BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52010.1
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348300 jgi|Araly1|348300|fgenesh1_pg.C_scaffold_5001692 1884 0.0
Ahg323748 jgi|Araly1|323748|fgenesh1_pm.C_scaffold_5001292 1496 0.0
Ahg485559 jgi|Araly1|485559|fgenesh2_kg.5__1551__AT2G05850.1 1330 0.0
> Ahg348300 jgi|Araly1|348300|fgenesh1_pg.C_scaffold_5001692
Length=1464
Score = 1884 bits (1020), Expect = 0.0
Identities = 1328/1476 (90%), Gaps = 24/1476 (2%)
Strand=Plus/Plus
Query 1 ATGGTAAAACAACAAGATTGGTCCGTGACTACTTGTGTTTTGCTATTCTTGTTTTTGGCA 60
|||| ||||| ||||||||||||| |||| |||||||||| |||||||||| |||||||
Sbjct 1 ATGGGAAAACGACAAGATTGGTCCCTGACCGCTTGTGTTTTTCTATTCTTGTCTTTGGCA 60
Query 61 TCACAAATCCATTGTAGGAGCGGAATACATGTTTCAAAACGTTTGGAGGGGTCAAAGCAA 120
||||||||||||||||||||| || |||| ||||||| ||||||||| |||| ||||||
Sbjct 61 TCACAAATCCATTGTAGGAGCCAAACACATTTTTCAAACCGTTTGGAGCGGTCGAAGCAA 120
Query 121 GGAGATGGTAAGTCAGGTGATACGAGCTTCAATGTGCTTCGTCGCGTGCTTTCGCCAAAG 180
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GGAGATGGTTCGTCAGGTGATACGAGCTTCAATGTGCTTCGTCGTGTGCTTTCGCCAAAG 180
Query 181 GAGAAAGATCTAATCAAGAAGCTCCCCGGACAACCTTCCGGCGTTAGTTTTAGACAGTAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GAGAAAGATCTAATCAAGAAGCTCCCCGGACAACCTTCCGGCGTTAGTTTCAGACAGTAT 240
Query 241 GGCGGTTATGTGCCCGTAAACGAACCATCCAGTCGGTTTTTGTACTATTATTTTGTGGAA 300
|||||||||||| | ||||||||| || || || ||||||||||||||||||| ||||||
Sbjct 241 GGCGGTTATGTGGCTGTAAACGAAACAACCGGTAGGTTTTTGTACTATTATTTCGTGGAA 300
Query 301 GCCATCAAACCCAATACATCTACTCCTCTGGTCATCTGGTTCAACGGAGGACCGGCCTGC 360
|||||||| ||||||| ||| |||||||| || |||||||||||||||||||||||||||
Sbjct 301 GCCATCAACCCCAATAAATCCACTCCTCTTGTGATCTGGTTCAACGGAGGACCGGCCTGC 360
Query 361 TCATCTCTAGGTGGGGCATTTCTAGAGCTTGGTCCCTTCCGCGTACATAGCGGCGGCAGA 420
||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |
Sbjct 361 TCATCTCTAGGTGGGGCATTTCTAGAGCTTGGTCCATTCCGTGTACATAGCGACGGCA-A 419
Query 421 AA-ACTTTTCCGCAATCCTTATTCATGGAACAACGAGGCGAACGTGTTGTTCTTAGAATC 479
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 AACGCTTTTCCGCAATCCTTATTCATGGAACAACGAGGCAAACGTGTTGTTCTTAGAATC 479
Query 480 GCCTGTAACGACAGGTTTCTCGTACTCGAGTAATCCAATTGATTTGGAGGAATTGGGGGA 539
||| ||||||||||| ||||||||||||| || ||||||||||||||||||||| ||| |
Sbjct 480 GCCGGTAACGACAGGATTCTCGTACTCGAATACTCCAATTGATTTGGAGGAATTCGGGAA 539
Query 540 GAAAGGGGACAAGGCAACAGCAGAGGATAACTACATTTTCTTGATGAATTGGCTAGAAAG 599
|||||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 540 CCAAGGGGACAAGGTAACAGCAGAGGATAACTACATGTTCTTGGTGAATTGGCTTGAAAG 599
Query 600 GTTTCCCGAATATAAAGGAAGAGACATTTACATCGCCGGTCAGAGTTACGCTGGCCACTA 659
||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 600 ATTTCCGGAATATAAAGGAAGAGAGATTTACATAGCCGGTCAGAGTTACGCCGGCCACTA 659
Query 660 TGTTCCCCAACTTGCTCAGATCATCATTCACCGTAACAAGAAAACCTT-AGTCAACCTAC 718
||||||||||||||| ||||||||| |||||||||||||| ||||||| | |||||||||
Sbjct 660 TGTTCCCCAACTTGCCCAGATCATCCTTCACCGTAACAAGCAAACCTTCA-TCAACCTAC 718
Query 719 GAGGAATTTTGATCGGTAATCCATCACTTC-TCACATC-GATCCAGGATCCATACGGCTA 776
||| |||||||||||||||||||||| || | || | ||||||||| | || | |||
Sbjct 719 AAGGCATTTTGATCGGTAATCCATCAC-TCGCCGCA-CTGATCCAGGAGCGATTCACCTA 776
Query 777 CGAATTTATGTTAAGTCATGGTTTGATGTCCCAACAACAAATGGACAATTATAATC-AAT 835
| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 777 CAAATTTATGTTAAGTCATGGTTTGATGTCCCAACAACAAATGGACAATTATAA-CAAAT 835
Query 836 TCTGCCTAAGAGATGACTTATATGATAATGACAAGTGCGCACTTTC-GGTA-AAAACAAT 893
||||| | || || |||||||||||||||||||||||| || || | | | |||| | |
Sbjct 836 TCTGCATGAGCGAGGACTTATATGATAATGACAAGTGCACA-TTGCTGACACAAAA-ATT 893
Query 894 CGAT-GATGCAAAAAAGCACTTGGACACTTACAACATATACGCTCCTGTGTGTCTAAACT 952
|| | || |||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 894 CG-TCTATACAAAAACGCACTTGGACACTTACAACATATACGCTCCTGTGTGCCTAAACT 952
Query 953 CCACGTTGAGCAGGATATCCAAGAAATGCACCACAGTTTTGGAGGTTGATCCGTGCAGTA 1012
|||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 953 CCACGTTGAGAAGCAAATCCAAGAAATGCACCACAGTAATGGAGGTTGATCCGTGCAGT- 1011
Query 1013 AG-GACTACTTGAAGGCTTATCTTAACAGAAAAAAGGTTCAAAAAGCGATACATGCCAAC 1071
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GGCGACTACATGAAGGCTTATCTTAACAGAAAAAAGGTTCAAAAAGCGATACATGCCAAC 1071
Query 1072 ACCACCAAATTACCGTATGAGTGGACCTCTTGCAATAACGAACTGACTGA-GAATTGGAG 1130
||||| ||||||||||| ||||||||||||||| || ||| | ||| ||| | | |||||
Sbjct 1072 ACCACAAAATTACCGTACGAGTGGACCTCTTGCCATGACGCATTGAGTGAGGTA-TGGAG 1130
Query 1131 CGA-AAATGATAGAGACACCCCGATGATACCTATCCTCCACGAGCTGATGGGCGAGGGTG 1189
| | ||| || ||| | | |||| ||||||||| |||||||| ||||| |||||||
Sbjct 1131 C-ACTGATGTTAAAGATGTCTCAATGACACCTATCCTTCACGAGCTTATGGGTGAGGGTG 1189
Query 1190 TCCGAGTCATGATCTACAATGGAGACGTGGACCTGGAGATTCCATTTGCATCTACATTAG 1249
| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1190 TTCGAGTCATGATCCACAATGGAGACGTGGACCTGGAGATTCCATTTCCATCTACAGTGG 1249
Query 1250 CCGTGGTGAAGGA-GATGAATCTAACGGTTGTAAAGGAATTTCGTCCCTGGTTTACGGGA 1308
||||| |||| || |||||||| |||||||||||||||| ||||| |||||||| |||
Sbjct 1250 CCGTGCTGAA-GACAATGAATCTGACGGTTGTAAAGGAATGGCGTCCGTGGTTTACCGGA 1308
Query 1309 GGACAGCTGGGAGGGTTCACAGAGGATTACAAAGGGAACTTAACCTTTGTAACTGTGAAA 1368
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GGACAGCTGGGAGGGTTCGCAGAGGATTACAAAGGGAACTTAACCTTTGTAACTGTGAAA 1368
Query 1369 GGAGCAGGTCATAGTGTTCCTACGGACCAACCTATACATGCTCTTAATATCTTTACCAGC 1428
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1369 GGAGCAGGTCATAGTGTTCCTACGGACCAACCTATACATGCTCTTAATATTTTTACCAGC 1428
Query 1429 TTTATCCGTAACACTCCACTCCCTCACACAGCCTGA 1464
||||||||||| ||||| |||||||| ||| |||||
Sbjct 1429 TTTATCCGTAATACTCCTCTCCCTCAAACACCCTGA 1464
> Ahg323748 jgi|Araly1|323748|fgenesh1_pm.C_scaffold_5001292
Length=1446
Score = 1496 bits (810), Expect = 0.0
Identities = 1273/1488 (86%), Gaps = 66/1488 (4%)
Strand=Plus/Plus
Query 1 ATGGTAAAACAACAAGATTGGTCCGTGACTACTTGTGTTTTGCTATTCTTGTTTTTGGCA 60
|||| | ||| ||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 1 ATGGGACAACGACAAGATTGGTCCGTGACTGCTTGTGTTTTCCTATTCTTGTCTTTGGCA 60
Query 61 TCACAAATCCATTGTAGGAGCGGAATACATGTTTCAAAACGTTTGGAGGGGTCAAAGCAA 120
||||||||||||||||||||| ||||| | |||| || | | | |||| |
Sbjct 61 TCACAAATCCATTGTAGGAGCCAAATAC-TTTTTC-CAA-G---CCA----T--AAGCGA 108
Query 121 GGAGATGGTAAGTCAGGTGATACGAG---CTTCAATGTGCTTCGTC------GCGTGCTT 171
|| | |||| |||||| || ||||| |||||||||| |||||| | |||| |
Sbjct 109 GGGGTTGGTTCGTCAGGCGACACGAGCCACTTCAATGTGATTCGTCGTGAAAGTGTGCCT 168
Query 172 TCGCCAAAGGAGAAAGATCTAATCAAGAAGCTCCCCGGACAACCTTCCGGCGTTAGTTTT 231
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 169 TCGCCAAAGGAGAAAGATCTAATCAAGCAGCTCCCCGGACAACCTTCCGACGTTACTTTC 228
Query 232 AGACAGTATGGCGGTTATGTGCCCGTAAACGAACCATCCAGTCGGTTTTTGTACTATTAT 291
| ||||||||||||||||||| |||||||||||||| || || |||||||||||||||||
Sbjct 229 AAACAGTATGGCGGTTATGTGGCCGTAAACGAACCAGCCGGTAGGTTTTTGTACTATTAT 288
Query 292 TTTGTGGAAGCCATCAAACCCAATACATCTACTCCTCTGGTCATCTGGTTCAACGGAGGA 351
|| ||||||||||||||||||| || |||||||||||| || ||||||||||||||||||
Sbjct 289 TTCGTGGAAGCCATCAAACCCAGTAAATCTACTCCTCTTGTGATCTGGTTCAACGGAGGA 348
Query 352 CCGGCCTGCTCATCTCTAGGTGGGGCATTTCTAGAGCTTGGTCCCTTCCGCGTACATAGC 411
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 349 CCGGCCTGCTCATCTCTAGGTGGGGCATTTAAAGAGCTTGGTCCATTCCGCGTACATAGC 408
Query 412 GGCGGCAGAAA-ACTTTTCCGCAATCCTTATTCATGGAACAACGAGGCGAACGTGTTGTT 470
| |||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GATGGCA-AAACGCTGTTCCGCAATCCTTATTCATGGAACAACGAGGCGAACGTGTTGTT 467
Query 471 CTTAGAATCGCCTGTAACGACAGGTTTCTCGTACTCGAGTAATCCAATTGATTTGGAGGA 530
||||||| |||| ||| |||||| ||||||||||||| || ||||| | || | | |||
Sbjct 468 CTTAGAAACGCCGGTAGGGACAGGATTCTCGTACTCGAATAGTCCAA-T-ATAT-G-GGA 523
Query 531 ATTGGGGGAGAAAGGGGACAAGGCAACAGCAGAGGATAACTACATTTTCTTGATGAATTG 590
| | ||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct 524 A-------A-CAAGGGGACAAGCCAACAGCAGAGGATAACTACATGTTCTTGGTGAATTG 575
Query 591 GCTAGAAAGGTTTCCCGAATATAAAGGAAGAGACATTTACATCGCCGGTCAGAGTTACGC 650
||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 576 GCTTGAAAGGTTTCCGGAATATAAAGGAAGAGAAATTTACATTACCGGTCAGAGTTACGC 635
Query 651 TGGCCACTATGTTCCCCAACTTGCTCAGATCATCATTCACCGTAACAAGAAAACCTT-AG 709
||||||||||||||||||||||| ||||| |||||||||||||||||| |||| || |
Sbjct 636 CGGCCACTATGTTCCCCAACTTGCCCAGATTATCATTCACCGTAACAAGCAAACTTTCA- 694
Query 710 TCAACCTACGAGGAATTTTGATCGGTAATCCATCACTTCTCACATCGATCCAGGATCCAT 769
||||||||||||| |||||||| ||||| ||||||||| || |||||| || ||
Sbjct 695 TCAACCTACGAGGCATTTTGATTGGTAACCCATCACTTAACAGGGAGATCCAAGAAGAAT 754
Query 770 ACGGCTACGAATTTATGTTAAGTCATGGTTTGATGTCCCAACAACAAATGGACAATTATA 829
|||| || |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 755 TCGGCAACAAATTTATGTTTAGTCATGGTTTGATATCCCAACAACAAATGGACAATTATA 814
Query 830 ATC-AATTCTGCCTAAGAGATGACTTATATGATAATGACAAGTGCGCACTTTCG-GT--A 885
| | ||||||| | | | |||||||||||| ||||||| ||| || | ||
Sbjct 815 A-CAAATTCTG--T-ACCTACGACTTATATGATTGGGACAAGT--GCAAATTGGCGTCCC 868
Query 886 AAAACAATCGATGATGCAAAAAAGCA--CTTGGACACTTACAACATATACGCTCCTGTGT 943
|||| || || ||| ||||||| || |||||||| |||||||||||||||||| ||||
Sbjct 869 AAAA-GATAGAAGAT-CAAAAAA-CACGCTTGGACATTTACAACATATACGCTCCAGTGT 925
Query 944 GTCTAAACTCCACGTTGAGCAG-GATATCCAAGAAATGCACCACAGTTTTGGAGGTTGAT 1002
| ||||||||||| |||||||| || | ||||||| ||||||||| | |||||||||||
Sbjct 926 GCCTAAACTCCACATTGAGCAGCGA-ACCCAAGAACTGCACCACAATAATGGAGGTTGAT 984
Query 1003 CCGTGCAGTAAGG--ACTACTTGAAGGCTTATCTTAACA-GAAAAAAGGTTCAAAAAGCG 1059
||||||||| || |||| ||||||||||||||||||| | ||| |||||||| ||||
Sbjct 985 CCGTGCAGT--GGCAACTATTTGAAGGCTTATCTTAACACG-AAAGAGGTTCAAGAAGCA 1041
Query 1060 ATACATGCCAACACCACCAAATTACCGTATGAGTGGACCTCTTGCAATAACG-AACT-GA 1117
||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |
Sbjct 1042 ATACATGCCAACACCACGAAATTACCGTATGAGTGGACCTCTTGCAATAA-GAAACTGGG 1100
Query 1118 CTGAGAATTGGAGCGAAAATGATAGAGACACCCCGA-TGATACCTATCCTCCACGAGCTG 1176
|| ||| |||| | ||||||||| | | | | | ||| ||||||||| || ||||||
Sbjct 1101 TTGGGAA-TGGAACAAAAATGATAAATATGTCTC-ATTGACACCTATCCTTCAAGAGCTG 1158
Query 1177 ATGGGCGAGGGTGTCCGAGTCATGATCTACAATGGAGACGTGGACCTGGAGATTCCATTT 1236
||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 1159 ATGGGTGAGGGTGTCCGAGTCATGCTGTACAATGGAGACGTGGACCTGGTGATTCCATTT 1218
Query 1237 GCATCTACATTAGCCGTGGTGAAGGAGATGAATCTAACGGTTGTAAAGGAATTTCGTCCC 1296
|||| | | |||||| ||||| ||||||||| |||||||||||||||| |||||
Sbjct 1219 ACATCGGTAGTGGCCGTGCTGAAGTCGATGAATCTGACGGTTGTAAAGGAATGGCGTCCG 1278
Query 1297 TGGTTTACGGGAGGACAGCTGGGAGGGTTCACAGAGGATTACAAAGGGAACTTAACCTTT 1356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TGGTTTACCGGAGGACAGCTGGGAGGGTTCACAGAGGATTACAAAGGGAACTTAACCTTT 1338
Query 1357 GTAACTGTGAAAGGAGCAGGTCATAGTGTTCCTACGGACCAACCTATACATGCTCTTAAT 1416
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 GTAACTGTGAAAGGATCAGGTCATAGTGTTCCTACGGACCAACCTATACATGCTCTTAAT 1398
Query 1417 ATCTTTACCAGCTTTATCCGTAACACTCCACTCCCTCACACAGCCTGA 1464
|| |||||||||||||||||||| ||||| |||||||| ||| |||||
Sbjct 1399 ATTTTTACCAGCTTTATCCGTAATACTCCTCTCCCTCAAACACCCTGA 1446
> Ahg485559 jgi|Araly1|485559|fgenesh2_kg.5__1551__AT2G05850.1
Length=1508
Score = 1330 bits (720), Expect = 0.0
Identities = 1289/1550 (83%), Gaps = 94/1550 (6%)
Strand=Plus/Plus
Query 1 ATGGTAAAACAACAAGATTGGTCCGTGACTACTTGTGTTTTGCTATTCTTGTTTTTGGCA 60
|||| ||||| ||| ||||||||| |||| ||||| |||| ||||| |||| | | |||
Sbjct 4 ATGGGAAAACGACATGATTGGTCCCTGACCGCTTGTATTTTCCTATTATTGTCTCTAGCA 63
Query 61 TCACAAATCCATTGTAGGAGCGGAATACATGTTTCAAAACGTTTGGAGGGGTCAAAGCAA 120
| ||||||||||||||| ||| ||||| | |||| || | | | | |||| |
Sbjct 64 TTACAAATCCATTGTAGTAGCCAAATACGT-TTTC-CAA-G--T-CA----T--AAGCGA 111
Query 121 GGAGATGGTA-AGTCAGGTGATACGAG---CTTCAA-TGTGCTTCGTCGC------GTGC 169
|||| ||| | ||||||||| || || |||||| | | |||||||| ||||
Sbjct 112 GGAGTTGG-ATTGTCAGGTGACACAAGCCACTTCAATTCT-ATTCGTCGCGAAAATGTGC 169
Query 170 TTTCGCCAAAGGAGAAAGATCTAATCAAGAAGCTCCCCGGACAACCTTCCGGCGTTAGTT 229
|||||| ||||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 170 TTTCGCTTAAGGAGAAAGATCTAATCAAGCAGCTCCCCGGACAACCTT-C--CGTTAGTT 226
Query 230 TTAGACAGTATGGCGGTTATGTGCCCGTAAACGAACCATCCAGTCGGTTTTTGTACTATT 289
| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 227 TCAGACAATATGGCGGTTATGTGGCCGTAAACGAACCCGCCAGTCGGTTTTTGTACTATT 286
Query 290 ATTTTGTGGAAGCCATCAAACCCAATACATCTACTCCTCTGGT-CATCTGGTTCAACGGA 348
|||| |||||||||||||||||||||| |||||||||||| || | | ||||||||||||
Sbjct 287 ATTTCGTGGAAGCCATCAAACCCAATAAATCTACTCCTCTTGTGC-TTTGGTTCAACGGA 345
Query 349 GGACCGGCCTGCTCATCTCTAGG---TGGGGCATTTCTAGAGCTTGGTCCCTTCCGCGTA 405
||||| |||||||||||| |||| |||||||||| |||||||||||| |||||||||
Sbjct 346 GGACCTGCCTGCTCATCTGTAGGACTTGGGGCATTTGAAGAGCTTGGTCCATTCCGCGTA 405
Query 406 CATAGCGGCGGCAGAAA-ACTTTTCCGCAATCCTTATTCATGGAACAACGAGGCGAACGT 464
||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| |
Sbjct 406 CATAGCGACGGCA-AAACGCTTTTCCGCAATCCGTATTCATGGAACAACGAGGCGAACAT 464
Query 465 GTTGTTCTTAGAATCGCCTGTAAC-GACAGGTTTCTCGTACTCGAGTAATCCAATTGATT 523
||||||||| ||| ||| ||||| | ||| |||||||||||||||| |||| |||||
Sbjct 465 GTTGTTCTTCGAAGGGCCGGTAACTG-TAGGATTCTCGTACTCGAGTACTCCATTTGATG 523
Query 524 TGGAGGAATTGGGGGAGA-AAGGGGACAAGGC-AACAGCAGAGGATAACTACATTTTC-T 580
|||| |||| ||||| | |||||||||| || || ||||||||||||||||| ||| |
Sbjct 524 CGGAGAAATTTGGGGA-ACAAGGGGACAA-GCTGACTGCAGAGGATAACTACATGTTCTT 581
Query 581 TGATGAATTGGCTAGAAAGGTTTCCCGAATATAAAGGAAGAGACATTTACATCGCCGGTC 640
|| |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 582 TG-TGAATTGGCTTGAAAGGTTTCCGGAATATAAAGGAAGAGAAATTTACATCGCCGGTG 640
Query 641 AGAGTTACGCTGGCCACTATGTTCCCCAACTTGCTCAGATCATCATTCACCGTAACAAGA 700
|||||||||| || |||||| ||||| ||||||| ||||||||| ||||||||||||||
Sbjct 641 AGAGTTACGCCGGTCACTATATTCCCGAACTTGCCCAGATCATCCTTCACCGTAACAAGC 700
Query 701 AAACCTT-AGTCAACCTACGAGGAATTTTGATCGGTAATCCA--TC---AC-TTCTCACA 753
||||||| | |||| |||| ||| |||||||| ||||||||| || || | || ||
Sbjct 701 AAACCTTCA-TCAATCTACAAGGCATTTTGATTGGTAATCCAGGTCTGGACGTACTTAC- 758
Query 754 TCGATCCAGGATCCATACGGCTACGAATTTATGTTAAGTCATGGTTTGATGT-CCCAACA 812
||| || ||| | | | |||||||||||||||| ||||||||| | | ||||| |
Sbjct 759 -CGA-GCATGAT--A-ATGAAAACGAATTTATGTTAAGCCATGGTTTGGT-TACCCAAAA 812
Query 813 ACAAATGGACA-ATTATAATCAATTCTGCCTAAGAGA-TGACTT--ATAT-G-ATAATG- 865
| | || || | | | ||| || ||||||| | || | | || |||| | | ||||
Sbjct 813 AGATATTGA-AGAGTCCAATAAAGTCTGCCTTGGCGACTCA-TTCAATATGGAAGAATGC 870
Query 866 ACAAGTGCGCACT-TTCGGT-AAAAACAATCGATGATGCA-A-A--AAAGCACTTGGACA 919
|||| | | | | ||| || | | ||| || || | | |||| ||||||||
Sbjct 871 ACAA---AG-A-TAAT-GGTGGCTAA-ATTTGATTATACAGACAGCAAAG-TCTTGGACA 922
Query 920 CTTACAACATATACGCTCCTGTGTGTCTAAACTCCACGTTGAGCAG-GATATCCAAGAAA 978
||||||||||||||||| |||||| | |||||||||||||||||| || | ||||||||
Sbjct 923 TTTACAACATATACGCTCTTGTGTGCCAAAACTCCACGTTGAGCAGCGA-ACCCAAGAAA 981
Query 979 TGCACCACAGTTTTGGAGGTTGATCCGTGCAGTAAG-GACTACTTGAAGGCTTATCTTAA 1037
||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 982 TGCACCACAATAATGGAGGTTGATCCGTGCAG-AAGCAACTACGTGAAGGCTTATCTTAA 1040
Query 1038 CAGAAAAAAGGTTCAAAAAGCGATACATGCCAACACCACCAAATTACCGTATGAGTGGAC 1097
|||| |||| |||||| ||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1041 CAGAGAAAATGTTCAAGAAGCGATGCATGCCAACACCACAAAATTACCGTACGAGTGGAA 1100
Query 1098 CTCTTGCAAT-AACGAAC-TGACTGAGAAT-TGGAGCGAAAATGATAGAGACACCCCGAT 1154
||||||||| || | || ||| | | | |||| ||||| ||||| ||| || | ||
Sbjct 1101 GTCTTGCAATGAA-G-ACTTGAATTA-TTTATGGAACGAAACTGATAAAGATGCCTCAAT 1157
Query 1155 GATACCTATCCTCCACGAGCTGATGGGCGAGGGTGTCCGAGTCATGATCTACAATGGAGA 1214
||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1158 GATTCCTATCCTTCACGAGCTGATGGGTAAGGGTGTCCGAGTCATGATCTACAGTGGAGA 1217
Query 1215 CGTGGACCTGGAGATTCCATTTGCATCTACATTAGCCGTGGTGAAGGAGATGAATCTAAC 1274
||||||||||| | |||| ||| || ||||| | |||||| |||||||||||||||||||
Sbjct 1218 CGTGGACCTGGCGGTTCCGTTTACAGCTACAGTGGCCGTGCTGAAGGAGATGAATCTAAC 1277
Query 1275 GGTTGTAAAGGAATTTCGTCCCTGGTTTACGGGAGGACAGCTGGGAGGGTTCACAGAGGA 1334
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1278 GGTTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACAGCTGGGAGGGTTCACAGAGGA 1337
Query 1335 TTACAAAGGGAACTTAACCTTTGTAACTGTGAAAGGAGCAGGTCATAGT-GTTCCTACGG 1393
||||||||||||||| || | || ||||||||||||||||||||||| | ||||||||||
Sbjct 1338 TTACAAAGGGAACTTGACGTATGCAACTGTGAAAGGAGCAGGTCATA-TGGTTCCTACGG 1396
Query 1394 ACCAACCTATACATGCTCTTAATATCTTTACCAGCTTTATCCGTAACACTCCACTCCCTC 1453
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1397 ACCAACCTATACATGCTCTTAATATCTTTACCAGCTTTATCCGTAACACTCCTCTCCCTC 1456
Query 1454 ACACAGCCTGATTTCTAACTTGTACCACCTCGATTGACTGAACAATATAC 1503
| ||| |||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 1457 AAACACCCTGATTTGTAACTTGTACCACCTCTATTGACTGAACAAAATAC 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60296857835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5