCATACTCAAACT-CTCCAATAAATGGGAAACAAGGAGACAAG 598
||||||||||||| ||||| ||||| || | ||||||| ||||||||||||| ||||||
Sbjct 479 CGGTAGGGACAGGATTCTCGTACTCGAA-TAGTCCAATATATGGGAAACAAGGGGACAAG 537
Query 599 GCAACAGCAGAGGATAACTACATGTTCTTGGTGAATTGGCTTGAAAGGTTTCCGGAATAT 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCAACAGCAGAGGATAACTACATGTTCTTGGTGAATTGGCTTGAAAGGTTTCCGGAATAT 597
Query 659 AAAGGAAGAGACATTTACATCGCCGGTCAGAGTTACGCTGGCCACTATGTTCCCCAACTT 718
||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 598 AAAGGAAGAGAAATTTACATTACCGGTCAGAGTTACGCCGGCCACTATGTTCCCCAACTT 657
Query 719 GCCCAAATCATCCTTCACCGTAACAACCAGACCTTAATCAACCTGCGTGGCATTTTGATT 778
||||| || ||| ||||||||||||| || || || |||||||| || ||||||||||||
Sbjct 658 GCCCAGATTATCATTCACCGTAACAAGCAAACTTTCATCAACCTACGAGGCATTTTGATT 717
Query 779 GGTAATCCATCACTTAACAGGGAGATCCAGGATGATTTCGGCTACAAATTTATGTTTAGT 838
||||| ||||||||||||||||||||||| || || |||||| |||||||||||||||||
Sbjct 718 GGTAACCCATCACTTAACAGGGAGATCCAAGAAGAATTCGGCAACAAATTTATGTTTAGT 777
Query 839 CATGGTTTGATATCCCAACAGCAAATGGACAATTATAATAAATTCTGCACGGACTCCGAC 898
|||||||||||||||||||| ||||||||||||||||| |||||||| || || ||||
Sbjct 778 CATGGTTTGATATCCCAACAACAAATGGACAATTATAACAAATTCTGTAC---CTACGAC 834
Query 899 TTATATGATTGGGACAAGTGCCATTTGGCGTCCCAAAAAATAGAAGCTCAAAAAACACAC 958
||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||| |
Sbjct 835 TTATATGATTGGGACAAGTGCAAATTGGCGTCCCAAAAGATAGAAGATCAAAAAACACGC 894
Query 959 TTGGACATTTACAACATATACGCTCCATTGTGCCTAAACTCCACATTGAGCAGCGAACCC 1018
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 895 TTGGACATTTACAACATATACGCTCCAGTGTGCCTAAACTCCACATTGAGCAGCGAACCC 954
Query 1019 AAGAAATGCACCACAATAATGAAGGCTGATCCGTGCAGTGGGAACTATTTGAAGGCGTAT 1078
||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||
Sbjct 955 AAGAACTGCACCACAATAATGGAGGTTGATCCGTGCAGTGGCAACTATTTGAAGGCTTAT 1014
Query 1079 CTTAACATAAAAGAGGTTCAAGAAGCGATACATGCCAACACCACGAAAATACCGTATGAG 1138
||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1015 CTTAACACGAAAGAGGTTCAAGAAGCAATACATGCCAACACCACGAAATTACCGTATGAG 1074
Query 1139 TGGACCTCTTGCAATACGAAACTACTTTGGGAATGGAACGAAAAA-GATAGGTATGTCTC 1197
|||||||||||||||| |||||| ||||||||||||| ||||| |||| ||||||||
Sbjct 1075 TGGACCTCTTGCAATAAGAAACTGGGTTGGGAATGGAAC-AAAAATGATAAATATGTCTC 1133
Query 1198 ATTGACACCTATCCTTCAGGAGCTGATGGG-GAAGGGTGTCCGAGTCATGCTGTACAATG 1256
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1134 ATTGACACCTATCCTTCAAGAGCTGATGGGTGA-GGGTGTCCGAGTCATGCTGTACAATG 1192
Query 1257 GAGACGTGGACCTGGTGATTCCATTTACATCTACATTGGCCGTGGTGAAGACGATGAATC 1316
||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||
Sbjct 1193 GAGACGTGGACCTGGTGATTCCATTTACATCGGTAGTGGCCGTGCTGAAGTCGATGAATC 1252
Query 1317 TGACGGTTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACATG-TGGGAGGGTTCACA 1375
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1253 TGACGGTTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACA-GCTGGGAGGGTTCACA 1311
Query 1376 GAGGATTACAAAGGGAACTTAACCTTTGTAACTGTGAAAGGAGCAGGTCATAGTGTTCCT 1435
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1312 GAGGATTACAAAGGGAACTTAACCTTTGTAACTGTGAAAGGATCAGGTCATAGTGTTCCT 1371
Query 1436 ACGGACCAACCTATACATGCTCTTAATATCTTTACAAGCTTTATCCGTAACACTCCACTC 1495
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 1372 ACGGACCAACCTATACATGCTCTTAATATTTTTACCAGCTTTATCCGTAATACTCCTCTC 1431
Query 1496 CCTCAAACAGCCTGA 1510
||||||||| |||||
Sbjct 1432 CCTCAAACACCCTGA 1446
> Ahg348300 jgi|Araly1|348300|fgenesh1_pg.C_scaffold_5001692
Length=1464
Score = 1526 bits (826), Expect = 0.0
Identities = 1283/1493 (86%), Gaps = 73/1493 (5%)
Strand=Plus/Plus
Query 62 ATGGGAAAACGACAAGATTGGTCTGTGACTGCTTGTATTTTCCTGTTCTTGTCTTTGGCA 121
||||||||||||||||||||||| |||| |||||| |||| || |||||||||||||||
Sbjct 1 ATGGGAAAACGACAAGATTGGTCCCTGACCGCTTGTGTTTTTCTATTCTTGTCTTTGGCA 60
Query 122 TCACAAATCCATTGTAGGAGCCACATACCTTTTCCAAGCC--------C--T--AAGCGA 169
||||||||||||||||||||||| | || |||| ||| || | | |||| |
Sbjct 61 TCACAAATCCATTGTAGGAGCCAAACACATTTTTCAAACCGTTTGGAGCGGTCGAAGCAA 120
Query 170 GGGGTTAGTTCGTCAGGTGACACGAGCCACTTCAATGTGATTCAACGCGAAAGTGTGCCT 229
|| | | ||||||||||||| ||||| |||||||||| || || |||||| |
Sbjct 121 GGAGATGGTTCGTCAGGTGATACGAG---CTTCAATGTGCTT-----CG-TCGTGTGCTT 171
Query 230 TCGCCAAAGGACAAAGATCTAATTC-AGCAGCTCCCCGGACAACCTTCTGACGTTACTTT 288
||||||||||| |||||||||| || || ||||||||||||||||||| | ||||| |||
Sbjct 172 TCGCCAAAGGAGAAAGATCTAA-TCAAGAAGCTCCCCGGACAACCTTCCGGCGTTAGTTT 230
Query 289 CAAACAGTACGGTGGTTATGTGGCCGTAAAC-AAACCAGCCGGTCGGTTTTTGTACTATT 347
|| |||||| || ||||||||||| |||||| ||| || ||||| |||||||||||||||
Sbjct 231 CAGACAGTATGGCGGTTATGTGGCTGTAAACGAAA-CAACCGGTAGGTTTTTGTACTATT 289
Query 348 ATTTCGTTGAAACCATCAAACCCGGTAACA-CTACTCCTCTTGTGATCTGGTTCAACGGA 406
||||||| ||| ||||||| ||| ||| | | |||||||||||||||||||||||||||
Sbjct 290 ATTTCGTGGAAGCCATCAACCCCAATAA-ATCCACTCCTCTTGTGATCTGGTTCAACGGA 348
Query 407 GGACCGGGCTGCTCATCTCTAGGTGGGGCATTTAAAGAGCTTGGTCCATTCCGCGTACAT 466
||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 349 GGACCGGCCTGCTCATCTCTAGGTGGGGCATTTCTAGAGCTTGGTCCATTCCGTGTACAT 408
Query 467 AGCGACGGCAAAACTCTTTTCCGCAATCCTTATTCATGGAACAACGAGGCGAACGTGTTG 526
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 409 AGCGACGGCAAAACGCTTTTCCGCAATCCTTATTCATGGAACAACGAGGCAAACGTGTTG 468
Query 527 TTCTTAGAAACGCCGGTAGGGACAGGGTTCTCATACTC-AA-ACT-C--TCCA-AT--A- 577
||||||||| |||||||| |||||| ||||| ||||| || ||| | | | | |
Sbjct 469 TTCTTAGAATCGCCGGTAACGACAGGATTCTCGTACTCGAATACTCCAATTGATTTGGAG 528
Query 578 -AA-T-GGGAAACAAGGAGACAAGGCAACAGCAGAGGATAACTACATGTTCTTGGTGAAT 634
|| | ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 529 GAATTCGGGAACCAAGGGGACAAGGTAACAGCAGAGGATAACTACATGTTCTTGGTGAAT 588
Query 635 TGGCTTGAAAGGTTTCCGGAATATAAAGGAAGAGACATTTACATCGCCGGTCAGAGTTAC 694
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 589 TGGCTTGAAAGATTTCCGGAATATAAAGGAAGAGAGATTTACATAGCCGGTCAGAGTTAC 648
Query 695 GCTGGCCACTATGTTCCCCAACTTGCCCAAATCATCCTTCACCGTAACAACCAGACCTTA 754
|| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 649 GCCGGCCACTATGTTCCCCAACTTGCCCAGATCATCCTTCACCGTAACAAGCAAACCTTC 708
Query 755 ATCAACCTGCGTGGCATTTTGATTGGTAATCCATCACTTAACAGGGA--GATCCAGGA-T 811
|||||||| | ||||||||||| ||||||||||||| | | | | |||||||||
Sbjct 709 ATCAACCTACAAGGCATTTTGATCGGTAATCCATCAC-TCGC-CGCACTGATCCAGGAGC 766
Query 812 GATTTCGGCTACAAATTTATGTTTAGTCATGGTTTGATATCCCAACAGCAAATGGACAAT 871
|| ||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 767 GA-TTCACCTACAAATTTATGTTAAGTCATGGTTTGATGTCCCAACAACAAATGGACAAT 825
Query 872 TATAATAAATTCTGCACGGA-CTCCGACTTATATGATTGGGACAAGTGC-CATTTGGC-G 928
||||| |||||||||| || | |||||||||||| ||||||||| || || || |
Sbjct 826 TATAACAAATTCTGCA-TGAGCGAGGACTTATATGATAATGACAAGTGCACA-TT-GCTG 882
Query 929 TCCCAAAAAATAGAAGCT-CA-AAAAACACACTTGGACATTTACAACATATACGCTCCAT 986
| |||||| | | || | |||||| |||||||||| |||||||||||||||||| |
Sbjct 883 ACACAAAAATTCG--TCTATACAAAAACGCACTTGGACACTTACAACATATACGCTCC-T 939
Query 987 -TGTGCCTAAACTCCACATTGAGCAGCGAACCCAAGAAATGCACCACAATAATGAAGGCT 1045
|||||||||||||||| ||||| ||| || ||||||||||||||||| ||||| ||| |
Sbjct 940 GTGTGCCTAAACTCCACGTTGAGAAGCAAATCCAAGAAATGCACCACAGTAATGGAGGTT 999
Query 1046 GATCCGTGCAGTGG-GAACTATTTGAAGGCGTATCTTAACATAAAAGAGGTTCAAGAAGC 1104
|||||||||||||| | |||| ||||||| |||||||||| |||| |||||||| ||||
Sbjct 1000 GATCCGTGCAGTGGCG-ACTACATGAAGGCTTATCTTAACAGAAAAAAGGTTCAAAAAGC 1058
Query 1105 GATACATGCCAACACCACGAAAA-TACCGTATGAGTGGACCTCTTGCAAT-ACGAAACTA 1162
|||||||||||||||||| |||| ||||||| ||||||||||||||| || ||| | |
Sbjct 1059 GATACATGCCAACACCAC-AAAATTACCGTACGAGTGGACCTCTTGCCATGACG-CA-TT 1115
Query 1163 CTTTG-GGAATGGAACGA-AAAAGAT-AGGTATGTCTCATTGACACCTATCCTTCAGGAG 1219
|| || ||||| | | | | | | | |||||||| |||||||||||||||| |||
Sbjct 1116 GAGTGAGGTATGGAGC-ACTGATGTTAAAG-ATGTCTCAATGACACCTATCCTTCACGAG 1173
Query 1220 CTGATGGG-GAAGGGTGTCCGAGTCATGCTGTACAATGGAGACGTGGACCTGGTGATTCC 1278
|| ||||| | ||||||| ||||||||| | ||||||||||||||||||||| ||||||
Sbjct 1174 CTTATGGGTG-AGGGTGTTCGAGTCATGATCCACAATGGAGACGTGGACCTGGAGATTCC 1232
Query 1279 ATTTACATCTACATTGGCCGTGGTGAAGACGATGAATCTGACGGTTGTAAAGGAATGGCG 1338
|||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1233 ATTTCCATCTACAGTGGCCGTGCTGAAGACAATGAATCTGACGGTTGTAAAGGAATGGCG 1292
Query 1339 TCCGTGGTTTACCGGAGGACATG-TGGGAGGGTTCACAGAGGATTACAAAGGGAACTTAA 1397
||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 1293 TCCGTGGTTTACCGGAGGACA-GCTGGGAGGGTTCGCAGAGGATTACAAAGGGAACTTAA 1351
Query 1398 CCTTTGTAACTGTGAAAGGAGCAGGTCATAGTGTTCCTACGGACCAACCTATACATGCTC 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 CCTTTGTAACTGTGAAAGGAGCAGGTCATAGTGTTCCTACGGACCAACCTATACATGCTC 1411
Query 1458 TTAATATCTTTACAAGCTTTATCCGTAACACTCCACTCCCTCAAACAGCCTGA 1510
||||||| ||||| |||||||||||||| ||||| |||||||||||| |||||
Sbjct 1412 TTAATATTTTTACCAGCTTTATCCGTAATACTCCTCTCCCTCAAACACCCTGA 1464
> Ahg485559 jgi|Araly1|485559|fgenesh2_kg.5__1551__AT2G05850.1
Length=1508
Score = 765 bits (414), Expect = 0.0
Identities = 644/751 (86%), Gaps = 32/751 (4%)
Strand=Plus/Plus
Query 59 AGAATGGGAAAACGACAAGATTGGTCTGTGACTGCTTGTATTTTCCTGTTCTTGTCTTTG 118
||||||||||||||||| |||||||| |||| |||||||||||||| || |||||| |
Sbjct 1 AGAATGGGAAAACGACATGATTGGTCCCTGACCGCTTGTATTTTCCTATTATTGTCTCTA 60
Query 119 GCATCACAAATCCATTGTAGGAGCCACATACCTTTTCCAAGCCCTAAGCGAGGGGTTAG- 177
|||| ||||||||||||||| ||||| |||| ||||||||| | ||||||||| ||| |
Sbjct 61 GCATTACAAATCCATTGTAGTAGCCAAATACGTTTTCCAAGTCATAAGCGAGGAGTTGGA 120
Query 178 TTCGTCAGGTGACACGAGCCACTTCAA-TGTGATTCAACGCGAAAGTGTGCCTTCGCCAA 236
|| |||||||||||| ||||||||||| | | |||| ||||||| ||||| ||||| |
Sbjct 121 TT-GTCAGGTGACACAAGCCACTTCAATTCT-ATTCGTCGCGAAAATGTGCTTTCGCTTA 178
Query 237 AGGACAAAGATCTAATTC-AGCAGCTCCCCGGACAACCTTCTGACGTTACTTTCAAACAG 295
|||| |||||||||| || |||||||||||||||||||||| ||||| ||||| |||
Sbjct 179 AGGAGAAAGATCTAA-TCAAGCAGCTCCCCGGACAACCTTC---CGTTAGTTTCAGACAA 234
Query 296 TACGGTGGTTATGTGGCCGTAAACAAACCAGCCGGTCGGTTTTTGTACTATTATTTCGTT 355
|| || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 235 TATGGCGGTTATGTGGCCGTAAACGAACCCGCCAGTCGGTTTTTGTACTATTATTTCGTG 294
Query 356 GAAACCATCAAACCCGGTAACA-CTACTCCTCTTGTGATCTGGTTCAACGGAGGACCGGG 414
||| ||||||||||| ||| | |||||||||||||| | ||||||||||||||||| |
Sbjct 295 GAAGCCATCAAACCCAATAA-ATCTACTCCTCTTGTGCTTTGGTTCAACGGAGGACCTGC 353
Query 415 CTGCTCATCTCTAGG---TGGGGCATTTAAAGAGCTTGGTCCATTCCGCGTACATAGCGA 471
|||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 354 CTGCTCATCTGTAGGACTTGGGGCATTTGAAGAGCTTGGTCCATTCCGCGTACATAGCGA 413
Query 472 CGGCAAAACTCTTTTCCGCAATCCTTATTCATGGAACAACGAGGCGAACGTGTTGTTCTT 531
||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 414 CGGCAAAACGCTTTTCCGCAATCCGTATTCATGGAACAACGAGGCGAACATGTTGTTCTT 473
Query 532 AGAAACGCCGGTAGG-GACAGGGTTCTCATACTCAAACT-CTCCA----AT----A-AA- 579
||| ||||||| | ||| ||||| ||||| | | ||||| || | ||
Sbjct 474 CGAAGGGCCGGTAACTGT-AGGATTCTCGTACTCGAG-TACTCCATTTGATGCGGAGAAA 531
Query 580 T--GGGAAACAAGGAGACAAGGCA-ACAGCAGAGGATAACTACATGTTCTTGGTGAATTG 636
| ||| ||||||| |||||| | || ||||||||||||||||||||||| ||||||||
Sbjct 532 TTTGGGGAACAAGGGGACAAG-CTGACTGCAGAGGATAACTACATGTTCTTTGTGAATTG 590
Query 637 GCTTGAAAGGTTTCCGGAATATAAAGGAAGAGACATTTACATCGCCGGTCAGAGTTACGC 696
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 591 GCTTGAAAGGTTTCCGGAATATAAAGGAAGAGAAATTTACATCGCCGGTGAGAGTTACGC 650
Query 697 TGGCCACTATGTTCCCCAACTTGCCCAAATCATCCTTCACCGTAACAACCAGACCTTAAT 756
|| |||||| ||||| |||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 651 CGGTCACTATATTCCCGAACTTGCCCAGATCATCCTTCACCGTAACAAGCAAACCTTCAT 710
Query 757 CAACCTGCGTGGCATTTTGATTGGTAATCCA 787
||| || | |||||||||||||||||||||
Sbjct 711 CAATCTACAAGGCATTTTGATTGGTAATCCA 741
Score = 645 bits (349), Expect = 0.0
Identities = 495/563 (88%), Gaps = 20/563 (4%)
Strand=Plus/Plus
Query 958 CTTGGACATTTACAACATATACGCTCCAT-TGTGCCTAAACTCCACATTGAGCAGCGAAC 1016
||||||||||||||||||||||||| | | |||||| ||||||||| |||||||||||||
Sbjct 915 CTTGGACATTTACAACATATACGCT-CTTGTGTGCCAAAACTCCACGTTGAGCAGCGAAC 973
Query 1017 CCAAGAAATGCACCACAATAATGAAGGCTGATCCGTGCAGTGGGAACTATTTGAAGGCGT 1076
||||||||||||||||||||||| ||| |||||||||||| | ||||| ||||||| |
Sbjct 974 CCAAGAAATGCACCACAATAATGGAGGTTGATCCGTGCAGAAGCAACTACGTGAAGGCTT 1033
Query 1077 ATCTTAACATA-AAAGAGGTTCAAGAAGCGATACATGCCAACACCACGAAAA-TACCGTA 1134
||||||||| | ||| | |||||||||||||| |||||||||||||| |||| |||||||
Sbjct 1034 ATCTTAACAGAGAAA-ATGTTCAAGAAGCGATGCATGCCAACACCAC-AAAATTACCGTA 1091
Query 1135 TGAGTGGACCTCTTGCAATACGAA-AC-T-ACTTTGGGAATGGAACGAAAAAGAT-AGGT 1190
||||||| ||||||||| ||| || | | || ||||||||||| ||| | |
Sbjct 1092 CGAGTGGAAGTCTTGCAAT--GAAGACTTGA-ATTATTTATGGAACGAAACTGATAAAG- 1147
Query 1191 ATGTCTCATTGACACCTATCCTTCAGGAGCTGATGGGGAAGGGTGTCCGAGTCATGCTGT 1250
||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||| | |
Sbjct 1148 ATGCCTCAATGATTCCTATCCTTCACGAGCTGATGGGTAAGGGTGTCCGAGTCATGATCT 1207
Query 1251 ACAATGGAGACGTGGACCTGGTGATTCCATTTACATCTACATTGGCCGTGGTGAA-GACG 1309
||| ||||||||||||||||| | |||| |||||| ||||| |||||||| |||| || |
Sbjct 1208 ACAGTGGAGACGTGGACCTGGCGGTTCCGTTTACAGCTACAGTGGCCGTGCTGAAGGA-G 1266
Query 1310 ATGAATCTGACGGTTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACATG-TGGGAGG 1368
|||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1267 ATGAATCTAACGGTTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACA-GCTGGGAGG 1325
Query 1369 GTTCACAGAGGATTACAAAGGGAACTTAACCTTTGTAACTGTGAAAGGAGCAGGTCATAG 1428
||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct 1326 GTTCACAGAGGATTACAAAGGGAACTTGACGTATGCAACTGTGAAAGGAGCAGGTCATA- 1384
Query 1429 T-GTTCCTACGGACCAACCTATACATGCTCTTAATATCTTTACAAGCTTTATCCGTAACA 1487
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1385 TGGTTCCTACGGACCAACCTATACATGCTCTTAATATCTTTACCAGCTTTATCCGTAACA 1444
Query 1488 CTCCACTCCCTCAAACAGCCTGA 1510
|||| |||||||||||| |||||
Sbjct 1445 CTCCTCTCCCTCAAACACCCTGA 1467
> Ahg938069 jgi|Araly1|938069|scaffold_502260.1
Length=335
Score = 307 bits (166), Expect = 1e-82
Identities = 273/322 (85%), Gaps = 17/322 (5%)
Strand=Plus/Plus
Query 1195 CTCATTGACACCTATCCTTCAGGAGCTGATG-GGGAAGGGTGTCCGAGTCAT-GCTGTAC 1252
|||| ||| |||||||| || ||||||||| | | |||||||||||||| | | |||||
Sbjct 18 CTCAATGATTCCTATCCTCCACGAGCTGATGAGTG-AGGGTGTCCGAGTC-TGGGTGTAC 75
Query 1253 AATGGAGACGTGGACCTGGTGA-TTCCATTTACATCTACATTGGCCGTGGTGAAGACGAT 1311
|||||||| ||||||||| | |||||||| |||||||| ||| |||| |||||| |||
Sbjct 76 AATGGAGATTTGGACCTGG-CAGTTCCATTTTCATCTACAATGGACGTGCTGAAGAAGAT 134
Query 1312 GAATCTGACGGTTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACATG-TGGGAGGGT 1370
|||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 135 GAATCTAACGATTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACA-GCTGGGAGGGT 193
Query 1371 TCACAGAGGATTACAAAGGGAACTTAACCTTTGTAACTGTGAAAGGAGCAGGTCAT-AGT 1429
||||| | |||||| ||||||| || || | || |||||||||||||||||||||| | |
Sbjct 194 TCACACAAGATTACCAAGGGAATTTTACGTATGCAACTGTGAAAGGAGCAGGTCATGA-T 252
Query 1430 GTTCCTACGGACCAACCTATACATGCTCTTAATATCTTTA--C---A--AGCTTTATCCG 1482
|| |||| ||||||||||||||||||||||||| |||||| | | |||||| | ||
Sbjct 253 GTGCCTAAGGACCAACCTATACATGCTCTTAATCTCTTTAGTCTTTACCAGCTTTCTTCG 312
Query 1483 TAACACTCCACTCCCTCAAACA 1504
||||||||| || |||||||||
Sbjct 313 TAACACTCCTCTACCTCAAACA 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525923580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5